| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is nadE [H]
Identifier: 86750492
GI number: 86750492
Start: 3864911
End: 3866668
Strand: Reverse
Name: nadE [H]
Synonym: RPB_3381
Alternate gene names: 86750492
Gene position: 3866668-3864911 (Counterclockwise)
Preceding gene: 86750493
Following gene: 86750491
Centisome position: 72.52
GC content: 68.09
Gene sequence:
>1758_bases ATGACCAACACAGCCGCCCGTTTCACGATCTCGCTCGCCCAGCTCAATCCGACGGTCGGCGACATCACCGGCAACGCCGC GATGGCGCGCGCGGCGCGTGCGCAGGCCGCGGCCGAGAACGCCGATGTCATCGTCTTTCCCGAGCTGTTCATCTCCGGCT ATCCGCCGGAAGATCTGGTGCTGAAGCCGGCGTTTCAGGCCGCGTGCCGCGCGGCGGTCGAGGAACTGGCGCGCGAGACC GCCGATGGCGGGCCGGCAATGCTGATCGGCTCGCCCTGGGTCGACGGCGGCAAGCTCTACAACGCCTGCGCATTGCTCGA CGGCGGCCGCATCGCGGCGATCCGCTTCAAGGTCAATCTGCCGAACTACGGCGTGTTCGACGAGAAGCGCGTGTTCGCGC GCGGGCCGGTGGCGGGTCCGGTGACGATCCGCGGCGTCCGCGTCGGCGTGCCGATCTGCGAGGACACCTGGCTCGAGGAG TCCGAGGACTACGAGAACGTCGTCGAGTGCTTGGCCGAGACCGGCGCCGAAATCCTGATCGTGCCGAACGGCTCACCCTA CGCGCGCGGCAAGGGCGATCTGCGGCTGTCGGTGCAGGTCGCCCGCGTCACCGAGAGCGATCTGCCGCTGGTCTATCTCA ATCAGGTCGGCGGCCAGGACGAACTGGTGTTCGACGGCGCATCCTTTGCGCTCAACGCCGACCGCTCGCTCGCCGCGCAA CTCCCCGCCTTCGCCGAATGCATCACCACGCTGGTCTGGCAGAAGAGCGCGGATGGCTGGCGCTGCGATGGCCCGGTGGC GGCGGTGCCCGACGGCGACGAGGGCGACTACGCCGCCTGCGTGCTGGGGCTACGCGACTACGTCCGCAAGAACGGTTTCC CCGGTGTGCTGCTCGGCATCTCCGGCGGCATCGATTCCGCGCTGTGCGCCGCGATCGCGGTCGATGCGCTCGGCGCGGGC AGGGTCCGCGGCGTGATGCTGCCGTTCCGCTACACCGCGCAGATCTCGCTCGACGATGCCAGTAGGCTCGCGAATGCGCT GGGCTTCGGCTACGAGGTGCTGCCGATCGCTCAGGCGGTGGAAGGCTTCGAGGCGATCCTGGCGAAGCCGTTCGCCGGCC TCGCGCGCGACATCACCGAAGAAAACCTGCAGGCGCGCACCCGCGGCACGCTGCTGATGGCGATCTCCAACAAGACCGGC GCGATGGTGGTCACCACGGGTAACAAGTCGGAAATGAGCGTCGGCTACGCCACGCTGTATGGCGACATGAACGGCGGCTT CAATCCGATCAAGGACATCTACAAGACGCAAGTGTTCCGCCTCTCCAGCCTGCGCAATCGCTGGAAGCCCGACGGCGCGC TCGGCCCCGACGGTGAGGTGATCCCGGAAAGCATCATCGTCCGTCCGCCGACCGCGGAACTGCGTGAAAACCAGACCGAC CAGGATTCGCTGCCGCCCTACGAGGTGCTCGACGCCATCCTCGAACGCCTGGTCGAACGCGAGCAGCCGCTGGCGTCGAT CGTCGCCGAGGGCTTCGACAAGGACACCGTGATGCGGATCGACCGCCTCCTCAACATCGCCGAATACAAGCGCCGCCAGG CCGCCCCCGGCGTCAAGGTGACCCGCAAGAACTTCGGCCGCGACCGCCGCTACCCGATCACCAACCGTTTTCGCGACAAG GCCGAGGCGCTGGCCGAGCCGGACGAGGCGCTGGTGATGCGGGCAGGGCGTGCGTCGAGCGAGGCGTTCGAGGGGTAG
Upstream 100 bases:
>100_bases CCATTGCCGGGATGGTCTGGCTGTTCGCGCTCGGCGAGCGCATGGGGCTGTTCTAGTTCCCCCGATTGCGAAGCGGGCAG GGGGCGGCTAAATCTCGGTG
Downstream 100 bases:
>100_bases GAGGAAGTCATGGGCGCGGACTGCCAATCTTTCGCAGATGCCGGGCGCTCCGTTTGTTCGACTTGCAAAGGACCTGATGA GTGTGGCGATAGCCGATCCG
Product: NAD synthetase
Products: NA
Alternate protein names: NAD(+) synthase [glutamine-hydrolyzing] [H]
Number of amino acids: Translated: 585; Mature: 584
Protein sequence:
>585_residues MTNTAARFTISLAQLNPTVGDITGNAAMARAARAQAAAENADVIVFPELFISGYPPEDLVLKPAFQAACRAAVEELARET ADGGPAMLIGSPWVDGGKLYNACALLDGGRIAAIRFKVNLPNYGVFDEKRVFARGPVAGPVTIRGVRVGVPICEDTWLEE SEDYENVVECLAETGAEILIVPNGSPYARGKGDLRLSVQVARVTESDLPLVYLNQVGGQDELVFDGASFALNADRSLAAQ LPAFAECITTLVWQKSADGWRCDGPVAAVPDGDEGDYAACVLGLRDYVRKNGFPGVLLGISGGIDSALCAAIAVDALGAG RVRGVMLPFRYTAQISLDDASRLANALGFGYEVLPIAQAVEGFEAILAKPFAGLARDITEENLQARTRGTLLMAISNKTG AMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDIYKTQVFRLSSLRNRWKPDGALGPDGEVIPESIIVRPPTAELRENQTD QDSLPPYEVLDAILERLVEREQPLASIVAEGFDKDTVMRIDRLLNIAEYKRRQAAPGVKVTRKNFGRDRRYPITNRFRDK AEALAEPDEALVMRAGRASSEAFEG
Sequences:
>Translated_585_residues MTNTAARFTISLAQLNPTVGDITGNAAMARAARAQAAAENADVIVFPELFISGYPPEDLVLKPAFQAACRAAVEELARET ADGGPAMLIGSPWVDGGKLYNACALLDGGRIAAIRFKVNLPNYGVFDEKRVFARGPVAGPVTIRGVRVGVPICEDTWLEE SEDYENVVECLAETGAEILIVPNGSPYARGKGDLRLSVQVARVTESDLPLVYLNQVGGQDELVFDGASFALNADRSLAAQ LPAFAECITTLVWQKSADGWRCDGPVAAVPDGDEGDYAACVLGLRDYVRKNGFPGVLLGISGGIDSALCAAIAVDALGAG RVRGVMLPFRYTAQISLDDASRLANALGFGYEVLPIAQAVEGFEAILAKPFAGLARDITEENLQARTRGTLLMAISNKTG AMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDIYKTQVFRLSSLRNRWKPDGALGPDGEVIPESIIVRPPTAELRENQTD QDSLPPYEVLDAILERLVEREQPLASIVAEGFDKDTVMRIDRLLNIAEYKRRQAAPGVKVTRKNFGRDRRYPITNRFRDK AEALAEPDEALVMRAGRASSEAFEG >Mature_584_residues TNTAARFTISLAQLNPTVGDITGNAAMARAARAQAAAENADVIVFPELFISGYPPEDLVLKPAFQAACRAAVEELARETA DGGPAMLIGSPWVDGGKLYNACALLDGGRIAAIRFKVNLPNYGVFDEKRVFARGPVAGPVTIRGVRVGVPICEDTWLEES EDYENVVECLAETGAEILIVPNGSPYARGKGDLRLSVQVARVTESDLPLVYLNQVGGQDELVFDGASFALNADRSLAAQL PAFAECITTLVWQKSADGWRCDGPVAAVPDGDEGDYAACVLGLRDYVRKNGFPGVLLGISGGIDSALCAAIAVDALGAGR VRGVMLPFRYTAQISLDDASRLANALGFGYEVLPIAQAVEGFEAILAKPFAGLARDITEENLQARTRGTLLMAISNKTGA MVVTTGNKSEMSVGYATLYGDMNGGFNPIKDIYKTQVFRLSSLRNRWKPDGALGPDGEVIPESIIVRPPTAELRENQTDQ DSLPPYEVLDAILERLVEREQPLASIVAEGFDKDTVMRIDRLLNIAEYKRRQAAPGVKVTRKNFGRDRRYPITNRFRDKA EALAEPDEALVMRAGRASSEAFEG
Specific function: It is not known if this NAD synthase uses NH(3) or glutamine as the N donor [H]
COG id: COG0171
COG function: function code H; NAD synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CN hydrolase domain [H]
Homologues:
None
Paralogues:
None
Copy number: 100 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014445 - InterPro: IPR022310 - InterPro: IPR003694 - InterPro: IPR003010 - InterPro: IPR014729 [H]
Pfam domain/function: PF00795 CN_hydrolase; PF02540 NAD_synthase [H]
EC number: =6.3.5.1 [H]
Molecular weight: Translated: 62893; Mature: 62762
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: PS50263 CN_HYDROLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNTAARFTISLAQLNPTVGDITGNAAMARAARAQAAAENADVIVFPELFISGYPPEDLV CCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCE LKPAFQAACRAAVEELARETADGGPAMLIGSPWVDGGKLYNACALLDGGRIAAIRFKVNL ECHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHEEEEECCCEEEEEEEEEEC PNYGVFDEKRVFARGPVAGPVTIRGVRVGVPICEDTWLEESEDYENVVECLAETGAEILI CCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE VPNGSPYARGKGDLRLSVQVARVTESDLPLVYLNQVGGQDELVFDGASFALNADRSLAAQ EECCCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCEEECCCCEEECCCHHHHHH LPAFAECITTLVWQKSADGWRCDGPVAAVPDGDEGDYAACVLGLRDYVRKNGFPGVLLGI CHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE SGGIDSALCAAIAVDALGAGRVRGVMLPFRYTAQISLDDASRLANALGFGYEVLPIAQAV CCCCHHHHHHHHHHHHCCCCCEEEEEECEEEEEEEECCHHHHHHHHHCCCCHHHHHHHHH EGFEAILAKPFAGLARDITEENLQARTRGTLLMAISNKTGAMVVTTGNKSEMSVGYATLY HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCEEEEEEEE GDMNGGFNPIKDIYKTQVFRLSSLRNRWKPDGALGPDGEVIPESIIVRPPTAELRENQTD ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCC QDSLPPYEVLDAILERLVEREQPLASIVAEGFDKDTVMRIDRLLNIAEYKRRQAAPGVKV CCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE TRKNFGRDRRYPITNRFRDKAEALAEPDEALVMRAGRASSEAFEG HHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCC >Mature Secondary Structure TNTAARFTISLAQLNPTVGDITGNAAMARAARAQAAAENADVIVFPELFISGYPPEDLV CCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCE LKPAFQAACRAAVEELARETADGGPAMLIGSPWVDGGKLYNACALLDGGRIAAIRFKVNL ECHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHEEEEECCCEEEEEEEEEEC PNYGVFDEKRVFARGPVAGPVTIRGVRVGVPICEDTWLEESEDYENVVECLAETGAEILI CCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE VPNGSPYARGKGDLRLSVQVARVTESDLPLVYLNQVGGQDELVFDGASFALNADRSLAAQ EECCCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCEEECCCCEEECCCHHHHHH LPAFAECITTLVWQKSADGWRCDGPVAAVPDGDEGDYAACVLGLRDYVRKNGFPGVLLGI CHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE SGGIDSALCAAIAVDALGAGRVRGVMLPFRYTAQISLDDASRLANALGFGYEVLPIAQAV CCCCHHHHHHHHHHHHCCCCCEEEEEECEEEEEEEECCHHHHHHHHHCCCCHHHHHHHHH EGFEAILAKPFAGLARDITEENLQARTRGTLLMAISNKTGAMVVTTGNKSEMSVGYATLY HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCEEEEEEEE GDMNGGFNPIKDIYKTQVFRLSSLRNRWKPDGALGPDGEVIPESIIVRPPTAELRENQTD ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCC QDSLPPYEVLDAILERLVEREQPLASIVAEGFDKDTVMRIDRLLNIAEYKRRQAAPGVKV CCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE TRKNFGRDRRYPITNRFRDKAEALAEPDEALVMRAGRASSEAFEG HHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8431308; 8195100 [H]