| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is livF [H]
Identifier: 86750683
GI number: 86750683
Start: 4097012
End: 4097731
Strand: Direct
Name: livF [H]
Synonym: RPB_3573
Alternate gene names: 86750683
Gene position: 4097012-4097731 (Clockwise)
Preceding gene: 86750682
Following gene: 86750693
Centisome position: 76.84
GC content: 66.94
Gene sequence:
>720_bases ATGAGCGCGTTGCTGCAGGTGTCCGACGTCTCCGTGTCTTATGGCAAAGTCGAGGCGGTGCGGTCGGTGACGCTCGAAGT CCGCGCGCGCGAGATCGTCACCGTGATCGGCGCCAACGGCGCCGGCAAGACCACGCTGCTCAACGCCACCATGGGGATTT TTCCGCTGAAGGGTGGCGTCACCTTCGACGGTGTCGACATCGCCAGCCTCGACATCGAGGACCGCGTCGCCGCCGGCCTG TCGCTGGTGCCGGAGCATCGCGAGCTGTTCGCCACCATGACGGTCGAGGACAATCTCGAACTCGGCGCCTTTCGCATCGC CAAGGCGACCGCGGCCCGATCTCAGGAACGCGTCTACGGCCTGTTTCCGCGGTTGAAGGAGCGACGCAAGCAGCTCGCCG GCACGCTGTCGGGCGGCGAGCAGCAGATGCTGGCGATGGGCCGCGCGCTGATGGGGGCGCCGAAATTGCTGATGCTCGAC GAGCCGAGCCTCGGCCTCGCCCCGATCATCGTCGCCGACATCTTCCGCATCATCGGCGAGTTGCGCGAAGCCGGCGTCTC GGTGCTGCTGGTCGAGCAGAACGCCAAGGCGGCGCTGCAGATCGCCGACCGCGCCTATGTGATGGAGCTCGGCGAATTCG TGCTCGACGGCCCGGCGTCGGACGTCGCGCAGAACGAGCAGGTGGTGGCGAGCTATCTCGGATTTTCGCACCCGGCCTGA
Upstream 100 bases:
>100_bases GCATCGTCGTGCTGGACTTCGGCACGCGGATCGCCGAGGGCACGCCCGACGCGATCAAGACCAATCCCGAAGTCATCAAG GCCTATCTCGGAGCCCTGGC
Downstream 100 bases:
>100_bases GACCGCAACGCGGCATTCTCGAGTGCGGATTCGTCATCCTGAGGTGCGCGCTCTTGCGCGCCTCGAAGGATGCGGCCAAG GCGCTTGCGGCTCATCCTTC
Product: ABC transporter related
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MSALLQVSDVSVSYGKVEAVRSVTLEVRAREIVTVIGANGAGKTTLLNATMGIFPLKGGVTFDGVDIASLDIEDRVAAGL SLVPEHRELFATMTVEDNLELGAFRIAKATAARSQERVYGLFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLD EPSLGLAPIIVADIFRIIGELREAGVSVLLVEQNAKAALQIADRAYVMELGEFVLDGPASDVAQNEQVVASYLGFSHPA
Sequences:
>Translated_239_residues MSALLQVSDVSVSYGKVEAVRSVTLEVRAREIVTVIGANGAGKTTLLNATMGIFPLKGGVTFDGVDIASLDIEDRVAAGL SLVPEHRELFATMTVEDNLELGAFRIAKATAARSQERVYGLFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLD EPSLGLAPIIVADIFRIIGELREAGVSVLLVEQNAKAALQIADRAYVMELGEFVLDGPASDVAQNEQVVASYLGFSHPA >Mature_238_residues SALLQVSDVSVSYGKVEAVRSVTLEVRAREIVTVIGANGAGKTTLLNATMGIFPLKGGVTFDGVDIASLDIEDRVAAGLS LVPEHRELFATMTVEDNLELGAFRIAKATAARSQERVYGLFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLDE PSLGLAPIIVADIFRIIGELREAGVSVLLVEQNAKAALQIADRAYVMELGEFVLDGPASDVAQNEQVVASYLGFSHPA
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27436953, Length=208, Percent_Identity=28.8461538461538, Blast_Score=88, Evalue=5e-18, Organism=Homo sapiens, GI27477115, Length=208, Percent_Identity=31.25, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI153792144, Length=210, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI45446740, Length=202, Percent_Identity=28.7128712871287, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI47078218, Length=202, Percent_Identity=28.7128712871287, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI27881501, Length=206, Percent_Identity=30.0970873786408, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI30795238, Length=206, Percent_Identity=30.0970873786408, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI27262624, Length=213, Percent_Identity=26.2910798122066, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI27262626, Length=213, Percent_Identity=26.2910798122066, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI116734710, Length=202, Percent_Identity=29.2079207920792, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI105990541, Length=204, Percent_Identity=26.9607843137255, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI21536376, Length=222, Percent_Identity=27.4774774774775, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI31657092, Length=208, Percent_Identity=26.4423076923077, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI150417984, Length=207, Percent_Identity=28.9855072463768, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI9961252, Length=234, Percent_Identity=25.6410256410256, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI9961250, Length=234, Percent_Identity=25.6410256410256, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4505771, Length=234, Percent_Identity=25.6410256410256, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI148612844, Length=236, Percent_Identity=26.6949152542373, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI4557481, Length=149, Percent_Identity=32.8859060402685, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI255708477, Length=236, Percent_Identity=26.6949152542373, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI42741659, Length=172, Percent_Identity=28.4883720930233, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI11967969, Length=218, Percent_Identity=24.3119266055046, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87082268, Length=232, Percent_Identity=50.4310344827586, Blast_Score=220, Evalue=8e-59, Organism=Escherichia coli, GI1789593, Length=236, Percent_Identity=33.8983050847458, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI1789864, Length=254, Percent_Identity=31.8897637795276, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1790162, Length=224, Percent_Identity=30.8035714285714, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789672, Length=218, Percent_Identity=27.0642201834862, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786872, Length=219, Percent_Identity=28.7671232876712, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1788472, Length=244, Percent_Identity=27.4590163934426, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87081791, Length=229, Percent_Identity=30.5676855895196, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1787029, Length=226, Percent_Identity=25.6637168141593, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790525, Length=230, Percent_Identity=30.8695652173913, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1788761, Length=214, Percent_Identity=29.4392523364486, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1790190, Length=207, Percent_Identity=31.8840579710145, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787089, Length=224, Percent_Identity=30.8035714285714, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1789991, Length=235, Percent_Identity=27.6595744680851, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1787105, Length=237, Percent_Identity=30.379746835443, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1787792, Length=230, Percent_Identity=28.2608695652174, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI48994943, Length=229, Percent_Identity=30.5676855895196, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1786253, Length=243, Percent_Identity=27.9835390946502, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786398, Length=245, Percent_Identity=26.9387755102041, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1787370, Length=240, Percent_Identity=28.3333333333333, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1790739, Length=239, Percent_Identity=27.6150627615063, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI87081782, Length=209, Percent_Identity=32.0574162679426, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI48995001, Length=227, Percent_Identity=28.6343612334802, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=30.9859154929577, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI87081709, Length=238, Percent_Identity=26.0504201680672, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788210, Length=219, Percent_Identity=26.4840182648402, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=27.8969957081545, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786319, Length=221, Percent_Identity=28.9592760180996, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787712, Length=217, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI48994883, Length=239, Percent_Identity=28.8702928870293, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788897, Length=202, Percent_Identity=27.2277227722772, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789586, Length=228, Percent_Identity=29.8245614035088, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI87082267, Length=216, Percent_Identity=28.7037037037037, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1788644, Length=239, Percent_Identity=25.9414225941423, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1786563, Length=211, Percent_Identity=28.436018957346, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788165, Length=219, Percent_Identity=28.310502283105, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87081834, Length=212, Percent_Identity=28.3018867924528, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788450, Length=241, Percent_Identity=28.2157676348548, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1787112, Length=230, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1790467, Length=217, Percent_Identity=26.2672811059908, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1787758, Length=235, Percent_Identity=27.2340425531915, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789032, Length=215, Percent_Identity=29.3023255813954, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788506, Length=218, Percent_Identity=25.6880733944954, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI48994997, Length=228, Percent_Identity=27.6315789473684, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787500, Length=250, Percent_Identity=27.2, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787164, Length=214, Percent_Identity=30.8411214953271, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1786654, Length=183, Percent_Identity=28.4153005464481, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI145693107, Length=225, Percent_Identity=28, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1786703, Length=213, Percent_Identity=30.0469483568075, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115533608, Length=193, Percent_Identity=30.0518134715026, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17565586, Length=201, Percent_Identity=28.3582089552239, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI71983523, Length=202, Percent_Identity=27.2277227722772, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71983516, Length=202, Percent_Identity=27.2277227722772, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71983510, Length=202, Percent_Identity=27.2277227722772, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17510237, Length=214, Percent_Identity=26.1682242990654, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71988343, Length=226, Percent_Identity=26.5486725663717, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193209708, Length=227, Percent_Identity=26.431718061674, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17541710, Length=172, Percent_Identity=30.8139534883721, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71996809, Length=172, Percent_Identity=26.1627906976744, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193211017, Length=156, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193211015, Length=172, Percent_Identity=26.1627906976744, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=244, Percent_Identity=24.5901639344262, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115534520, Length=173, Percent_Identity=27.7456647398844, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115533592, Length=176, Percent_Identity=30.1136363636364, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI212646699, Length=228, Percent_Identity=25, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=199, Percent_Identity=28.643216080402, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI24666092, Length=214, Percent_Identity=30.8411214953271, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI221512771, Length=220, Percent_Identity=28.1818181818182, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24648314, Length=216, Percent_Identity=28.7037037037037, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24643674, Length=217, Percent_Identity=26.7281105990783, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI28574150, Length=197, Percent_Identity=29.9492385786802, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI116007328, Length=197, Percent_Identity=29.9492385786802, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI28573573, Length=226, Percent_Identity=26.5486725663717, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28573571, Length=226, Percent_Identity=26.5486725663717, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21357907, Length=170, Percent_Identity=30.5882352941176, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI28571209, Length=196, Percent_Identity=26.0204081632653, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI116007184, Length=207, Percent_Identity=25.6038647342995, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI221500365, Length=207, Percent_Identity=25.6038647342995, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25452; Mature: 25321
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALLQVSDVSVSYGKVEAVRSVTLEVRAREIVTVIGANGAGKTTLLNATMGIFPLKGGV CCCEEEEECCCCCHHHHHHHHHHHHEEEHEEEEEEEECCCCCCEEEEEEEECEEECCCCC TFDGVDIASLDIEDRVAAGLSLVPEHRELFATMTVEDNLELGAFRIAKATAARSQERVYG EECCCEEEECCHHHHHHHCCCCCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH LFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLDEPSLGLAPIIVADIFRIIGE HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH LREAGVSVLLVEQNAKAALQIADRAYVMELGEFVLDGPASDVAQNEQVVASYLGFSHPA HHHCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHCCCCCC >Mature Secondary Structure SALLQVSDVSVSYGKVEAVRSVTLEVRAREIVTVIGANGAGKTTLLNATMGIFPLKGGV CCEEEEECCCCCHHHHHHHHHHHHEEEHEEEEEEEECCCCCCEEEEEEEECEEECCCCC TFDGVDIASLDIEDRVAAGLSLVPEHRELFATMTVEDNLELGAFRIAKATAARSQERVYG EECCCEEEECCHHHHHHHCCCCCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH LFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLDEPSLGLAPIIVADIFRIIGE HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH LREAGVSVLLVEQNAKAALQIADRAYVMELGEFVLDGPASDVAQNEQVVASYLGFSHPA HHHCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]