| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86750579
Identifier: 86750579
GI number: 86750579
Start: 3974344
End: 3974913
Strand: Reverse
Name: 86750579
Synonym: RPB_3468
Alternate gene names: NA
Gene position: 3974913-3974344 (Counterclockwise)
Preceding gene: 86750582
Following gene: 86750578
Centisome position: 74.55
GC content: 73.16
Gene sequence:
>570_bases ATGTCGGCGATTTTGCTGGCGGGGCCGGTGGTGGAGCCGTGGACGGTTCCCGAGCTGAAGGCGTTCCTGCGCGTCGCGCA CGACGACGACGATTCGGTGATCGCGTCGCTGCTCGCCGCCGCGCGCGCCCAGATCGAGGCGATGACGCGGCGCGCGCTGC TGTCGCAGAGCTGGCGGATCACGCGCGACGCCTGGCCGCGCGACGGCCGGCTCGCGCTGCGGATCGGGCCGCTGCGGGCG CTGAGCGCGGCGCGGGTGTTCGATGCCGAAGGCATTGCGCATGAGGTCGATCTCGCGCGCTTCGTGATCGACGTCGCGGG CGGCACGATCGCCGCGCCGGCGTGGTCGGTGCCACAGCCGGGGCGCAGCGTCGGCGGCATCGCGCTCGACCTCGAGCTCG GCTACGGCACGCAACCTTCCGAGGTGCCGGAGCTGCTGCGCCATGCGGTGCGCACGCTGGCGGCGCATTGGTACGACAAT CGCGGGCTGGCGGCGATCGGCTCCAGCGTGGCGATGCTGCCGGGCAGCGTCGCGGCGATGATCGCGAGCTTCCGGGTGCC GGCGCTATGA
Upstream 100 bases:
>100_bases GGCGGCGATCAGAACGGCAAGTGTCGAGCGGCGGATCATGGCGGGCTTTGAGCCTCGCCGCCGCCGCGCTGTCAACCTGA ACATTTCGGAGGGATGAGCA
Downstream 100 bases:
>100_bases TCGATCCGGGCCGACTGAACACGCGGCTGGTGCTGGAAGTGCCGGTCGAGAGCGGCGACGGCCAGGGCGGGGTGACGCGC AGCTATGCGCCGCAGCAAGT
Product: bacteriophage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MSAILLAGPVVEPWTVPELKAFLRVAHDDDDSVIASLLAAARAQIEAMTRRALLSQSWRITRDAWPRDGRLALRIGPLRA LSAARVFDAEGIAHEVDLARFVIDVAGGTIAAPAWSVPQPGRSVGGIALDLELGYGTQPSEVPELLRHAVRTLAAHWYDN RGLAAIGSSVAMLPGSVAAMIASFRVPAL
Sequences:
>Translated_189_residues MSAILLAGPVVEPWTVPELKAFLRVAHDDDDSVIASLLAAARAQIEAMTRRALLSQSWRITRDAWPRDGRLALRIGPLRA LSAARVFDAEGIAHEVDLARFVIDVAGGTIAAPAWSVPQPGRSVGGIALDLELGYGTQPSEVPELLRHAVRTLAAHWYDN RGLAAIGSSVAMLPGSVAAMIASFRVPAL >Mature_188_residues SAILLAGPVVEPWTVPELKAFLRVAHDDDDSVIASLLAAARAQIEAMTRRALLSQSWRITRDAWPRDGRLALRIGPLRAL SAARVFDAEGIAHEVDLARFVIDVAGGTIAAPAWSVPQPGRSVGGIALDLELGYGTQPSEVPELLRHAVRTLAAHWYDNR GLAAIGSSVAMLPGSVAAMIASFRVPAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20086; Mature: 19955
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAILLAGPVVEPWTVPELKAFLRVAHDDDDSVIASLLAAARAQIEAMTRRALLSQSWRI CCCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TRDAWPRDGRLALRIGPLRALSAARVFDAEGIAHEVDLARFVIDVAGGTIAAPAWSVPQP CCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCC GRSVGGIALDLELGYGTQPSEVPELLRHAVRTLAAHWYDNRGLAAIGSSVAMLPGSVAAM CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCHHHHHH IASFRVPAL HHHHCCCCC >Mature Secondary Structure SAILLAGPVVEPWTVPELKAFLRVAHDDDDSVIASLLAAARAQIEAMTRRALLSQSWRI CCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TRDAWPRDGRLALRIGPLRALSAARVFDAEGIAHEVDLARFVIDVAGGTIAAPAWSVPQP CCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCC GRSVGGIALDLELGYGTQPSEVPELLRHAVRTLAAHWYDNRGLAAIGSSVAMLPGSVAAM CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCHHHHHH IASFRVPAL HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA