BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is vdlC [H]

Identifier: 86750449

GI number: 86750449

Start: 3818845

End: 3819696

Strand: Reverse

Name: vdlC [H]

Synonym: RPB_3338

Alternate gene names: 86750449

Gene position: 3819696-3818845 (Counterclockwise)

Preceding gene: 86750450

Following gene: 86750446

Centisome position: 71.64

GC content: 67.25

Gene sequence:

>852_bases
ATGAAGTCTGTCGTCGTCACCGGGGTGTCCAGCGGGATCGGTCACGCCATCGCGAAACTGCTGCTGGACAAGGGTTTTCG
CGTATTCGGCAGCGTCCGCAAGCCGGCCGATGCGGAGCGGCTGATCCACGAATTCGGGGCGAACTTCACGCCACTGATTT
TCGACGTCACCGACGAGGCCGCGATTCGGGCGGCGGCGGGCGAGGTCCGGGCGGCGCTCGGCGGTGAGCGGCTCGCCGGC
CTGGTCAACAATGCCGGCATCGCGGTGTCGGGGGCGGTGGTCGATCTGTCGGCCGACGACTTCCGACGGCAGTTCGAGGT
CAATGTGATCGGCCCGATCGTGGCGACGCAGGCATTCGCGCCGCTGCTGGGCACCGACGATACGCTGCGCGGGCCGCCGG
GGCGGATCGTGATGATGTCGTCGATCGCAGGCCGGTTCGGCAATCCGCTGATGGCGGCTTACTCCGCGTCGAAACACGCG
CTCAACGGCCTGTCGGACGGGCTGCGCCGCGAGATGATGCTGTTCGGCATCGACGTGGTGATCATCGCGCCCGGCGCGGT
CAAGACGCCGATCTGGGCCAAGGCCGAGCACGAGGACGTATCGCGCTTCGCCAACTCACCGTTCTATCCGGCGCTGCAGA
CGATCCGCGCGATGCTGCCGAAGATGGACCAAAGCGGCCTGCCGCCGGAGACGATCGCGCAGCATGTGTTCGATGCGCTG
ACATCGCCGTCGCCGAAGGCCCACGATGTGATCACGCCGGGACCGCTGCAGTTCTGGCTGTCGACCAAGCTGCCGCCGCG
GTGGATCGACAAGGTGGTGGCAAAGCGGCTCGGGCTGCGGCCCGCGAAGTAA

Upstream 100 bases:

>100_bases
CGCAAGACTTCGCGTAGCATTCGATGCGAACGGGACCGCGGTGACGCGGTCCCGTCTTGCTGTGATAGGGTCGCGGCGCA
TTGGGGCACGGAGTTGAGCC

Downstream 100 bases:

>100_bases
GCGCGCGGCGATCAGCGCGCCTTGATGCCGTCCCACAGCGCCCGCGCCACCGCGTCGGGCGTGCCGTCGCCGCCGCCCGA
GGCGGCGCGCAGATTGGCGG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKSVVVTGVSSGIGHAIAKLLLDKGFRVFGSVRKPADAERLIHEFGANFTPLIFDVTDEAAIRAAAGEVRAALGGERLAG
LVNNAGIAVSGAVVDLSADDFRRQFEVNVIGPIVATQAFAPLLGTDDTLRGPPGRIVMMSSIAGRFGNPLMAAYSASKHA
LNGLSDGLRREMMLFGIDVVIIAPGAVKTPIWAKAEHEDVSRFANSPFYPALQTIRAMLPKMDQSGLPPETIAQHVFDAL
TSPSPKAHDVITPGPLQFWLSTKLPPRWIDKVVAKRLGLRPAK

Sequences:

>Translated_283_residues
MKSVVVTGVSSGIGHAIAKLLLDKGFRVFGSVRKPADAERLIHEFGANFTPLIFDVTDEAAIRAAAGEVRAALGGERLAG
LVNNAGIAVSGAVVDLSADDFRRQFEVNVIGPIVATQAFAPLLGTDDTLRGPPGRIVMMSSIAGRFGNPLMAAYSASKHA
LNGLSDGLRREMMLFGIDVVIIAPGAVKTPIWAKAEHEDVSRFANSPFYPALQTIRAMLPKMDQSGLPPETIAQHVFDAL
TSPSPKAHDVITPGPLQFWLSTKLPPRWIDKVVAKRLGLRPAK
>Mature_283_residues
MKSVVVTGVSSGIGHAIAKLLLDKGFRVFGSVRKPADAERLIHEFGANFTPLIFDVTDEAAIRAAAGEVRAALGGERLAG
LVNNAGIAVSGAVVDLSADDFRRQFEVNVIGPIVATQAFAPLLGTDDTLRGPPGRIVMMSSIAGRFGNPLMAAYSASKHA
LNGLSDGLRREMMLFGIDVVIIAPGAVKTPIWAKAEHEDVSRFANSPFYPALQTIRAMLPKMDQSGLPPETIAQHVFDAL
TSPSPKAHDVITPGPLQFWLSTKLPPRWIDKVVAKRLGLRPAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=257, Percent_Identity=34.2412451361868, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI22507405, Length=202, Percent_Identity=35.1485148514851, Blast_Score=114, Evalue=7e-26,
Organism=Homo sapiens, GI40548397, Length=273, Percent_Identity=28.5714285714286, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI214010158, Length=273, Percent_Identity=28.5714285714286, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI214010156, Length=273, Percent_Identity=28.5714285714286, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI22758144, Length=273, Percent_Identity=28.5714285714286, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI150247226, Length=197, Percent_Identity=35.5329949238579, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI19743808, Length=245, Percent_Identity=31.8367346938775, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI50726952, Length=189, Percent_Identity=37.5661375661376, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI44680136, Length=190, Percent_Identity=33.1578947368421, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI44680133, Length=190, Percent_Identity=33.1578947368421, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI17738292, Length=190, Percent_Identity=33.1578947368421, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=34.6938775510204, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI4504503, Length=210, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI223718074, Length=259, Percent_Identity=30.5019305019305, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI40254992, Length=259, Percent_Identity=29.3436293436293, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=27.3809523809524, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI157739938, Length=199, Percent_Identity=29.6482412060301, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI119392083, Length=192, Percent_Identity=34.8958333333333, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4503817, Length=199, Percent_Identity=30.6532663316583, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI32455239, Length=206, Percent_Identity=31.0679611650485, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI5031765, Length=206, Percent_Identity=31.0679611650485, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI4758504, Length=214, Percent_Identity=28.9719626168224, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI15277342, Length=209, Percent_Identity=29.1866028708134, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI7657478, Length=200, Percent_Identity=28.5, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1786701, Length=276, Percent_Identity=34.0579710144928, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787335, Length=190, Percent_Identity=32.6315789473684, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082100, Length=208, Percent_Identity=33.1730769230769, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789378, Length=197, Percent_Identity=32.48730964467, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI2367175, Length=199, Percent_Identity=33.1658291457286, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788459, Length=191, Percent_Identity=29.8429319371728, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI2367365, Length=192, Percent_Identity=34.375, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082160, Length=192, Percent_Identity=28.125, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786812, Length=202, Percent_Identity=31.1881188118812, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789057, Length=202, Percent_Identity=26.2376237623762, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=299, Percent_Identity=25.752508361204, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17557780, Length=199, Percent_Identity=35.1758793969849, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17507613, Length=271, Percent_Identity=28.0442804428044, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32563809, Length=271, Percent_Identity=28.0442804428044, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71997402, Length=202, Percent_Identity=31.6831683168317, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI193210355, Length=200, Percent_Identity=30.5, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17570069, Length=206, Percent_Identity=30.5825242718447, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508895, Length=197, Percent_Identity=28.4263959390863, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=243, Percent_Identity=30.4526748971193, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17559964, Length=223, Percent_Identity=30.9417040358744, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17559962, Length=222, Percent_Identity=29.2792792792793, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI72001658, Length=216, Percent_Identity=30.0925925925926, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=191, Percent_Identity=28.2722513089005, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=246, Percent_Identity=29.6747967479675, Blast_Score=83, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=32.48730964467, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=198, Percent_Identity=30.3030303030303, Blast_Score=69, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=194, Percent_Identity=28.3505154639175, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21358495, Length=288, Percent_Identity=26.0416666666667, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI116007236, Length=201, Percent_Identity=32.3383084577114, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI281364494, Length=270, Percent_Identity=31.8518518518519, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI116007238, Length=204, Percent_Identity=29.9019607843137, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28571387, Length=199, Percent_Identity=31.1557788944724, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24651139, Length=299, Percent_Identity=25.4180602006689, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24643142, Length=192, Percent_Identity=32.8125, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641232, Length=200, Percent_Identity=32, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24639444, Length=195, Percent_Identity=31.2820512820513, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI17737361, Length=196, Percent_Identity=31.1224489795918, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19922066, Length=288, Percent_Identity=24.6527777777778, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641388, Length=203, Percent_Identity=34.9753694581281, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI116007234, Length=201, Percent_Identity=31.3432835820896, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21355319, Length=204, Percent_Identity=31.8627450980392, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=35.5670103092784, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30161; Mature: 30161

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSVVVTGVSSGIGHAIAKLLLDKGFRVFGSVRKPADAERLIHEFGANFTPLIFDVTDEA
CCCEEEECCHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCHH
AIRAAAGEVRAALGGERLAGLVNNAGIAVSGAVVDLSADDFRRQFEVNVIGPIVATQAFA
HHHHHHHHHHHHHCHHHHHHHHHCCCEEEECEEEECCHHHHHHHEECEEHHHHHHHHHHH
PLLGTDDTLRGPPGRIVMMSSIAGRFGNPLMAAYSASKHALNGLSDGLRREMMLFGIDVV
HHCCCCCCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
IIAPGAVKTPIWAKAEHEDVSRFANSPFYPALQTIRAMLPKMDQSGLPPETIAQHVFDAL
EECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
TSPSPKAHDVITPGPLQFWLSTKLPPRWIDKVVAKRLGLRPAK
CCCCCCCCCCCCCCCHHHEECCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKSVVVTGVSSGIGHAIAKLLLDKGFRVFGSVRKPADAERLIHEFGANFTPLIFDVTDEA
CCCEEEECCHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCHH
AIRAAAGEVRAALGGERLAGLVNNAGIAVSGAVVDLSADDFRRQFEVNVIGPIVATQAFA
HHHHHHHHHHHHHCHHHHHHHHHCCCEEEECEEEECCHHHHHHHEECEEHHHHHHHHHHH
PLLGTDDTLRGPPGRIVMMSSIAGRFGNPLMAAYSASKHALNGLSDGLRREMMLFGIDVV
HHCCCCCCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
IIAPGAVKTPIWAKAEHEDVSRFANSPFYPALQTIRAMLPKMDQSGLPPETIAQHVFDAL
EECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
TSPSPKAHDVITPGPLQFWLSTKLPPRWIDKVVAKRLGLRPAK
CCCCCCCCCCCCCCCHHHEECCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]