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The map label for this gene is yfdE [H]

Identifier: 86749891

GI number: 86749891

Start: 3161515

End: 3162660

Strand: Reverse

Name: yfdE [H]

Synonym: RPB_2774

Alternate gene names: 86749891

Gene position: 3162660-3161515 (Counterclockwise)

Preceding gene: 86749893

Following gene: 86749890

Centisome position: 59.32

GC content: 64.66

Gene sequence:

>1146_bases
ATGGGTGGACCGCTCGCCGGCCTGAAGGTGATCGAGATCGCGCAGGCGATCGCAGGGCCGATGGCCGGCATGATCCTCGG
TGACATGGGGGCCGACGTGATCAAGATCGAGAAGCATGACGGCGGCGACGACGCCCGGCACTGGGGCCCGCCCTTCATCG
ACGGCGATTCGCTGCTGTTTCACACCTTCAACCGCAACAAGCGCTCAGTGACGCTCGACATCAAGAATCCGGACGACGTC
GCCAAGTTGAAGGATCTGGTGAAGGATGCCGACATCCTGATCCAGAATCTGCGCTCGGGCGTGGTCGCGGATTGCGGCAT
CGGGCCGGACGTGATGTGTGCGATCAATCCGCGGCTGATCTATTGCTCGGTGTGGGCGTTCGGCAAGACCGGACCATTGA
GCCGCGAGCCGGGCTTCGATCCGTTGCTCCAGGCCTATGGCGGAGTGATGTCGCTGACCGGATCGGAGGGTGATCCCCCA
ACGTTCTGTGCCCCCGCGATCAACGATCGGGCCACCGCGCAATGGTGCGTCATCGGCGCGCTCGCGGCACTGCAGCAGCG
CCATGTCACCGGCAAGGGCGGCGTGGTCGACACCTCGCTGTTCGATACCGCGGTTGCTTGGGTCGATATCCAGCTCAACA
ATTTCCTGCTCGACGGCGAGGCGCCGACGCGTCACGGCACAGCGAGCGCGACGCTGGCGCCGTACCAGGTGTTCGAGACC
GCCGACCGGCCGATCGTCATTGCCGCCGGCAATGACCGGCTGTTCGCGAAATGTGCGGAAGTGCTCGGCCATCCGGAATG
GATCACCGATGAACGCTTCGCCCGGGTTCAAGATCGCAGTGCGCATCGGGTCGAACTGATTGCGCTGATGCAGCCGGTGC
TGACGACACGCAGCGCGGCCGAATGGCTGAGTGCGCTGAAACGCGCCGGCGTGCCGGTGAGCCCGGTCAACGATATTCCG
GAGCTCGCCGCCACCGAACAGCTCGCGTCCGCCGACATGCTGCGGACAATGCCTGGAAGCAGACTCAAGGTGGCTGGACT
GCCGATCATGTTCGACGGCGAGCGTCCACACCCCGTGCAGAACACGCCGAAGCTCGGCGCTCACAACGCCGAGGTTTTGG
TCGATCGCGCCGACGCTGCAGAGTAG

Upstream 100 bases:

>100_bases
CATGGCAGGGTCCCACTGTTGAGATGGACTTGCAATTTGCGTCTCGGCACGGAAACAGTGCCGCGCCAACCCCGGCATGT
CTATCGAAACGGAGCAGCAG

Downstream 100 bases:

>100_bases
ATCAAAATTTCGTCAGCACGGCGCGCGCACGGTGTCGTGTGATGCCGACGGCACCGCTGGCGCGCTAGGGTCATCTCGAC
CTGACCGCTCCTTCCCCGAA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MGGPLAGLKVIEIAQAIAGPMAGMILGDMGADVIKIEKHDGGDDARHWGPPFIDGDSLLFHTFNRNKRSVTLDIKNPDDV
AKLKDLVKDADILIQNLRSGVVADCGIGPDVMCAINPRLIYCSVWAFGKTGPLSREPGFDPLLQAYGGVMSLTGSEGDPP
TFCAPAINDRATAQWCVIGALAALQQRHVTGKGGVVDTSLFDTAVAWVDIQLNNFLLDGEAPTRHGTASATLAPYQVFET
ADRPIVIAAGNDRLFAKCAEVLGHPEWITDERFARVQDRSAHRVELIALMQPVLTTRSAAEWLSALKRAGVPVSPVNDIP
ELAATEQLASADMLRTMPGSRLKVAGLPIMFDGERPHPVQNTPKLGAHNAEVLVDRADAAE

Sequences:

>Translated_381_residues
MGGPLAGLKVIEIAQAIAGPMAGMILGDMGADVIKIEKHDGGDDARHWGPPFIDGDSLLFHTFNRNKRSVTLDIKNPDDV
AKLKDLVKDADILIQNLRSGVVADCGIGPDVMCAINPRLIYCSVWAFGKTGPLSREPGFDPLLQAYGGVMSLTGSEGDPP
TFCAPAINDRATAQWCVIGALAALQQRHVTGKGGVVDTSLFDTAVAWVDIQLNNFLLDGEAPTRHGTASATLAPYQVFET
ADRPIVIAAGNDRLFAKCAEVLGHPEWITDERFARVQDRSAHRVELIALMQPVLTTRSAAEWLSALKRAGVPVSPVNDIP
ELAATEQLASADMLRTMPGSRLKVAGLPIMFDGERPHPVQNTPKLGAHNAEVLVDRADAAE
>Mature_380_residues
GGPLAGLKVIEIAQAIAGPMAGMILGDMGADVIKIEKHDGGDDARHWGPPFIDGDSLLFHTFNRNKRSVTLDIKNPDDVA
KLKDLVKDADILIQNLRSGVVADCGIGPDVMCAINPRLIYCSVWAFGKTGPLSREPGFDPLLQAYGGVMSLTGSEGDPPT
FCAPAINDRATAQWCVIGALAALQQRHVTGKGGVVDTSLFDTAVAWVDIQLNNFLLDGEAPTRHGTASATLAPYQVFETA
DRPIVIAAGNDRLFAKCAEVLGHPEWITDERFARVQDRSAHRVELIALMQPVLTTRSAAEWLSALKRAGVPVSPVNDIPE
LAATEQLASADMLRTMPGSRLKVAGLPIMFDGERPHPVQNTPKLGAHNAEVLVDRADAAE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=373, Percent_Identity=33.2439678284182, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI300863124, Length=326, Percent_Identity=35.8895705521472, Blast_Score=240, Evalue=1e-63,
Organism=Homo sapiens, GI13376042, Length=326, Percent_Identity=33.1288343558282, Blast_Score=207, Evalue=1e-53,
Organism=Homo sapiens, GI300863126, Length=373, Percent_Identity=29.4906166219839, Blast_Score=202, Evalue=6e-52,
Organism=Homo sapiens, GI42794625, Length=381, Percent_Identity=24.6719160104987, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI266456254, Length=381, Percent_Identity=24.6719160104987, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI266458397, Length=244, Percent_Identity=30.327868852459, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI266458393, Length=244, Percent_Identity=30.327868852459, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI266458395, Length=136, Percent_Identity=33.0882352941176, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI42822893, Length=136, Percent_Identity=33.0882352941176, Blast_Score=86, Evalue=6e-17,
Organism=Escherichia coli, GI87082093, Length=349, Percent_Identity=34.9570200573066, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1788717, Length=399, Percent_Identity=29.3233082706767, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI1786222, Length=393, Percent_Identity=24.6819338422392, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=328, Percent_Identity=26.5243902439024, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=333, Percent_Identity=25.2252252252252, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24648431, Length=375, Percent_Identity=33.6, Blast_Score=235, Evalue=5e-62,
Organism=Drosophila melanogaster, GI24585488, Length=324, Percent_Identity=29.320987654321, Blast_Score=126, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40713; Mature: 40582

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGPLAGLKVIEIAQAIAGPMAGMILGDMGADVIKIEKHDGGDDARHWGPPFIDGDSLLF
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE
HTFNRNKRSVTLDIKNPDDVAKLKDLVKDADILIQNLRSGVVADCGIGPDVMCAINPRLI
EEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCEEE
YCSVWAFGKTGPLSREPGFDPLLQAYGGVMSLTGSEGDPPTFCAPAINDRATAQWCVIGA
EEEEEECCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCEECCCCCCCCHHHHHHHHH
LAALQQRHVTGKGGVVDTSLFDTAVAWVDIQLNNFLLDGEAPTRHGTASATLAPYQVFET
HHHHHHHCCCCCCCEEEHHHHHHEEEEEEEEECCEEECCCCCCCCCCCCCEECHHHHHHC
ADRPIVIAAGNDRLFAKCAEVLGHPEWITDERFARVQDRSAHRVELIALMQPVLTTRSAA
CCCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EWLSALKRAGVPVSPVNDIPELAATEQLASADMLRTMPGSRLKVAGLPIMFDGERPHPVQ
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEECCCCCCCCC
NTPKLGAHNAEVLVDRADAAE
CCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure 
GGPLAGLKVIEIAQAIAGPMAGMILGDMGADVIKIEKHDGGDDARHWGPPFIDGDSLLF
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE
HTFNRNKRSVTLDIKNPDDVAKLKDLVKDADILIQNLRSGVVADCGIGPDVMCAINPRLI
EEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCEEE
YCSVWAFGKTGPLSREPGFDPLLQAYGGVMSLTGSEGDPPTFCAPAINDRATAQWCVIGA
EEEEEECCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCEECCCCCCCCHHHHHHHHH
LAALQQRHVTGKGGVVDTSLFDTAVAWVDIQLNNFLLDGEAPTRHGTASATLAPYQVFET
HHHHHHHCCCCCCCEEEHHHHHHEEEEEEEEECCEEECCCCCCCCCCCCCEECHHHHHHC
ADRPIVIAAGNDRLFAKCAEVLGHPEWITDERFARVQDRSAHRVELIALMQPVLTTRSAA
CCCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EWLSALKRAGVPVSPVNDIPELAATEQLASADMLRTMPGSRLKVAGLPIMFDGERPHPVQ
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEECCCCCCCCC
NTPKLGAHNAEVLVDRADAAE
CCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]