Click here to switch to the map view.

The map label for this gene is ytfA [C]

Identifier: 86750230

GI number: 86750230

Start: 3551695

End: 3552441

Strand: Reverse

Name: ytfA [C]

Synonym: RPB_3117

Alternate gene names: 86750230

Gene position: 3552441-3551695 (Counterclockwise)

Preceding gene: 86750231

Following gene: 86750229

Centisome position: 66.63

GC content: 61.18

Gene sequence:

>747_bases
ATGGCCAATGCCTCGACCTCCGCTCGGACGACCAAGGTCCGTAAATCCGCGGTATCTGCCGCGCCGGCCAAGGCCTCTCG
CGCGCGCGTGAAGCCGGTCAACGGCGCCGGTCATGGCCAGATCGCGACCCGGCAGCGCATTCTCGACGTCGCCACCAAGG
AATTCTCGGCGAAGGGCTATGACGGCGCGCGGGTCGACGACATCATGCGCATCGCGCAGGTCAGCAAGAATCTCATCTAT
CATTATTTCGGCAGCAAAGAAGGGCTGTTCATCGCGGTGCTCGAGGCTGCCTATGAGGGCATGCATGCCTATCAGACGGC
GTGGCCGCTGGACGTCGCGTCGCCGATCGACGGCGTCCGCAAGCTGGTGCAGTCGACCTTCAAATACTGGCACGGTTCAC
CCGAGTTCATCGGTCTTCTGAATTCCGAGAACTTCCACAAGGGGCGTCACCTGCGCAAATCGAAGCTGACCAAGGCCGGC
TATTCGGGGCTGATGGCGAATATCGGCGAGTTGCTGAAGCAGGGCGAGCGCTCCGGCGACTTCCGCCGCAACGTCGATCC
GGTCGAACTCTACATCTCGATCTCGGCGCTGGCCTACCACTTCCTCTCCAATCGCTACACGCTCGCCTATCTGCTGGATC
GCAAATTGTCGACCGAAGAAGACATGAAGGTGCGCACCGCGCATATCGAGGACCTAATTCTCAGCTATCTCCGCTACGGC
GCGCCGAACACCGCGGGTCGGAAGTAA

Upstream 100 bases:

>100_bases
CGAGCCGATCACGAGCCCCGCTTGCATATCGGCTCTGGTTCCGGCTCGATTTCGGCGCTAATGCTACACGCTTCCTACTC
CGCATCTGAAAGTTTGCCGC

Downstream 100 bases:

>100_bases
CAACCGCGTAGGTCGTCGCCAAAACGTCTTGACTAACTGGTCAGTATCTTGAATGTTTCGCGGCGGGTGAGTGGACCGGC
GGTCGTGCCGGTCGATGCCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; Transcriptional Regulator TetR/ArcR Family; Transcriptional Regulator Related Protein; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MANASTSARTTKVRKSAVSAAPAKASRARVKPVNGAGHGQIATRQRILDVATKEFSAKGYDGARVDDIMRIAQVSKNLIY
HYFGSKEGLFIAVLEAAYEGMHAYQTAWPLDVASPIDGVRKLVQSTFKYWHGSPEFIGLLNSENFHKGRHLRKSKLTKAG
YSGLMANIGELLKQGERSGDFRRNVDPVELYISISALAYHFLSNRYTLAYLLDRKLSTEEDMKVRTAHIEDLILSYLRYG
APNTAGRK

Sequences:

>Translated_248_residues
MANASTSARTTKVRKSAVSAAPAKASRARVKPVNGAGHGQIATRQRILDVATKEFSAKGYDGARVDDIMRIAQVSKNLIY
HYFGSKEGLFIAVLEAAYEGMHAYQTAWPLDVASPIDGVRKLVQSTFKYWHGSPEFIGLLNSENFHKGRHLRKSKLTKAG
YSGLMANIGELLKQGERSGDFRRNVDPVELYISISALAYHFLSNRYTLAYLLDRKLSTEEDMKVRTAHIEDLILSYLRYG
APNTAGRK
>Mature_247_residues
ANASTSARTTKVRKSAVSAAPAKASRARVKPVNGAGHGQIATRQRILDVATKEFSAKGYDGARVDDIMRIAQVSKNLIYH
YFGSKEGLFIAVLEAAYEGMHAYQTAWPLDVASPIDGVRKLVQSTFKYWHGSPEFIGLLNSENFHKGRHLRKSKLTKAGY
SGLMANIGELLKQGERSGDFRRNVDPVELYISISALAYHFLSNRYTLAYLLDRKLSTEEDMKVRTAHIEDLILSYLRYGA
PNTAGRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27570; Mature: 27439

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANASTSARTTKVRKSAVSAAPAKASRARVKPVNGAGHGQIATRQRILDVATKEFSAKGY
CCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
DGARVDDIMRIAQVSKNLIYHYFGSKEGLFIAVLEAAYEGMHAYQTAWPLDVASPIDGVR
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
KLVQSTFKYWHGSPEFIGLLNSENFHKGRHLRKSKLTKAGYSGLMANIGELLKQGERSGD
HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FRRNVDPVELYISISALAYHFLSNRYTLAYLLDRKLSTEEDMKVRTAHIEDLILSYLRYG
CCCCCCHHHEEEHHHHHHHHHHHCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
APNTAGRK
CCCCCCCC
>Mature Secondary Structure 
ANASTSARTTKVRKSAVSAAPAKASRARVKPVNGAGHGQIATRQRILDVATKEFSAKGY
CCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
DGARVDDIMRIAQVSKNLIYHYFGSKEGLFIAVLEAAYEGMHAYQTAWPLDVASPIDGVR
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
KLVQSTFKYWHGSPEFIGLLNSENFHKGRHLRKSKLTKAGYSGLMANIGELLKQGERSGD
HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FRRNVDPVELYISISALAYHFLSNRYTLAYLLDRKLSTEEDMKVRTAHIEDLILSYLRYG
CCCCCCHHHEEEHHHHHHHHHHHCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
APNTAGRK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA