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The map label for this gene is rhaS [C]

Identifier: 86750770

GI number: 86750770

Start: 4201767

End: 4202765

Strand: Reverse

Name: rhaS [C]

Synonym: RPB_3660

Alternate gene names: 86750770

Gene position: 4202765-4201767 (Counterclockwise)

Preceding gene: 86750774

Following gene: 86750768

Centisome position: 78.83

GC content: 64.46

Gene sequence:

>999_bases
GTGAGAGCGAGGTCTGCTTTGCAGAGAGTTGTGTACAGCGCCCATGATTTGTCGCCCGGGCTCGACGACCAGGCGCGGTT
CTCGCGGTGGCGCGATATCTACACGGCCAGTTTCCTGCAGAGCGGCAACGTGGTCCGATTATCCGACAGGCCGTTCGCTG
CGACCTGGGAGCACGCCCAGATCGGCGATAGTCTGGTGGCGCGTTTCGAAGGCACGTTGCAGCGCGTATCACGCGATGCC
CAGCAGGTTGCGGCGCATCCGGTGGACAGATTCTGCATCAGCTACAATCGGGCGTCGTCGCGGCAGGCAATGGTCCAGCG
CGGCAGGGAACTGACGCTGGAGCCGGGGACGCCGGCCTTTTTCAATCTGTCGGAGATGCTCGACTGCCGCTCCGAGCACG
GCGAGGCCCGGATCGGATTCACCCTGCCGCGCAAGACATTGCTGGATAGCATTCCGCATGCGGAAGATCTGGTGTTGCGA
CCGCTCGACCCGGGCGACGACGCGCTGCTGCACCTGCGCTGGTATCTCGACTTCCTGCTCGAACGAGACGGTGCCGCGCT
CGATCCGGCGATGGTCGCGCATGTGCAATCGGTCTTAATCGATCTGCTCGGTCTCGCGCTCGGCGTCGGTCGCGATCTTG
CAGAGGCCTCGAAACTGCGCGGGCTGCGCGCTGTGCGTTTTATGACCATCGTCGCGGAGATCGGGGCCGGCTTCGCCGAT
CCAGGATTTTCGGCGGCGCGGCTTGCCGCGAAGCTCAACCTGTCGTCGCGTTATATCCAGGACATCCTGCACGAAAGCGG
GGTGACCCTGACCGAGCGGGTGCTCGAGCTGCGGCTGCAGAAGGCCCGCAGATTGCTGGCATCCGGCCTGTCGCCCGCCT
TGAAAGTCACCGATATCGCGCTGAGTTGCGGCTTCAGCGACGTCTCCCACTTCAACCACAGCTTCCGCCGCCGGTTCGGC
GCGTCGCCGACCCAATTCCGGCCGCCGCGCATCAACTAG

Upstream 100 bases:

>100_bases
CAGGTAGTTGTTGCATTTCCGCATCGGGCGCCGACCTAACTATCAGTTTGCACTGGCGATGCCGGATCGGGCGCGTTACG
CTGATCGGGTGCTCACCGTT

Downstream 100 bases:

>100_bases
CTATCCGACCAGCCTGATCAATTCCATCGCCGCCGCAGGCGCGCGGACCTTGCCTTCATGAATGACGTAGGCGAACACGT
CGCGCTTCTGTTTCTTCGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator AraC Family; AraC/XylS Family Transcription Factor; AraC Family Regulatory Helix-Turn-Helix Protein; AraC Family Regulatory Protein; AraC/XylS Family Transcriptional Regulator; Transcription Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein; Regulatory Protein; Nitrilase Regulator Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MRARSALQRVVYSAHDLSPGLDDQARFSRWRDIYTASFLQSGNVVRLSDRPFAATWEHAQIGDSLVARFEGTLQRVSRDA
QQVAAHPVDRFCISYNRASSRQAMVQRGRELTLEPGTPAFFNLSEMLDCRSEHGEARIGFTLPRKTLLDSIPHAEDLVLR
PLDPGDDALLHLRWYLDFLLERDGAALDPAMVAHVQSVLIDLLGLALGVGRDLAEASKLRGLRAVRFMTIVAEIGAGFAD
PGFSAARLAAKLNLSSRYIQDILHESGVTLTERVLELRLQKARRLLASGLSPALKVTDIALSCGFSDVSHFNHSFRRRFG
ASPTQFRPPRIN

Sequences:

>Translated_332_residues
MRARSALQRVVYSAHDLSPGLDDQARFSRWRDIYTASFLQSGNVVRLSDRPFAATWEHAQIGDSLVARFEGTLQRVSRDA
QQVAAHPVDRFCISYNRASSRQAMVQRGRELTLEPGTPAFFNLSEMLDCRSEHGEARIGFTLPRKTLLDSIPHAEDLVLR
PLDPGDDALLHLRWYLDFLLERDGAALDPAMVAHVQSVLIDLLGLALGVGRDLAEASKLRGLRAVRFMTIVAEIGAGFAD
PGFSAARLAAKLNLSSRYIQDILHESGVTLTERVLELRLQKARRLLASGLSPALKVTDIALSCGFSDVSHFNHSFRRRFG
ASPTQFRPPRIN
>Mature_332_residues
MRARSALQRVVYSAHDLSPGLDDQARFSRWRDIYTASFLQSGNVVRLSDRPFAATWEHAQIGDSLVARFEGTLQRVSRDA
QQVAAHPVDRFCISYNRASSRQAMVQRGRELTLEPGTPAFFNLSEMLDCRSEHGEARIGFTLPRKTLLDSIPHAEDLVLR
PLDPGDDALLHLRWYLDFLLERDGAALDPAMVAHVQSVLIDLLGLALGVGRDLAEASKLRGLRAVRFMTIVAEIGAGFAD
PGFSAARLAAKLNLSSRYIQDILHESGVTLTERVLELRLQKARRLLASGLSPALKVTDIALSCGFSDVSHFNHSFRRRFG
ASPTQFRPPRIN

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36897; Mature: 36897

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRARSALQRVVYSAHDLSPGLDDQARFSRWRDIYTASFLQSGNVVRLSDRPFAATWEHAQ
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHH
IGDSLVARFEGTLQRVSRDAQQVAAHPVDRFCISYNRASSRQAMVQRGRELTLEPGTPAF
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCHH
FNLSEMLDCRSEHGEARIGFTLPRKTLLDSIPHAEDLVLRPLDPGDDALLHLRWYLDFLL
CCHHHHHHHHHHCCCEEEEEECCHHHHHHCCCCCHHEEECCCCCCCHHHHHHHHHHHHHH
ERDGAALDPAMVAHVQSVLIDLLGLALGVGRDLAEASKLRGLRAVRFMTIVAEIGAGFAD
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PGFSAARLAAKLNLSSRYIQDILHESGVTLTERVLELRLQKARRLLASGLSPALKVTDIA
CCHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LSCGFSDVSHFNHSFRRRFGASPTQFRPPRIN
HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRARSALQRVVYSAHDLSPGLDDQARFSRWRDIYTASFLQSGNVVRLSDRPFAATWEHAQ
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHH
IGDSLVARFEGTLQRVSRDAQQVAAHPVDRFCISYNRASSRQAMVQRGRELTLEPGTPAF
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCHH
FNLSEMLDCRSEHGEARIGFTLPRKTLLDSIPHAEDLVLRPLDPGDDALLHLRWYLDFLL
CCHHHHHHHHHHCCCEEEEEECCHHHHHHCCCCCHHEEECCCCCCCHHHHHHHHHHHHHH
ERDGAALDPAMVAHVQSVLIDLLGLALGVGRDLAEASKLRGLRAVRFMTIVAEIGAGFAD
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PGFSAARLAAKLNLSSRYIQDILHESGVTLTERVLELRLQKARRLLASGLSPALKVTDIA
CCHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LSCGFSDVSHFNHSFRRRFGASPTQFRPPRIN
HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA