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The map label for this gene is yncD [H]

Identifier: 86750662

GI number: 86750662

Start: 4065589

End: 4067802

Strand: Reverse

Name: yncD [H]

Synonym: RPB_3552

Alternate gene names: 86750662

Gene position: 4067802-4065589 (Counterclockwise)

Preceding gene: 86750663

Following gene: 162138520

Centisome position: 76.3

GC content: 65.13

Gene sequence:

>2214_bases
ATGTCGTCCGCTCGTCCGCGGTCGCGCAGCCTCGTGCTGCTGCAGGCCACTGCGCTCGTTTCCACTTGTCTTGTTTCGCT
GCCGGCGATGGCACAGAGCCCTCGCGACGGCACTTTGCCGCCGGTGACGGTGCAGGCGCCGGATCAGGCCCGCCCGGCCG
TGCCGCGCGCGCAGCGCAGCCCGTCGCGGGCGACGCGAGCGGTGCGCGCCACCAGCCCGGCGCCGTTGCCGGCCGCCGCA
CCGGTCGACAGCGCGCAGGCGGCGAGAGGCCCGGCGTTGACCGTGCTCACGGTGCAGCAGGCCTTGAACGACATTCAGCA
GACGCCCGGCGGCGTCGCGCTGGTGCCCGCCAACGCCTATCGCAACTCGACGGTGTCCAACACCATCAAGGACATTCTCG
ACTACGTGCCGGGCGTATTCGCGCAGCCGAAATGGGGCGACGACACCAGGCTGTCGATCCGCGGCTCGGGGCTGTCGCGC
AACTTCCATCTGCGCGGCGTGCAGCTCTACATGGACGGCATTCCGATCAACACCGCGGACGGCTATGGTGATTTTCAGGA
GATCGACCCCACCGCGTACAAATACGTCGCGGTCTACAAGGGCGCCAACGCGCTGCAGTTCGGCGCCAATTCGCTCGGCG
GCGCGATCAATTTCGTCACCGCGACCGGCCGCGATCCGTTCCCGAACGGCGTGAGCGTCGACGCCGGTGCGTTCGGCTAT
CGCCGGCTGCAGGCCAATGCCGGTGGCGTCAACGGCCCGTGGGACGGCTATGTCACCGCCTCGACGCAGGCGGCTGAAGG
TTTCCGCAACCACAGCGACGGCGAGGCCCACCGGCTCAGCGCCAATATCGGCTACCAGATCACGCCGGACATCGAGACCC
GGTTCTATCTCAACGCCAATCACGTCCGGCAGCGGATCCCCGGCAGCGTCACCAAGACCTCGGCGCTGACCTCGCCGGAA
ACAGCCGCAGCCAACAACGTCGCGCTCGACCAGCAGCGCAACATCGACACGGTGCGGCTCGCCAACAAGACCACGATCCG
GTTCGACAACACGGTGGTCGATTTCGGCGCCTTCGGCGTCGATCGCCACCTGATGCATCCGATCTTCCAGTGGCTGGACT
ATCGCTATCAGGACTATGGCGGCTTCGCCAAAGTCACCGACGATCGCTTCATCGGCGGCTATCGCAACCGTCTGGTCGCC
GGCGTCAACCTGCTCAACGGTCGGATCGACAACAAGCAATACGTCAACCTCGCCGGGCAGAAGGGTGCGCTGGCGTTCTC
GTCGATCGACAAATCCACCAACACGTCGTTCTACGTCGAGGACTCGTTCTATTTCCTGCGCAACGTTGCGCTGGTCGCCG
GCACGCAGTTCCTGCACGCCACCCGTGACCGGGTCGTCCGATTCACGTCGAACAACGATCCGTCGGGGACGACGGAGTTC
AACTTATGGAGTCCCAAGGCTGGGTTGTTGTGGGACATCGATCCGACCTGGCAGGCGTTCGGGAACATCTCGCGGAGCGC
CGAAGTGCCGAGCTTCGGCGAGAGCTCTGCAGCGCAGTCGATTCCCTTCACCAGCATCCGGCCGCAGCGTGCGACGACTT
ACGAGATCGGCACCCGTGGCCGTCGGCCCGATCTGGTCTGGGAGCTGACCGGCTATCGCGCCGAGATCAAGGACGAGCTG
CTCTGCATCTACAGTTCGTTAGGCAATTGCAACGTGACCAACGCCGATCGCAGCGTGCATCAGGGCATCGAGGCCGGGCT
CGGCGTCGCGCTGTTCAAGAACCTGTTCGAGCGAGGACACGCGCCCGACCGGCTGTGGCTGAACATGGCCTACACGCTGA
ACGACTTCCGCTTCGACAACGATGCGACCTTCGGCAACAATCTGCTGCCCGGCGCGCCGCGGCACTATCTGCGCGCCGAA
TTGCTCTACAAGAATCCGAACGGGTTCTATGCCGGCCCGAACGTGGAGTGGGTGCCGCAGGCCTATTTCGTCGACAGCGC
CAACACGCTGAAGACCGAGCCCTATGCGCTGCTCGGCCTCAAGGCGGGGATCGACAATGGCGGGCCGTACTCGATCTATA
TCGAGGGCCGCAACCTCACCAACAAGGCCTACATCGCCTCCGCCAGCATCATCGACAAGGCCACCGCGACCTCGCCTCTG
TTCGAACCGGGCACCGGACGCGCGGTCTATGCCGGCTTCAAGGTGCGCTGGTGA

Upstream 100 bases:

>100_bases
GAGCCGCGATCACCAGCCGCGTGGACCTCCGGCCCTGAGCTGACGACCTGCGCCTGTCGGCGCGCCTTGTTCTCGTCATC
TCGGTTTCCGGAGTCTATCC

Downstream 100 bases:

>100_bases
TGCACGTCAGGATGCGGCGGCGATCAGCTCCGCCGGCGGCGCGATGAGGTGACGAGTCGTCGGCCGCTCAGGCGGCCGGC
GCCTTGGTTGCGGCGCTGGA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 737; Mature: 736

Protein sequence:

>737_residues
MSSARPRSRSLVLLQATALVSTCLVSLPAMAQSPRDGTLPPVTVQAPDQARPAVPRAQRSPSRATRAVRATSPAPLPAAA
PVDSAQAARGPALTVLTVQQALNDIQQTPGGVALVPANAYRNSTVSNTIKDILDYVPGVFAQPKWGDDTRLSIRGSGLSR
NFHLRGVQLYMDGIPINTADGYGDFQEIDPTAYKYVAVYKGANALQFGANSLGGAINFVTATGRDPFPNGVSVDAGAFGY
RRLQANAGGVNGPWDGYVTASTQAAEGFRNHSDGEAHRLSANIGYQITPDIETRFYLNANHVRQRIPGSVTKTSALTSPE
TAAANNVALDQQRNIDTVRLANKTTIRFDNTVVDFGAFGVDRHLMHPIFQWLDYRYQDYGGFAKVTDDRFIGGYRNRLVA
GVNLLNGRIDNKQYVNLAGQKGALAFSSIDKSTNTSFYVEDSFYFLRNVALVAGTQFLHATRDRVVRFTSNNDPSGTTEF
NLWSPKAGLLWDIDPTWQAFGNISRSAEVPSFGESSAAQSIPFTSIRPQRATTYEIGTRGRRPDLVWELTGYRAEIKDEL
LCIYSSLGNCNVTNADRSVHQGIEAGLGVALFKNLFERGHAPDRLWLNMAYTLNDFRFDNDATFGNNLLPGAPRHYLRAE
LLYKNPNGFYAGPNVEWVPQAYFVDSANTLKTEPYALLGLKAGIDNGGPYSIYIEGRNLTNKAYIASASIIDKATATSPL
FEPGTGRAVYAGFKVRW

Sequences:

>Translated_737_residues
MSSARPRSRSLVLLQATALVSTCLVSLPAMAQSPRDGTLPPVTVQAPDQARPAVPRAQRSPSRATRAVRATSPAPLPAAA
PVDSAQAARGPALTVLTVQQALNDIQQTPGGVALVPANAYRNSTVSNTIKDILDYVPGVFAQPKWGDDTRLSIRGSGLSR
NFHLRGVQLYMDGIPINTADGYGDFQEIDPTAYKYVAVYKGANALQFGANSLGGAINFVTATGRDPFPNGVSVDAGAFGY
RRLQANAGGVNGPWDGYVTASTQAAEGFRNHSDGEAHRLSANIGYQITPDIETRFYLNANHVRQRIPGSVTKTSALTSPE
TAAANNVALDQQRNIDTVRLANKTTIRFDNTVVDFGAFGVDRHLMHPIFQWLDYRYQDYGGFAKVTDDRFIGGYRNRLVA
GVNLLNGRIDNKQYVNLAGQKGALAFSSIDKSTNTSFYVEDSFYFLRNVALVAGTQFLHATRDRVVRFTSNNDPSGTTEF
NLWSPKAGLLWDIDPTWQAFGNISRSAEVPSFGESSAAQSIPFTSIRPQRATTYEIGTRGRRPDLVWELTGYRAEIKDEL
LCIYSSLGNCNVTNADRSVHQGIEAGLGVALFKNLFERGHAPDRLWLNMAYTLNDFRFDNDATFGNNLLPGAPRHYLRAE
LLYKNPNGFYAGPNVEWVPQAYFVDSANTLKTEPYALLGLKAGIDNGGPYSIYIEGRNLTNKAYIASASIIDKATATSPL
FEPGTGRAVYAGFKVRW
>Mature_736_residues
SSARPRSRSLVLLQATALVSTCLVSLPAMAQSPRDGTLPPVTVQAPDQARPAVPRAQRSPSRATRAVRATSPAPLPAAAP
VDSAQAARGPALTVLTVQQALNDIQQTPGGVALVPANAYRNSTVSNTIKDILDYVPGVFAQPKWGDDTRLSIRGSGLSRN
FHLRGVQLYMDGIPINTADGYGDFQEIDPTAYKYVAVYKGANALQFGANSLGGAINFVTATGRDPFPNGVSVDAGAFGYR
RLQANAGGVNGPWDGYVTASTQAAEGFRNHSDGEAHRLSANIGYQITPDIETRFYLNANHVRQRIPGSVTKTSALTSPET
AAANNVALDQQRNIDTVRLANKTTIRFDNTVVDFGAFGVDRHLMHPIFQWLDYRYQDYGGFAKVTDDRFIGGYRNRLVAG
VNLLNGRIDNKQYVNLAGQKGALAFSSIDKSTNTSFYVEDSFYFLRNVALVAGTQFLHATRDRVVRFTSNNDPSGTTEFN
LWSPKAGLLWDIDPTWQAFGNISRSAEVPSFGESSAAQSIPFTSIRPQRATTYEIGTRGRRPDLVWELTGYRAEIKDELL
CIYSSLGNCNVTNADRSVHQGIEAGLGVALFKNLFERGHAPDRLWLNMAYTLNDFRFDNDATFGNNLLPGAPRHYLRAEL
LYKNPNGFYAGPNVEWVPQAYFVDSANTLKTEPYALLGLKAGIDNGGPYSIYIEGRNLTNKAYIASASIIDKATATSPLF
EPGTGRAVYAGFKVRW

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=723, Percent_Identity=25.5878284923928, Blast_Score=162, Evalue=5e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 80272; Mature: 80140

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSARPRSRSLVLLQATALVSTCLVSLPAMAQSPRDGTLPPVTVQAPDQARPAVPRAQRS
CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCC
PSRATRAVRATSPAPLPAAAPVDSAQAARGPALTVLTVQQALNDIQQTPGGVALVPANAY
HHHHHHEEECCCCCCCCCCCCCCCHHHCCCCEEEEEEHHHHHHHHHHCCCCEEEEECCHH
RNSTVSNTIKDILDYVPGVFAQPKWGDDTRLSIRGSGLSRNFHLRGVQLYMDGIPINTAD
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCC
GYGDFQEIDPTAYKYVAVYKGANALQFGANSLGGAINFVTATGRDPFPNGVSVDAGAFGY
CCCCHHHCCCCCEEEEEEECCCCEEECCCCCCCCEEEEEEECCCCCCCCCCEECCCCCCE
RRLQANAGGVNGPWDGYVTASTQAAEGFRNHSDGEAHRLSANIGYQITPDIETRFYLNAN
EEEECCCCCCCCCCCCEEEECCHHHHHHCCCCCCCEEEEEECCCEEECCCCCEEEEECHH
HVRQRIPGSVTKTSALTSPETAAANNVALDQQRNIDTVRLANKTTIRFDNTVVDFGAFGV
HHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCEEEEECCEEEECCCCCC
DRHLMHPIFQWLDYRYQDYGGFAKVTDDRFIGGYRNRLVAGVNLLNGRIDNKQYVNLAGQ
CHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCC
KGALAFSSIDKSTNTSFYVEDSFYFLRNVALVAGTQFLHATRDRVVRFTSNNDPSGTTEF
CCCEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEE
NLWSPKAGLLWDIDPTWQAFGNISRSAEVPSFGESSAAQSIPFTSIRPQRATTYEIGTRG
EEECCCCCCEEECCHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCCC
RRPDLVWELTGYRAEIKDELLCIYSSLGNCNVTNADRSVHQGIEAGLGVALFKNLFERGH
CCCCEEEEECCCCHHHHHHHHEEECCCCCCEECCCHHHHHHHHHHCHHHHHHHHHHHHCC
APDRLWLNMAYTLNDFRFDNDATFGNNLLPGAPRHYLRAELLYKNPNGFYAGPNVEWVPQ
CCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHEEEEEEECCCCEECCCCCCCCCC
AYFVDSANTLKTEPYALLGLKAGIDNGGPYSIYIEGRNLTNKAYIASASIIDKATATSPL
EEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCEEEEEHHHHHHCCCCCCC
FEPGTGRAVYAGFKVRW
CCCCCCCEEEEEEEEEC
>Mature Secondary Structure 
SSARPRSRSLVLLQATALVSTCLVSLPAMAQSPRDGTLPPVTVQAPDQARPAVPRAQRS
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCC
PSRATRAVRATSPAPLPAAAPVDSAQAARGPALTVLTVQQALNDIQQTPGGVALVPANAY
HHHHHHEEECCCCCCCCCCCCCCCHHHCCCCEEEEEEHHHHHHHHHHCCCCEEEEECCHH
RNSTVSNTIKDILDYVPGVFAQPKWGDDTRLSIRGSGLSRNFHLRGVQLYMDGIPINTAD
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCC
GYGDFQEIDPTAYKYVAVYKGANALQFGANSLGGAINFVTATGRDPFPNGVSVDAGAFGY
CCCCHHHCCCCCEEEEEEECCCCEEECCCCCCCCEEEEEEECCCCCCCCCCEECCCCCCE
RRLQANAGGVNGPWDGYVTASTQAAEGFRNHSDGEAHRLSANIGYQITPDIETRFYLNAN
EEEECCCCCCCCCCCCEEEECCHHHHHHCCCCCCCEEEEEECCCEEECCCCCEEEEECHH
HVRQRIPGSVTKTSALTSPETAAANNVALDQQRNIDTVRLANKTTIRFDNTVVDFGAFGV
HHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCEEEEECCEEEECCCCCC
DRHLMHPIFQWLDYRYQDYGGFAKVTDDRFIGGYRNRLVAGVNLLNGRIDNKQYVNLAGQ
CHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCC
KGALAFSSIDKSTNTSFYVEDSFYFLRNVALVAGTQFLHATRDRVVRFTSNNDPSGTTEF
CCCEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEE
NLWSPKAGLLWDIDPTWQAFGNISRSAEVPSFGESSAAQSIPFTSIRPQRATTYEIGTRG
EEECCCCCCEEECCHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCCC
RRPDLVWELTGYRAEIKDELLCIYSSLGNCNVTNADRSVHQGIEAGLGVALFKNLFERGH
CCCCEEEEECCCCHHHHHHHHEEECCCCCCEECCCHHHHHHHHHHCHHHHHHHHHHHHCC
APDRLWLNMAYTLNDFRFDNDATFGNNLLPGAPRHYLRAELLYKNPNGFYAGPNVEWVPQ
CCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHEEEEEEECCCCEECCCCCCCCCC
AYFVDSANTLKTEPYALLGLKAGIDNGGPYSIYIEGRNLTNKAYIASASIIDKATATSPL
EEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCEEEEEHHHHHHCCCCCCC
FEPGTGRAVYAGFKVRW
CCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]