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The map label for this gene is ymdB [C]

Identifier: 86750813

GI number: 86750813

Start: 4241526

End: 4241909

Strand: Reverse

Name: ymdB [C]

Synonym: RPB_3703

Alternate gene names: 86750813

Gene position: 4241909-4241526 (Counterclockwise)

Preceding gene: 86750814

Following gene: 86750812

Centisome position: 79.56

GC content: 70.31

Gene sequence:

>384_bases
TTGCTGGCCGCGTGTCGCAAGCTCGGCGGCTGTGCCACCGGCGATGCCAAGATCACCTTGGGCTACGATCTGCCGGCGCG
CCATGTGATCCATGCGGTCGGCCCGGTCTGGCACGGCGGCCGGTCGGGCGAGGACGAAGCGCTCGCCTCCTGCTATCGCC
GCGCGCTGCAACTCTGCCGGCAGCACGGCCTCGCTTCGATCGCGTTTTCGGCGATCTCCACCGGCGTCTACGGCTTTCCC
CCCGAACGTGCCGCGCCGATCGCGGTCGCCGCCTGCATCGACGCGCTACGCACCGCGGCGCCGGTCGATCGCGTGGTGTT
CTGCTGTTTCTCCGAACCGAGCGCCGCTTTGCACCGCGCCGCGCTGGCGGCGGCTCTTGATTAG

Upstream 100 bases:

>100_bases
CACGACGCTCGCGGTCGACGCGATCGTCAACGCCGCCAACGGCTCGCTGCTGGGCGGCGGCGGCGTCGACGGCGCGATCC
ACCGCGCCGCGGGGCCGCAA

Downstream 100 bases:

>100_bases
CGGCACGCGAGCGTTACCATCCGTCCCGTCACAATCGGGAGGAAGACTGATGATGTTGCGTCATGCCGTGCGGACGCTGT
TGGCCGGAGCGCTGGTCGCG

Product: Appr-1-p processing

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MLAACRKLGGCATGDAKITLGYDLPARHVIHAVGPVWHGGRSGEDEALASCYRRALQLCRQHGLASIAFSAISTGVYGFP
PERAAPIAVAACIDALRTAAPVDRVVFCCFSEPSAALHRAALAAALD

Sequences:

>Translated_127_residues
MLAACRKLGGCATGDAKITLGYDLPARHVIHAVGPVWHGGRSGEDEALASCYRRALQLCRQHGLASIAFSAISTGVYGFP
PERAAPIAVAACIDALRTAAPVDRVVFCCFSEPSAALHRAALAAALD
>Mature_127_residues
MLAACRKLGGCATGDAKITLGYDLPARHVIHAVGPVWHGGRSGEDEALASCYRRALQLCRQHGLASIAFSAISTGVYGFP
PERAAPIAVAACIDALRTAAPVDRVVFCCFSEPSAALHRAALAAALD

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=124, Percent_Identity=46.7741935483871, Blast_Score=118, Evalue=1e-27,
Organism=Homo sapiens, GI13569840, Length=120, Percent_Identity=46.6666666666667, Blast_Score=100, Evalue=6e-22,
Organism=Homo sapiens, GI207450721, Length=104, Percent_Identity=38.4615384615385, Blast_Score=79, Evalue=8e-16,
Organism=Homo sapiens, GI8923143, Length=104, Percent_Identity=38.4615384615385, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1787283, Length=131, Percent_Identity=43.5114503816794, Blast_Score=103, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17538214, Length=112, Percent_Identity=37.5, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 13173; Mature: 13173

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
5.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAACRKLGGCATGDAKITLGYDLPARHVIHAVGPVWHGGRSGEDEALASCYRRALQLCR
CCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
QHGLASIAFSAISTGVYGFPPERAAPIAVAACIDALRTAAPVDRVVFCCFSEPSAALHRA
HCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHEEEECCCCHHHHHHH
ALAAALD
HHHHHCC
>Mature Secondary Structure
MLAACRKLGGCATGDAKITLGYDLPARHVIHAVGPVWHGGRSGEDEALASCYRRALQLCR
CCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
QHGLASIAFSAISTGVYGFPPERAAPIAVAACIDALRTAAPVDRVVFCCFSEPSAALHRA
HCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHEEEECCCCHHHHHHH
ALAAALD
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]