| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86750864
Identifier: 86750864
GI number: 86750864
Start: 4290929
End: 4292086
Strand: Direct
Name: 86750864
Synonym: RPB_3755
Alternate gene names: NA
Gene position: 4290929-4292086 (Clockwise)
Preceding gene: 86750862
Following gene: 86750867
Centisome position: 80.48
GC content: 72.37
Gene sequence:
>1158_bases GTGGCCGACATCGCGACTTCAACGCCGATCACACGCGCCCCGCGAGGCGGGGCGGCGACACGCGCGGTTTTGCCGGCGAT GGCTGCGATCGACGCCGGCGGCTGGCGCGATCTCGCCGACCGGGCGCTCGAACCGAATGCCTATTACCTGCCGGAATGGG CCATGGCCGCGAACGGCGACGCCCGTGCCCGCGCCGTGACCCACGCGCTGACGGCCGATGATGCGAGCGGGGCGCTGATC GGCCTGTTGCCGGTGCTGTCGGCCTGGCAAGCGTTTCGGTTGCCGCTGCCGGTGCTGGTCTCCGCCGATCCGTTCCGCTC GCTCGACACGCCCGTGCTCGACCGCGGCGCTGCCGACCGCGCCGCCGCCGCAATGCTGGCTCAGGCCCGCGCGACCGGAG CCCACGCCTTGCTGCTGCGCGACGTCGCGCGCGACGGCGAAGCCATGCAGACATTGTCGCGCGCCGCGGCTGCCGACGGC CTTTCGCCGGTGCTGCTGCGCGGTTGGTCGCGCGCCTGCCTCGACGCCACGCGCGACGGCGACGAATTGCTGCGCGACGC GCTCGGCGGCAAGCGTCTCAAGGAATATCGCCGGCTGACGCGCCGGCTCGGCGACCACGGCGAGGCGCGCTTCAGCATGG CGCGAACGCCGGATGCGGTGGCCGAGGCCTATGATCTGTTTCTCGCGCTGGAAGCCAGCGGCTGGAAGGGCCGCCGCGGC ACCGCGCTGATGCACCAGCCGGAGCTGGCCGGGCGGCTGCGGCAAGCCGCGATCGCGCTGGCCGCGCGCGGCGCCTGCGA GATCGCGCTTTTGCACGCGGGCGCAGAGCCGATCGCCGCCGGCATCGTGCTGCGGCAAGGCGACCGCGCCTTCTTCTTCA AGCTCGGCATCGCCGAAGGCTTCGCCCGGCATTCGCCGGGCGTGCTGCTGACACTGGAACTGACGCGGCATCTTTGCGCC GATCCGGCGATCGCGATGGTCGATTCCACCGCTGCGCCCGATCATCCGATGATCGACCCGATCTGGCGCGGGCGGCTGGC GATGGGCGACGTGCTGATCCCGCTGCGATCGCGCGATCCGCTGTTCGGACCGATCACGCTCGCCCTGCGCGCCCGCGAAG CGCTGCGCCAGACGGCGAAGCGCATGCTCAAGCGATAG
Upstream 100 bases:
>100_bases GCGGTGAACTCACTCATTTCCCATCTGTCTCCTTTATTTTTCCATCGACGCCGGACGTCGCGATCGACCGCGACGGCTGC GCTATGGGCAGGATGCTGAC
Downstream 100 bases:
>100_bases ATTGCCAGTCGACGCGTTTTCTTCACGCGAACCGGGATCCACTTCGCTCGAAAACGCTATGGTTACTCCGCCGCCTCGGC GTTGATCTCCGCCGAGATGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MADIATSTPITRAPRGGAATRAVLPAMAAIDAGGWRDLADRALEPNAYYLPEWAMAANGDARARAVTHALTADDASGALI GLLPVLSAWQAFRLPLPVLVSADPFRSLDTPVLDRGAADRAAAAMLAQARATGAHALLLRDVARDGEAMQTLSRAAAADG LSPVLLRGWSRACLDATRDGDELLRDALGGKRLKEYRRLTRRLGDHGEARFSMARTPDAVAEAYDLFLALEASGWKGRRG TALMHQPELAGRLRQAAIALAARGACEIALLHAGAEPIAAGIVLRQGDRAFFFKLGIAEGFARHSPGVLLTLELTRHLCA DPAIAMVDSTAAPDHPMIDPIWRGRLAMGDVLIPLRSRDPLFGPITLALRAREALRQTAKRMLKR
Sequences:
>Translated_385_residues MADIATSTPITRAPRGGAATRAVLPAMAAIDAGGWRDLADRALEPNAYYLPEWAMAANGDARARAVTHALTADDASGALI GLLPVLSAWQAFRLPLPVLVSADPFRSLDTPVLDRGAADRAAAAMLAQARATGAHALLLRDVARDGEAMQTLSRAAAADG LSPVLLRGWSRACLDATRDGDELLRDALGGKRLKEYRRLTRRLGDHGEARFSMARTPDAVAEAYDLFLALEASGWKGRRG TALMHQPELAGRLRQAAIALAARGACEIALLHAGAEPIAAGIVLRQGDRAFFFKLGIAEGFARHSPGVLLTLELTRHLCA DPAIAMVDSTAAPDHPMIDPIWRGRLAMGDVLIPLRSRDPLFGPITLALRAREALRQTAKRMLKR >Mature_384_residues ADIATSTPITRAPRGGAATRAVLPAMAAIDAGGWRDLADRALEPNAYYLPEWAMAANGDARARAVTHALTADDASGALIG LLPVLSAWQAFRLPLPVLVSADPFRSLDTPVLDRGAADRAAAAMLAQARATGAHALLLRDVARDGEAMQTLSRAAAADGL SPVLLRGWSRACLDATRDGDELLRDALGGKRLKEYRRLTRRLGDHGEARFSMARTPDAVAEAYDLFLALEASGWKGRRGT ALMHQPELAGRLRQAAIALAARGACEIALLHAGAEPIAAGIVLRQGDRAFFFKLGIAEGFARHSPGVLLTLELTRHLCAD PAIAMVDSTAAPDHPMIDPIWRGRLAMGDVLIPLRSRDPLFGPITLALRAREALRQTAKRMLKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41102; Mature: 40971
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADIATSTPITRAPRGGAATRAVLPAMAAIDAGGWRDLADRALEPNAYYLPEWAMAANGD CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEECCCHHHHCCCC ARARAVTHALTADDASGALIGLLPVLSAWQAFRLPLPVLVSADPFRSLDTPVLDRGAADR HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHCCCCHHH AAAAMLAQARATGAHALLLRDVARDGEAMQTLSRAAAADGLSPVLLRGWSRACLDATRDG HHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH DELLRDALGGKRLKEYRRLTRRLGDHGEARFSMARTPDAVAEAYDLFLALEASGWKGRRG HHHHHHHHCHHHHHHHHHHHHHHCCCCCHHEECCCCCHHHHHHHHHHEEEECCCCCCCCC TALMHQPELAGRLRQAAIALAARGACEIALLHAGAEPIAAGIVLRQGDRAFFFKLGIAEG CEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCEEEECCCCEEEEEEEHHHH FARHSPGVLLTLELTRHLCADPAIAMVDSTAAPDHPMIDPIWRGRLAMGDVLIPLRSRDP HHHCCCCEEEEHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHCCCHHHCCEEEEECCCCC LFGPITLALRAREALRQTAKRMLKR CCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ADIATSTPITRAPRGGAATRAVLPAMAAIDAGGWRDLADRALEPNAYYLPEWAMAANGD CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEECCCHHHHCCCC ARARAVTHALTADDASGALIGLLPVLSAWQAFRLPLPVLVSADPFRSLDTPVLDRGAADR HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHCCCCHHH AAAAMLAQARATGAHALLLRDVARDGEAMQTLSRAAAADGLSPVLLRGWSRACLDATRDG HHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH DELLRDALGGKRLKEYRRLTRRLGDHGEARFSMARTPDAVAEAYDLFLALEASGWKGRRG HHHHHHHHCHHHHHHHHHHHHHHCCCCCHHEECCCCCHHHHHHHHHHEEEECCCCCCCCC TALMHQPELAGRLRQAAIALAARGACEIALLHAGAEPIAAGIVLRQGDRAFFFKLGIAEG CEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCEEEECCCCEEEEEEEHHHH FARHSPGVLLTLELTRHLCADPAIAMVDSTAAPDHPMIDPIWRGRLAMGDVLIPLRSRDP HHHCCCCEEEEHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHCCCHHHCCEEEEECCCCC LFGPITLALRAREALRQTAKRMLKR CCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA