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The map label for this gene is psd

Identifier: 86750478

GI number: 86750478

Start: 3849440

End: 3850138

Strand: Reverse

Name: psd

Synonym: RPB_3367

Alternate gene names: 86750478

Gene position: 3850138-3849440 (Counterclockwise)

Preceding gene: 86750479

Following gene: 86750477

Centisome position: 72.21

GC content: 67.38

Gene sequence:

>699_bases
ATGTCCGTCGTCAATTCTATCCGCGCCCAGATCCCGCCGATTCATCGGGAAGGCTATCCGTTCATCGGCGCGTTCGCGCT
CGCGACCCTGGTGCTGTTCCTGATCTGGGCCCCGCTCGGCTGGATCGGGACCGTGCTGACGATCTGGTGCCTGCTGTTCT
TTCGCGATCCGGTGCGGGTGACGCCGGTGCGTGAAGGTCTGGTGGTGGCCCCGGCCGATGGCCGGGTGTCGATGGTGGTG
CAGATCATTCCGCCGCCGGCGCTGGGGCTCGGCGACAAGCCGCTGCCGCGCGTCTCGATTTTCATGAGTGTGTTCAACTG
CCATGTGAACCGCAGCCCGGTGGCCGGCCGGGTCGAGCGCATCATCTATTCGCCGGGCAAGTTCATCAACGCCGAGCTCG
ACAAGGCGAGCGAGGACAACGAGCGCAACTCGCTGGTGATCTCGACGCCGGCCGGGCAGATCGGCGTGGTTCAGATCGCC
GGGCTGGTGGCGCGGCGGATCGTCGCGTTCGTCCGCGAGGGCCAGCCGCTGGCGGCCGGCGAGCGGTTCGGCCTGATCCG
GTTCGGATCGCGGCTCGACGTTTACCTGCCGGAAGGCGCCAAGCCGCTAGTGTCCGAAGGGCAGACGGCGATCGCCGGCG
AAACCGTGCTGGCGGATTTCAGCCTCGGCGACGGTGGCCGGACCTATCGGGCCGATTGA

Upstream 100 bases:

>100_bases
TCGTTCGCCGGCGATCGACGACGATCTGGCAACTTCCGCGGCGGCGGAGTAATCGTGTTGCAGCTTTCGGCCACCCGTTT
TTGAAGTCAGGGGACTTTCC

Downstream 100 bases:

>100_bases
CGCTGTCGGGGGTGTCGGCCTGAAGGCTGCCATGATGGCGGCCGAGGATGAGGATTGCGAGATCAGGGCGATGCCGATGC
AGTATGACGAGACCCCACCC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSVVNSIRAQIPPIHREGYPFIGAFALATLVLFLIWAPLGWIGTVLTIWCLLFFRDPVRVTPVREGLVVAPADGRVSMVV
QIIPPPALGLGDKPLPRVSIFMSVFNCHVNRSPVAGRVERIIYSPGKFINAELDKASEDNERNSLVISTPAGQIGVVQIA
GLVARRIVAFVREGQPLAAGERFGLIRFGSRLDVYLPEGAKPLVSEGQTAIAGETVLADFSLGDGGRTYRAD

Sequences:

>Translated_232_residues
MSVVNSIRAQIPPIHREGYPFIGAFALATLVLFLIWAPLGWIGTVLTIWCLLFFRDPVRVTPVREGLVVAPADGRVSMVV
QIIPPPALGLGDKPLPRVSIFMSVFNCHVNRSPVAGRVERIIYSPGKFINAELDKASEDNERNSLVISTPAGQIGVVQIA
GLVARRIVAFVREGQPLAAGERFGLIRFGSRLDVYLPEGAKPLVSEGQTAIAGETVLADFSLGDGGRTYRAD
>Mature_231_residues
SVVNSIRAQIPPIHREGYPFIGAFALATLVLFLIWAPLGWIGTVLTIWCLLFFRDPVRVTPVREGLVVAPADGRVSMVVQ
IIPPPALGLGDKPLPRVSIFMSVFNCHVNRSPVAGRVERIIYSPGKFINAELDKASEDNERNSLVISTPAGQIGVVQIAG
LVARRIVAFVREGQPLAAGERFGLIRFGSRLDVYLPEGAKPLVSEGQTAIAGETVLADFSLGDGGRTYRAD

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_RHOP2 (Q2IUP7)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_486974.1
- STRING:   Q2IUP7
- GeneID:   3911169
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_3367
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   RPAL316058:RPB_3367-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 25042; Mature: 24910

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVNSIRAQIPPIHREGYPFIGAFALATLVLFLIWAPLGWIGTVLTIWCLLFFRDPVRV
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
TPVREGLVVAPADGRVSMVVQIIPPPALGLGDKPLPRVSIFMSVFNCHVNRSPVAGRVER
EECCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
IIYSPGKFINAELDKASEDNERNSLVISTPAGQIGVVQIAGLVARRIVAFVREGQPLAAG
HHCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
ERFGLIRFGSRLDVYLPEGAKPLVSEGQTAIAGETVLADFSLGDGGRTYRAD
CCEEEEEECCEEEEEECCCCCHHHHCCCEEECCCEEEEEEECCCCCCEECCC
>Mature Secondary Structure 
SVVNSIRAQIPPIHREGYPFIGAFALATLVLFLIWAPLGWIGTVLTIWCLLFFRDPVRV
CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
TPVREGLVVAPADGRVSMVVQIIPPPALGLGDKPLPRVSIFMSVFNCHVNRSPVAGRVER
EECCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
IIYSPGKFINAELDKASEDNERNSLVISTPAGQIGVVQIAGLVARRIVAFVREGQPLAAG
HHCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
ERFGLIRFGSRLDVYLPEGAKPLVSEGQTAIAGETVLADFSLGDGGRTYRAD
CCEEEEEECCEEEEEECCCCCHHHHCCCEEECCCEEEEEEECCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA