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The map label for this gene is rci [H]

Identifier: 86750236

GI number: 86750236

Start: 3558855

End: 3559949

Strand: Reverse

Name: rci [H]

Synonym: RPB_3125

Alternate gene names: 86750236

Gene position: 3559949-3558855 (Counterclockwise)

Preceding gene: 86750237

Following gene: 86750233

Centisome position: 66.77

GC content: 58.63

Gene sequence:

>1095_bases
ATGTCGACCTTGATCAAGCGCGGAAGAAATTGGACTGCCACGGCGCGCCTGCCGGATACTTTTCAGGGGCCGGCAGCCTC
GAAATCGATCAGCAAAACGTTCCAAAAGAAAGATGCCGCAAAGCTCTGGCTGAGTTCGACAGAGACGGCCATGAAGCTTG
GCAACTGGCGTGATCCTCGGCTCGAACTCAAGGCCTATGGACCGCTGGGGTGGCCTGAGAAGCGCTTTGCGGAGGCGCTG
GATGACTACCGGATCAAGGTGACGCCCGAAAAGAAGGGTGCATCTCAGGAAGTTGCAATGCTTCAGATGTTGGCCCGGGA
GGAATTCGCCCAAAAGCGCATCCGGGATCTGATGGTTTCCGACTTTGCTGACTTCCGCGATGCGCGCGACAAGGCAGGGA
AGTCAGCGTCAACGATCAGGAACAACCTCAACACGATTTCGGCCGTCTACGAATGGCTGATTCACGAAAAGGCCGTCGAC
ATCGCCAATCCGATCGCTTCGCTTCGGAAGCGCCGACGCGGCGTGCCGCAGCCCACGGGGCACCGTGAACGGCGGCTCCT
GGACGGGGAGGAAGAGGCCATTGCGCAGGCAATTGAAGAGCTTCCCGTTGATCCGACGCGTCGGCAATGGCGCGCCCTTT
TCCCACTTCTCCTCGACACCGGAATGCGGCTTGGAGAGGCAATCTCTATCGAATGCGCATGGATTCGTCGGGATTATGGA
TTTGTTTTCATTCCTGACTCAAAGAACGGCAGCGTGCGGCACGTCGCGCTGTCGGACCGCGCTTACGCCGGTTTGCTCGA
GCTGACAGACGGAGAGCCCGCCGACAGCAAGGTCTTCCGGTTCACGCCGTGGGTCGCCAAAGATGCCTGGCGGAATGAGA
TCAGGGTCAGGGCAGGGTGTCAGGACTTGAGAATTCACGATCTCCGGCATGAAGCGTTGTCGAGGATGGCAGCGAGGGGA
GCTGAGCTGAAAACACTGATGCGGCAAAGCGGCCACAAGACGGTGGCAGTGCTCATGAGGTATTTGAATCCGACGCCTGC
TGAGCAGAGGGCGCGGTTGTTTCCGGCCAAACAGAATGTCGAACTGGGACAATGA

Upstream 100 bases:

>100_bases
CCTACGATTCCGGCGCCGCCGCTCGGTTCCGGCGAAGTCGGTGCCGGGGCAGGTTGAAAGGCGCATTCGCTTTATGGTTG
CAGAGCGGACGCCTAACGCC

Downstream 100 bases:

>100_bases
TTGCGGGCGAACAATCATTGGGCGCAAGTCCAAATCACGGGTGATTTCGTGAAAAAGGCGAAGGGACTCGAGTAAGTGCG
CCATTGTAAATCGAAGTGCC

Product: Phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MSTLIKRGRNWTATARLPDTFQGPAASKSISKTFQKKDAAKLWLSSTETAMKLGNWRDPRLELKAYGPLGWPEKRFAEAL
DDYRIKVTPEKKGASQEVAMLQMLAREEFAQKRIRDLMVSDFADFRDARDKAGKSASTIRNNLNTISAVYEWLIHEKAVD
IANPIASLRKRRRGVPQPTGHRERRLLDGEEEAIAQAIEELPVDPTRRQWRALFPLLLDTGMRLGEAISIECAWIRRDYG
FVFIPDSKNGSVRHVALSDRAYAGLLELTDGEPADSKVFRFTPWVAKDAWRNEIRVRAGCQDLRIHDLRHEALSRMAARG
AELKTLMRQSGHKTVAVLMRYLNPTPAEQRARLFPAKQNVELGQ

Sequences:

>Translated_364_residues
MSTLIKRGRNWTATARLPDTFQGPAASKSISKTFQKKDAAKLWLSSTETAMKLGNWRDPRLELKAYGPLGWPEKRFAEAL
DDYRIKVTPEKKGASQEVAMLQMLAREEFAQKRIRDLMVSDFADFRDARDKAGKSASTIRNNLNTISAVYEWLIHEKAVD
IANPIASLRKRRRGVPQPTGHRERRLLDGEEEAIAQAIEELPVDPTRRQWRALFPLLLDTGMRLGEAISIECAWIRRDYG
FVFIPDSKNGSVRHVALSDRAYAGLLELTDGEPADSKVFRFTPWVAKDAWRNEIRVRAGCQDLRIHDLRHEALSRMAARG
AELKTLMRQSGHKTVAVLMRYLNPTPAEQRARLFPAKQNVELGQ
>Mature_363_residues
STLIKRGRNWTATARLPDTFQGPAASKSISKTFQKKDAAKLWLSSTETAMKLGNWRDPRLELKAYGPLGWPEKRFAEALD
DYRIKVTPEKKGASQEVAMLQMLAREEFAQKRIRDLMVSDFADFRDARDKAGKSASTIRNNLNTISAVYEWLIHEKAVDI
ANPIASLRKRRRGVPQPTGHRERRLLDGEEEAIAQAIEELPVDPTRRQWRALFPLLLDTGMRLGEAISIECAWIRRDYGF
VFIPDSKNGSVRHVALSDRAYAGLLELTDGEPADSKVFRFTPWVAKDAWRNEIRVRAGCQDLRIHDLRHEALSRMAARGA
ELKTLMRQSGHKTVAVLMRYLNPTPAEQRARLFPAKQNVELGQ

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41415; Mature: 41284

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLIKRGRNWTATARLPDTFQGPAASKSISKTFQKKDAAKLWLSSTETAMKLGNWRDPR
CCCHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC
LELKAYGPLGWPEKRFAEALDDYRIKVTPEKKGASQEVAMLQMLAREEFAQKRIRDLMVS
EEEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DFADFRDARDKAGKSASTIRNNLNTISAVYEWLIHEKAVDIANPIASLRKRRRGVPQPTG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
HRERRLLDGEEEAIAQAIEELPVDPTRRQWRALFPLLLDTGMRLGEAISIECAWIRRDYG
CHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHCCCEEEEEEEEEEECCC
FVFIPDSKNGSVRHVALSDRAYAGLLELTDGEPADSKVFRFTPWVAKDAWRNEIRVRAGC
EEEEECCCCCCEEEEEECCCHHHCEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHCCC
QDLRIHDLRHEALSRMAARGAELKTLMRQSGHKTVAVLMRYLNPTPAEQRARLFPAKQNV
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCC
ELGQ
CCCC
>Mature Secondary Structure 
STLIKRGRNWTATARLPDTFQGPAASKSISKTFQKKDAAKLWLSSTETAMKLGNWRDPR
CCHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC
LELKAYGPLGWPEKRFAEALDDYRIKVTPEKKGASQEVAMLQMLAREEFAQKRIRDLMVS
EEEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DFADFRDARDKAGKSASTIRNNLNTISAVYEWLIHEKAVDIANPIASLRKRRRGVPQPTG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
HRERRLLDGEEEAIAQAIEELPVDPTRRQWRALFPLLLDTGMRLGEAISIECAWIRRDYG
CHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHCCCEEEEEEEEEEECCC
FVFIPDSKNGSVRHVALSDRAYAGLLELTDGEPADSKVFRFTPWVAKDAWRNEIRVRAGC
EEEEECCCCCCEEEEEECCCHHHCEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHCCC
QDLRIHDLRHEALSRMAARGAELKTLMRQSGHKTVAVLMRYLNPTPAEQRARLFPAKQNV
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCC
ELGQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]