Click here to switch to the map view.

The map label for this gene is ybdL [C]

Identifier: 86750129

GI number: 86750129

Start: 3435156

End: 3436343

Strand: Reverse

Name: ybdL [C]

Synonym: RPB_3012

Alternate gene names: 86750129

Gene position: 3436343-3435156 (Counterclockwise)

Preceding gene: 86750134

Following gene: 86750128

Centisome position: 64.45

GC content: 67.09

Gene sequence:

>1188_bases
ATGCGCGATGCGACCACGACAGCCGCGGCGATTCGATCGTTGACAGCGTCCGCCCGGAGCGATGTGCCGCCCTTCATGGT
GATGGACGTGATGGCGGCCGCGGAACGGATCGAGGCCGCCGGCGGTCACGTCATCCACATGGAGGTCGGTCAGCCGTGGG
CGTCGGCACCACGCACGGCGCTCGCCGCCGCGCATCAGGCGCTGGAGCAGGGCCGCATCGACTACACGTCGGCGCTCGGC
ATTCCCTCGCTGCGCGCGCGGATCGCGCGGCACTATCGCGACGTCTACGGCGCCGACGTCGATCCGGACCGCATCGTCGT
CACCACCGGGTCCTCCGGCGCCTTCATCCTGTCGTTCCTGGCGCTGTTCGAACCCGGCGATCGGGTCGCGGTGACGGTGC
CCGGCTATCCGCCGTATCGCCACATCCTCACTGCGCTCGGCTGCGAGCCGGTGCTGATCGAGACCCACAGCGAGACGCGA
CATGCGTTGACCGGCGAGGCGCTGCTCGCCGCCCATCGCAAGGCGCCGCTGAAGGGCGTGCTGGTCGCCAGCCCGGCGAA
TCCGACCGGCACGATGATGACGCGTGCCGCGCTGACCGAACTGATCGCCGTCGCCGAGAGCGAGGGCATCCGGTTCATTT
CCGACGAAATCTATCACGGCCTCGACTACGCATTCCCGGCGGTGACCGCGGCCGAGCTGTCGCCGAATGCCGTCGTGATC
AATTCGTTCTCGAAGTACTTCTGCATGACCGGCTGGCGGGTCGGCTGGATGGTGCTGCCCGAGCCGCTGGTGCGGCCGGT
CGAACGTCTGCAGCAGAATCTGGCGATCTCGGTGCCGACGCTGTCGCAGATCGCGGCCGAAGCGGCGTTCGAGGGCGGTG
CCGAGATGGAGGCGGTGAAACGCGGCTACGAGGAGAACCGCAAAATCCTGATCACCGGTTTGCCGCAAGCGGGCCTGACG
GATTTCCTGCCGGCCGACGGCGCGTTCTATCTCTACGCGGACGTCTCGAAATTCACCTCCGACAGTTTCGTCTTCACCAA
GCGGATGCTGGCGGAAGCGCATGTCGCAGCCACCCCCGGGACCGATTTCGATCCGGTGCGTGGCATGAATTTCGTCCGTT
TGTCCTATGCCCGCTCGGCCGACGATATGCGCGAAGCCGTGCGCCGGATTGCGGCCTGGCTCGCGTAA

Upstream 100 bases:

>100_bases
GTTCGAATAACGGATATCCCCTGATCAGCCCAGCAATACGGCAGCAGCGCGACGCCGCCGGGTTTCGCCGAACCGAACCG
CGCGGGAGTAGCAGATTTCA

Downstream 100 bases:

>100_bases
ATCCGGCAATGTGACGGTGGAATGCAGATTCGAGGGTTGCTCTCAGCGGCATTTCGTCGCTATAGGCACCCGCGACTAAT
TCCTTCCTGGAGAAATCCCT

Product: aminotransferase, class I and II

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MRDATTTAAAIRSLTASARSDVPPFMVMDVMAAAERIEAAGGHVIHMEVGQPWASAPRTALAAAHQALEQGRIDYTSALG
IPSLRARIARHYRDVYGADVDPDRIVVTTGSSGAFILSFLALFEPGDRVAVTVPGYPPYRHILTALGCEPVLIETHSETR
HALTGEALLAAHRKAPLKGVLVASPANPTGTMMTRAALTELIAVAESEGIRFISDEIYHGLDYAFPAVTAAELSPNAVVI
NSFSKYFCMTGWRVGWMVLPEPLVRPVERLQQNLAISVPTLSQIAAEAAFEGGAEMEAVKRGYEENRKILITGLPQAGLT
DFLPADGAFYLYADVSKFTSDSFVFTKRMLAEAHVAATPGTDFDPVRGMNFVRLSYARSADDMREAVRRIAAWLA

Sequences:

>Translated_395_residues
MRDATTTAAAIRSLTASARSDVPPFMVMDVMAAAERIEAAGGHVIHMEVGQPWASAPRTALAAAHQALEQGRIDYTSALG
IPSLRARIARHYRDVYGADVDPDRIVVTTGSSGAFILSFLALFEPGDRVAVTVPGYPPYRHILTALGCEPVLIETHSETR
HALTGEALLAAHRKAPLKGVLVASPANPTGTMMTRAALTELIAVAESEGIRFISDEIYHGLDYAFPAVTAAELSPNAVVI
NSFSKYFCMTGWRVGWMVLPEPLVRPVERLQQNLAISVPTLSQIAAEAAFEGGAEMEAVKRGYEENRKILITGLPQAGLT
DFLPADGAFYLYADVSKFTSDSFVFTKRMLAEAHVAATPGTDFDPVRGMNFVRLSYARSADDMREAVRRIAAWLA
>Mature_395_residues
MRDATTTAAAIRSLTASARSDVPPFMVMDVMAAAERIEAAGGHVIHMEVGQPWASAPRTALAAAHQALEQGRIDYTSALG
IPSLRARIARHYRDVYGADVDPDRIVVTTGSSGAFILSFLALFEPGDRVAVTVPGYPPYRHILTALGCEPVLIETHSETR
HALTGEALLAAHRKAPLKGVLVASPANPTGTMMTRAALTELIAVAESEGIRFISDEIYHGLDYAFPAVTAAELSPNAVVI
NSFSKYFCMTGWRVGWMVLPEPLVRPVERLQQNLAISVPTLSQIAAEAAFEGGAEMEAVKRGYEENRKILITGLPQAGLT
DFLPADGAFYLYADVSKFTSDSFVFTKRMLAEAHVAATPGTDFDPVRGMNFVRLSYARSADDMREAVRRIAAWLA

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=395, Percent_Identity=25.8227848101266, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI56713256, Length=395, Percent_Identity=25.8227848101266, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI95147551, Length=408, Percent_Identity=23.7745098039216, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI169881279, Length=408, Percent_Identity=23.7745098039216, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI4507369, Length=354, Percent_Identity=25.1412429378531, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI169881281, Length=253, Percent_Identity=22.5296442687747, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI215599424, Length=366, Percent_Identity=23.224043715847, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI19263340, Length=366, Percent_Identity=23.224043715847, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1786816, Length=368, Percent_Identity=27.1739130434783, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788722, Length=373, Percent_Identity=27.8820375335121, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788627, Length=393, Percent_Identity=25.4452926208651, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790797, Length=340, Percent_Identity=26.1764705882353, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787710, Length=212, Percent_Identity=30.188679245283, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71994476, Length=371, Percent_Identity=25.6064690026954, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71994472, Length=371, Percent_Identity=25.6064690026954, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17567369, Length=358, Percent_Identity=25.4189944134078, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17567663, Length=383, Percent_Identity=25.5874673629243, Blast_Score=88, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6322401, Length=426, Percent_Identity=22.5352112676056, Blast_Score=96, Evalue=7e-21,
Organism=Drosophila melanogaster, GI28573069, Length=354, Percent_Identity=21.1864406779661, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24646114, Length=354, Percent_Identity=21.1864406779661, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI28573067, Length=354, Percent_Identity=21.1864406779661, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI28573065, Length=354, Percent_Identity=21.1864406779661, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI18859735, Length=388, Percent_Identity=25.5154639175258, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 42647; Mature: 42647

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDATTTAAAIRSLTASARSDVPPFMVMDVMAAAERIEAAGGHVIHMEVGQPWASAPRTA
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHH
LAAAHQALEQGRIDYTSALGIPSLRARIARHYRDVYGADVDPDRIVVTTGSSGAFILSFL
HHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH
ALFEPGDRVAVTVPGYPPYRHILTALGCEPVLIETHSETRHALTGEALLAAHRKAPLKGV
HHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEE
LVASPANPTGTMMTRAALTELIAVAESEGIRFISDEIYHGLDYAFPAVTAAELSPNAVVI
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHCCHHHHHCCCHHCCCCCEEEE
NSFSKYFCMTGWRVGWMVLPEPLVRPVERLQQNLAISVPTLSQIAAEAAFEGGAEMEAVK
ECCHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCEECCCHHHHHHHHHHHCCCCHHHHHH
RGYEENRKILITGLPQAGLTDFLPADGAFYLYADVSKFTSDSFVFTKRMLAEAHVAATPG
CCHHCCCEEEEEECCCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHEECCC
TDFDPVRGMNFVRLSYARSADDMREAVRRIAAWLA
CCCCCCCCCCEEEEEHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRDATTTAAAIRSLTASARSDVPPFMVMDVMAAAERIEAAGGHVIHMEVGQPWASAPRTA
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHH
LAAAHQALEQGRIDYTSALGIPSLRARIARHYRDVYGADVDPDRIVVTTGSSGAFILSFL
HHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH
ALFEPGDRVAVTVPGYPPYRHILTALGCEPVLIETHSETRHALTGEALLAAHRKAPLKGV
HHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEE
LVASPANPTGTMMTRAALTELIAVAESEGIRFISDEIYHGLDYAFPAVTAAELSPNAVVI
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHCCHHHHHCCCHHCCCCCEEEE
NSFSKYFCMTGWRVGWMVLPEPLVRPVERLQQNLAISVPTLSQIAAEAAFEGGAEMEAVK
ECCHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCEECCCHHHHHHHHHHHCCCCHHHHHH
RGYEENRKILITGLPQAGLTDFLPADGAFYLYADVSKFTSDSFVFTKRMLAEAHVAATPG
CCHHCCCEEEEEECCCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHEECCC
TDFDPVRGMNFVRLSYARSADDMREAVRRIAAWLA
CCCCCCCCCCEEEEEHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]