| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is fct [H]
Identifier: 86749771
GI number: 86749771
Start: 3034615
End: 3036888
Strand: Direct
Name: fct [H]
Synonym: RPB_2654
Alternate gene names: 86749771
Gene position: 3034615-3036888 (Clockwise)
Preceding gene: 86749769
Following gene: 86749772
Centisome position: 56.92
GC content: 65.13
Gene sequence:
>2274_bases ATGAAATTTCGAACAAGAAAAGCGACGAAGCAGACCCTTCTGCTTTGCACGGTCAGCCTGCTCGCACTGGCGGCCGATTT TCCGCACGGCGCGCGGGCGCAATCGAATCTGCCGGCGGTCACCGTCGACGCGCCGCAGCCGCAGCAGCGCGCGCGCAGCG CGCCGACGACATCGTCCCGCAGCACGGCGCGCGCGACGCGCCGCGCCAACCGCGCCGCGACGACGCCGCCCCAGGCCGCG CCGATGCCGTCGGTCCATGAGCGCATCTATGCCGGCACCAACAGCTATGTCGCCGGACAATCGAGCGCGGCCTCGAAGAC CGACACGCCGCTGATCGACACGCCGCGTTCGGTCAGCGTGATCGATCGCAAGGAACTCGACGATCGAGGCGTCACCAGCA TCCCGGAAGCGGTGCGCTATTCGGCGGGCGTCACCACCGGCGGCTACGGCTACGATCCGCGCTTCGACCAGATCTACATC CGCGGCTTCTCGACCACGACGCTCGGCGATTTCCGTGACGGGCTGAAGCAGTTTCCGGCCGGCTTCTCGACCTTCCGCAC CGAGCCGTATCAGCTCGACCGCGTCGAGATCATCAAGGGGCCGGCCGCGGTGCTGTACGGCCAATCGGTGCCGGGCGGAC TGGTCGATCGGCGGTCGAAATTTCCGGTGGAAAACCAGGTCAACGAGATCGCGATTCAGGCCGGCACGTTCGATCGCTTC CAGACCGCCTTCGACATCGGCGGCGCCGCCAGTCCCGACAAGTCGCTGCTGTATCGGCTGGTCGGTGTCGCCCGCAGCGG CGACACCAATTTCGACGTCGCCGATCAAAGGCTGATGCTGGCGCCGTCGCTGACCTGGCGACCGACCGCCGACACCACGC TGACGACCTACGCGCTGGTGCAGAAGGACGAGACCGATTCCAGCGTCGCCGCGCTCAACCGCAACGGCAAATTGCTGACC GTCAACGGCGAATATCTGCGCGCCAGCGATCCCAAATACGACTATCTGAAGCTGCAGCAGGTGCAGACCGGCTACAAGCT CGAGCACCGCTTCGACGACGTCTTCACCTTCCGGCAGCACACGCGGTTCTCCAATCTGAAGACGGACTCGCGCTATCTCA GCGGAAGTTTCGCCAATACCACGACGTCGATCTACAATCGCGCCGCCTATGCGGTGGGCGACGAGCAGACCAGTTGGCAG ACCGACAACAATCTGCAGGCGGATTTCGCCACCGGCCCGGTGGCGCACCGGGTGCTGGCCGGCGTGAACTACGACCACAA TGTCTGGGACTTCCAGTTCGGCGGCAGCGGCGTGCAGTCGGCCTACGCGCTCGACATCTCCAATCCAACCTACGGGATCG CCGGCGCGACGCCGGCCTACACCTCCGGTTCGCGCTCGACCCAGGAGCAGGTGGGCGTCTATCTGCAGGATCAGATGCGG CTCGGCGGCTGGCACCTGTCGCTGGCCGGGCGTCACGACTGGGCCGATCAGACCCGGATCAACACCTACACCAACGCCGT CACCGGTCAGCGCAACGATTCCGCCTTCTCCTACAGCGCCGGGTTGCTGTACCATTTCGACAACGGCGTCGCGCCCTATG TCAGCTACGCGACCTCATTCCAGCCGACGACCTCGATGGCGATCGACGGCAGCGTGCTGGCGCCGTCCGAAGGCGAGCAG TTCGAGGCCGGCGTGAAATATCAGCCGCGTGCCGACGTGTTGCTGACCGCCTCGGTCTACGACCTGACGGAGAAGAACGC CGCCAAGCTCGCCGGCTACGTCAACGGCGTCGCCTATTACGCCTCGGTCGGCGAGATTCACGTCCAGGGCGTCGAGCTCG AGGCGCGGGCGCGACTGACGCCCGAATTGGAGACGGTGACGGCCTATACGTTCTCCGATGCCGAGATCACCAAGACGACC GTCGCCAGCGAGCTGAACAAGGTTCCGGCGGTGACGCCGAAACACACCGCGTCGAGCTGGCTCAACTATTCGTTCCTGAA CGGCCCGCTCGACGGACTAGGGCTGGGTGTCGGCGTCCGCTACATCGATGCCACCTGGACGTCGAATGCCAACACCGATC GCAACAATGGCTACACGCTGGTCGATCTGGCGATGCGTTACGATCTCGGCAAGCTGGCGCGGCAGTTCGCCGGGTTCCAA GCCTCGGTCAACGCCAACAACATCGCCGACGAGCAGATCGCGGTGTGCAACGCCGGCTATTGCTATCTCAGCCAGGGGCG CACCGTGATCGGCACGCTGCGCTATCGCTGGTAG
Upstream 100 bases:
>100_bases TTCTCTAGACAAATTCTACCGCGGCCGGTCGTGCGTGGAATTACTTGTCGGGTTACACGACCGATGACGCCGGCACCGCC GGCCGCATCGGGGCGTGAAT
Downstream 100 bases:
>100_bases CGGCGTTCCATCGCCGCTCGCGCGGCGCCGGACACGGCAGGGACCCGGGGCGGACGACCGGGTCCTTGCGCATGGTCCTG GATATTCTCGGCGAGAGCGC
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 757; Mature: 757
Protein sequence:
>757_residues MKFRTRKATKQTLLLCTVSLLALAADFPHGARAQSNLPAVTVDAPQPQQRARSAPTTSSRSTARATRRANRAATTPPQAA PMPSVHERIYAGTNSYVAGQSSAASKTDTPLIDTPRSVSVIDRKELDDRGVTSIPEAVRYSAGVTTGGYGYDPRFDQIYI RGFSTTTLGDFRDGLKQFPAGFSTFRTEPYQLDRVEIIKGPAAVLYGQSVPGGLVDRRSKFPVENQVNEIAIQAGTFDRF QTAFDIGGAASPDKSLLYRLVGVARSGDTNFDVADQRLMLAPSLTWRPTADTTLTTYALVQKDETDSSVAALNRNGKLLT VNGEYLRASDPKYDYLKLQQVQTGYKLEHRFDDVFTFRQHTRFSNLKTDSRYLSGSFANTTTSIYNRAAYAVGDEQTSWQ TDNNLQADFATGPVAHRVLAGVNYDHNVWDFQFGGSGVQSAYALDISNPTYGIAGATPAYTSGSRSTQEQVGVYLQDQMR LGGWHLSLAGRHDWADQTRINTYTNAVTGQRNDSAFSYSAGLLYHFDNGVAPYVSYATSFQPTTSMAIDGSVLAPSEGEQ FEAGVKYQPRADVLLTASVYDLTEKNAAKLAGYVNGVAYYASVGEIHVQGVELEARARLTPELETVTAYTFSDAEITKTT VASELNKVPAVTPKHTASSWLNYSFLNGPLDGLGLGVGVRYIDATWTSNANTDRNNGYTLVDLAMRYDLGKLARQFAGFQ ASVNANNIADEQIAVCNAGYCYLSQGRTVIGTLRYRW
Sequences:
>Translated_757_residues MKFRTRKATKQTLLLCTVSLLALAADFPHGARAQSNLPAVTVDAPQPQQRARSAPTTSSRSTARATRRANRAATTPPQAA PMPSVHERIYAGTNSYVAGQSSAASKTDTPLIDTPRSVSVIDRKELDDRGVTSIPEAVRYSAGVTTGGYGYDPRFDQIYI RGFSTTTLGDFRDGLKQFPAGFSTFRTEPYQLDRVEIIKGPAAVLYGQSVPGGLVDRRSKFPVENQVNEIAIQAGTFDRF QTAFDIGGAASPDKSLLYRLVGVARSGDTNFDVADQRLMLAPSLTWRPTADTTLTTYALVQKDETDSSVAALNRNGKLLT VNGEYLRASDPKYDYLKLQQVQTGYKLEHRFDDVFTFRQHTRFSNLKTDSRYLSGSFANTTTSIYNRAAYAVGDEQTSWQ TDNNLQADFATGPVAHRVLAGVNYDHNVWDFQFGGSGVQSAYALDISNPTYGIAGATPAYTSGSRSTQEQVGVYLQDQMR LGGWHLSLAGRHDWADQTRINTYTNAVTGQRNDSAFSYSAGLLYHFDNGVAPYVSYATSFQPTTSMAIDGSVLAPSEGEQ FEAGVKYQPRADVLLTASVYDLTEKNAAKLAGYVNGVAYYASVGEIHVQGVELEARARLTPELETVTAYTFSDAEITKTT VASELNKVPAVTPKHTASSWLNYSFLNGPLDGLGLGVGVRYIDATWTSNANTDRNNGYTLVDLAMRYDLGKLARQFAGFQ ASVNANNIADEQIAVCNAGYCYLSQGRTVIGTLRYRW >Mature_757_residues MKFRTRKATKQTLLLCTVSLLALAADFPHGARAQSNLPAVTVDAPQPQQRARSAPTTSSRSTARATRRANRAATTPPQAA PMPSVHERIYAGTNSYVAGQSSAASKTDTPLIDTPRSVSVIDRKELDDRGVTSIPEAVRYSAGVTTGGYGYDPRFDQIYI RGFSTTTLGDFRDGLKQFPAGFSTFRTEPYQLDRVEIIKGPAAVLYGQSVPGGLVDRRSKFPVENQVNEIAIQAGTFDRF QTAFDIGGAASPDKSLLYRLVGVARSGDTNFDVADQRLMLAPSLTWRPTADTTLTTYALVQKDETDSSVAALNRNGKLLT VNGEYLRASDPKYDYLKLQQVQTGYKLEHRFDDVFTFRQHTRFSNLKTDSRYLSGSFANTTTSIYNRAAYAVGDEQTSWQ TDNNLQADFATGPVAHRVLAGVNYDHNVWDFQFGGSGVQSAYALDISNPTYGIAGATPAYTSGSRSTQEQVGVYLQDQMR LGGWHLSLAGRHDWADQTRINTYTNAVTGQRNDSAFSYSAGLLYHFDNGVAPYVSYATSFQPTTSMAIDGSVLAPSEGEQ FEAGVKYQPRADVLLTASVYDLTEKNAAKLAGYVNGVAYYASVGEIHVQGVELEARARLTPELETVTAYTFSDAEITKTT VASELNKVPAVTPKHTASSWLNYSFLNGPLDGLGLGVGVRYIDATWTSNANTDRNNGYTLVDLAMRYDLGKLARQFAGFQ ASVNANNIADEQIAVCNAGYCYLSQGRTVIGTLRYRW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=716, Percent_Identity=34.9162011173184, Blast_Score=375, Evalue=1e-105, Organism=Escherichia coli, GI1787024, Length=665, Percent_Identity=24.5112781954887, Blast_Score=109, Evalue=5e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 82596; Mature: 82596
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFRTRKATKQTLLLCTVSLLALAADFPHGARAQSNLPAVTVDAPQPQQRARSAPTTSSR CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHCCCCCCCCC STARATRRANRAATTPPQAAPMPSVHERIYAGTNSYVAGQSSAASKTDTPLIDTPRSVSV HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCEEE IDRKELDDRGVTSIPEAVRYSAGVTTGGYGYDPRFDQIYIRGFSTTTLGDFRDGLKQFPA EEHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCC GFSTFRTEPYQLDRVEIIKGPAAVLYGQSVPGGLVDRRSKFPVENQVNEIAIQAGTFDRF CHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCHHCCCCCCCHHHCCCEEEEECCCCHHH QTAFDIGGAASPDKSLLYRLVGVARSGDTNFDVADQRLMLAPSLTWRPTADTTLTTYALV HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEE QKDETDSSVAALNRNGKLLTVNGEYLRASDPKYDYLKLQQVQTGYKLEHRFDDVFTFRQH ECCCCCCCCEEECCCCCEEEECCCEEECCCCCCCCEEEEHHHCCCCHHHHHHHHHHHHHH TRFSNLKTDSRYLSGSFANTTTSIYNRAAYAVGDEQTSWQTDNNLQADFATGPVAHRVLA HHHCCCCCCCCEECCCCCCHHHHHHHCEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHH GVNYDHNVWDFQFGGSGVQSAYALDISNPTYGIAGATPAYTSGSRSTQEQVGVYLQDQMR CCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCEEEEECEE LGGWHLSLAGRHDWADQTRINTYTNAVTGQRNDSAFSYSAGLLYHFDNGVAPYVSYATSF CCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCEEEEEECCCCCHHHHHHCCC QPTTSMAIDGSVLAPSEGEQFEAGVKYQPRADVLLTASVYDLTEKNAAKLAGYVNGVAYY CCCCCEEECCCEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCEEEE ASVGEIHVQGVELEARARLTPELETVTAYTFSDAEITKTTVASELNKVPAVTPKHTASSW EEECEEEEEEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHH LNYSFLNGPLDGLGLGVGVRYIDATWTSNANTDRNNGYTLVDLAMRYDLGKLARQFAGFQ CEEHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEHHHCHHHHHHHHCCCE ASVNANNIADEQIAVCNAGYCYLSQGRTVIGTLRYRW EECCCCCCCCCEEEEECCCEEEEECCCEEEEEEEECC >Mature Secondary Structure MKFRTRKATKQTLLLCTVSLLALAADFPHGARAQSNLPAVTVDAPQPQQRARSAPTTSSR CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHCCCCCCCCC STARATRRANRAATTPPQAAPMPSVHERIYAGTNSYVAGQSSAASKTDTPLIDTPRSVSV HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCEEE IDRKELDDRGVTSIPEAVRYSAGVTTGGYGYDPRFDQIYIRGFSTTTLGDFRDGLKQFPA EEHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCC GFSTFRTEPYQLDRVEIIKGPAAVLYGQSVPGGLVDRRSKFPVENQVNEIAIQAGTFDRF CHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCHHCCCCCCCHHHCCCEEEEECCCCHHH QTAFDIGGAASPDKSLLYRLVGVARSGDTNFDVADQRLMLAPSLTWRPTADTTLTTYALV HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEE QKDETDSSVAALNRNGKLLTVNGEYLRASDPKYDYLKLQQVQTGYKLEHRFDDVFTFRQH ECCCCCCCCEEECCCCCEEEECCCEEECCCCCCCCEEEEHHHCCCCHHHHHHHHHHHHHH TRFSNLKTDSRYLSGSFANTTTSIYNRAAYAVGDEQTSWQTDNNLQADFATGPVAHRVLA HHHCCCCCCCCEECCCCCCHHHHHHHCEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHH GVNYDHNVWDFQFGGSGVQSAYALDISNPTYGIAGATPAYTSGSRSTQEQVGVYLQDQMR CCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCEEEEECEE LGGWHLSLAGRHDWADQTRINTYTNAVTGQRNDSAFSYSAGLLYHFDNGVAPYVSYATSF CCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCEEEEEECCCCCHHHHHHCCC QPTTSMAIDGSVLAPSEGEQFEAGVKYQPRADVLLTASVYDLTEKNAAKLAGYVNGVAYY CCCCCEEECCCEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCEEEE ASVGEIHVQGVELEARARLTPELETVTAYTFSDAEITKTTVASELNKVPAVTPKHTASSW EEECEEEEEEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHH LNYSFLNGPLDGLGLGVGVRYIDATWTSNANTDRNNGYTLVDLAMRYDLGKLARQFAGFQ CEEHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEHHHCHHHHHHHHCCCE ASVNANNIADEQIAVCNAGYCYLSQGRTVIGTLRYRW EECCCCCCCCCEEEEECCCEEEEECCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]