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The map label for this gene is ccmH [H]

Identifier: 86750558

GI number: 86750558

Start: 3952800

End: 3953300

Strand: Reverse

Name: ccmH [H]

Synonym: RPB_3447

Alternate gene names: 86750558

Gene position: 3953300-3952800 (Counterclockwise)

Preceding gene: 86750559

Following gene: 86750557

Centisome position: 74.15

GC content: 69.46

Gene sequence:

>501_bases
GTGCGAAAGCTCGCGACAATCATATGCCTCGCCATCACGATGCTGGCCGTCGCCATCCCGCTGGCGCACGCCGTGCAGCC
CGACGAGGTGATGACCGATCCGGCGCAGGAGGCGCGGGCGCGGGAATTGTCGCGCGAACTGCGCTGCATGGTCTGTCAGA
ACCAGTCGATCGACGATTCCGATGCGACGCTCGCCAAGGATCTGCGGCTGCTGGTGCGCGAGCGGATCGCGGCCGGCGAC
AGCAACAATCAGGTGCTGGACTATCTGGTCGCGCGCTACGGCGAGTTCGTGCTGCTGAAGCCGCGGTTCGAAAGCCACAC
GCTGGTGCTGTGGCTGGTGACGCCGCTGGTGCTGTTCGGCGGCGGGCTGGCGCTGTGGCTGCACGTCCGCCGCCGCGCCC
GCGGCGCGGCCCGTGAGCTGGAGACGACGCAACCGCTCAGCGCCGAGGAGCAGGCGCGGCTCGATCGGCTGATGGCGGAG
GGGCCGGATCGGTCGGCGTAG

Upstream 100 bases:

>100_bases
GCTCGTCAGAGCGAAGACGGGCGTCTCGAAGGATGTGCCACAACAACTGATCCTTCGAGACGCATCCTGCGGATGCTCCT
CAGGATGACGGGAGCGTACG

Downstream 100 bases:

>100_bases
CGTCATGCGCCGCGGCCGGCGGCGAAGGGTGGACGCCCGTCGGCGTGATGCAGCGCACGTCCCGCAACAGCTTCGTTGCG
CTGGTCCTGGTCGGTCTGGC

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MRKLATIICLAITMLAVAIPLAHAVQPDEVMTDPAQEARARELSRELRCMVCQNQSIDDSDATLAKDLRLLVRERIAAGD
SNNQVLDYLVARYGEFVLLKPRFESHTLVLWLVTPLVLFGGGLALWLHVRRRARGAARELETTQPLSAEEQARLDRLMAE
GPDRSA

Sequences:

>Translated_166_residues
MRKLATIICLAITMLAVAIPLAHAVQPDEVMTDPAQEARARELSRELRCMVCQNQSIDDSDATLAKDLRLLVRERIAAGD
SNNQVLDYLVARYGEFVLLKPRFESHTLVLWLVTPLVLFGGGLALWLHVRRRARGAARELETTQPLSAEEQARLDRLMAE
GPDRSA
>Mature_166_residues
MRKLATIICLAITMLAVAIPLAHAVQPDEVMTDPAQEARARELSRELRCMVCQNQSIDDSDATLAKDLRLLVRERIAAGD
SNNQVLDYLVARYGEFVLLKPRFESHTLVLWLVTPLVLFGGGLALWLHVRRRARGAARELETTQPLSAEEQARLDRLMAE
GPDRSA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=97, Percent_Identity=45.360824742268, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 18543; Mature: 18543

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLATIICLAITMLAVAIPLAHAVQPDEVMTDPAQEARARELSRELRCMVCQNQSIDDS
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
DATLAKDLRLLVRERIAAGDSNNQVLDYLVARYGEFVLLKPRFESHTLVLWLVTPLVLFG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHC
GGLALWLHVRRRARGAARELETTQPLSAEEQARLDRLMAEGPDRSA
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRKLATIICLAITMLAVAIPLAHAVQPDEVMTDPAQEARARELSRELRCMVCQNQSIDDS
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
DATLAKDLRLLVRERIAAGDSNNQVLDYLVARYGEFVLLKPRFESHTLVLWLVTPLVLFG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHC
GGLALWLHVRRRARGAARELETTQPLSAEEQARLDRLMAEGPDRSA
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715601; 12597275 [H]