| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is 86749654
Identifier: 86749654
GI number: 86749654
Start: 2899276
End: 2900967
Strand: Reverse
Name: 86749654
Synonym: RPB_2534
Alternate gene names: NA
Gene position: 2900967-2899276 (Counterclockwise)
Preceding gene: 86749655
Following gene: 86749653
Centisome position: 54.41
GC content: 59.28
Gene sequence:
>1692_bases ATGAGTGCCGAGGTAAAACGTTTCGTCCATGACGAAGCGAACACGGAACGGATCCGTGTCGCCATGCGCGCTGCCATCGC CAATATCGAAACGAATCTAGTTCCGGTCGAGCGCTTGCAGCCAAGGACGCGGCTCGCGCTCGCGGTTTCTCTGCTCGGAG GCGATCATGCGCCGCGAAAGCAGAAATTCACTGCAGGCCTCCGGAACGAACTCCTAAAAGTGGATGCCGACCAGCGTCAC TACTGGCTGAGCACCTTCTACACCCTGCTTATGAGTGCGACTTTGCGCCGTGATATGGCAACGTTCTTTACGCCTCCCGC GATAGTCCGCCATCTGCTTGCGCGAGCCGAAAACGCTGGGCTGGATCTGACAACTGCCCGTGTGATCGACCCTGCAGCGG GCGGCGCCGCATTTGTGTCCACCTTGGCCGGCCGCATGACCGAGCTTGGGTGCAAGACGGACGATATCAAGAAGCGCCTC TCGGGAATCGAGATAGACGAACATCTGGCGCTGCTGGGTGAAATACTCCTCAGAGACCGGTTAAACGAAACGCGTGCTGC TGCACGACGCTCCATTCAGGTCGGCGATTCACTGAAAATCGCCAAGACCGCATTCTACGACGCAGTCTTCGTTAACCCCC CGTACGGCCGGTTGCTCGGCCTTGGGCCACAGCTTCCAGAGAGTTGGCTAGCGTTCGCTGCGCGTGGGCACATCAACCGA TATGCCCTTTTCATCGACCTTGCCTTCCGGATGGCGAAGCCTGGCGGTCTCGTCGCCACGGTCACGCCATCCAGCTTCTT GGCCGGCTCGCTGTTTCAGAGGTTGCGTGAGTACATCCGCTCAAAGGCCGAAGTGGTCCGCATCGACATTCTGGAGCGCA AGGACGTGTTTCACGACGTCCAGCAAGACGCATGCGTATCGGTGTTCCGGATGCGCTCTCAGTCTGCTTGCCTACCGGCG TTCGTGCCCAAGCTGGGTCGGGTGGATCGCAATTGGCACTTCCAGGAGATCGGAACCATCACCGCGGCGTCATCTGCTCA AGGGGCTCCCTGGGTTCTTCCGGAGCGCGCCGACGGAAGCGACGAAGCGCTGCGGTCTTGCAGGTCGCGTTTGTCGGACT ACGGCGTTACGCCAAAAGCTGGGTATTTTGTCTGGAATCGCGAAAAAGAGCGCCTTCAGAGCGGTCGAAAGTTTGGAACG GACTTCCCTCTCATCTGGGCGAGAAACATCAAGCCCGGAGACCCATGCAAACCCCGAAGCAAGTCCGGCACCGGCATCGA CTTCGTCTCCTTCGACAAGGACAATCCGGGCATCATCCGACGTTCAGCGATCATTCTCCAGCGGACAACGAATAGCAGGC AACCGCGGCGCCTAGTCGCCGCCGTGATTCCCCGACAGGTGGTCAAGCGTCACAAGGGCTTCGTCGCCGAGAACCACACC ATACTTCTGATTCCGCACGAACGCTCGAACCTGTCGCTCCTGTGCAAACTGCTGAACTCGAAAGCGGTTGACAAACGCTT TCGGTGCATCGGCGGGACATCGAGCATTTCGATATCGGCCCTGAAGGATTTGCCCCTGCCCGATCCGCGCGACATGCGGA CCGCGATGTCGCGGATCAAGGATTTCGAGACGGCCGTCGAGGTTGCCTATGAGGCCTCCCGTAAGCGAAAGACCGTGGAA AGAGCGGCATGA
Upstream 100 bases:
>100_bases TGAATCAATGCAATCCGGAGCTGCAGCTTGCCCAGCATCACTTTCGGCAAGTGAGCGTCCTCAAAATAGAGGAGCGCGGG TAACGCGTTGGCGAGGGGTC
Downstream 100 bases:
>100_bases TGGGCAGAAAGCGGCCGGACAGCTTCCAGCGCGGGGACAAGAACGACCCGCTTTCTCGCCAGGAGAGATCCAAGGCGCAG GCCGACCGGATCCGCTCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: Restriction Methylase; N-6 DNA Methylase; Methylase; Methyltransferase Small; Restriction Methylase; Ethyltransferase Homolog M.XphI; Methylase BsuBI; RNA Methylase; DNA Methylase
Number of amino acids: Translated: 563; Mature: 562
Protein sequence:
>563_residues MSAEVKRFVHDEANTERIRVAMRAAIANIETNLVPVERLQPRTRLALAVSLLGGDHAPRKQKFTAGLRNELLKVDADQRH YWLSTFYTLLMSATLRRDMATFFTPPAIVRHLLARAENAGLDLTTARVIDPAAGGAAFVSTLAGRMTELGCKTDDIKKRL SGIEIDEHLALLGEILLRDRLNETRAAARRSIQVGDSLKIAKTAFYDAVFVNPPYGRLLGLGPQLPESWLAFAARGHINR YALFIDLAFRMAKPGGLVATVTPSSFLAGSLFQRLREYIRSKAEVVRIDILERKDVFHDVQQDACVSVFRMRSQSACLPA FVPKLGRVDRNWHFQEIGTITAASSAQGAPWVLPERADGSDEALRSCRSRLSDYGVTPKAGYFVWNREKERLQSGRKFGT DFPLIWARNIKPGDPCKPRSKSGTGIDFVSFDKDNPGIIRRSAIILQRTTNSRQPRRLVAAVIPRQVVKRHKGFVAENHT ILLIPHERSNLSLLCKLLNSKAVDKRFRCIGGTSSISISALKDLPLPDPRDMRTAMSRIKDFETAVEVAYEASRKRKTVE RAA
Sequences:
>Translated_563_residues MSAEVKRFVHDEANTERIRVAMRAAIANIETNLVPVERLQPRTRLALAVSLLGGDHAPRKQKFTAGLRNELLKVDADQRH YWLSTFYTLLMSATLRRDMATFFTPPAIVRHLLARAENAGLDLTTARVIDPAAGGAAFVSTLAGRMTELGCKTDDIKKRL SGIEIDEHLALLGEILLRDRLNETRAAARRSIQVGDSLKIAKTAFYDAVFVNPPYGRLLGLGPQLPESWLAFAARGHINR YALFIDLAFRMAKPGGLVATVTPSSFLAGSLFQRLREYIRSKAEVVRIDILERKDVFHDVQQDACVSVFRMRSQSACLPA FVPKLGRVDRNWHFQEIGTITAASSAQGAPWVLPERADGSDEALRSCRSRLSDYGVTPKAGYFVWNREKERLQSGRKFGT DFPLIWARNIKPGDPCKPRSKSGTGIDFVSFDKDNPGIIRRSAIILQRTTNSRQPRRLVAAVIPRQVVKRHKGFVAENHT ILLIPHERSNLSLLCKLLNSKAVDKRFRCIGGTSSISISALKDLPLPDPRDMRTAMSRIKDFETAVEVAYEASRKRKTVE RAA >Mature_562_residues SAEVKRFVHDEANTERIRVAMRAAIANIETNLVPVERLQPRTRLALAVSLLGGDHAPRKQKFTAGLRNELLKVDADQRHY WLSTFYTLLMSATLRRDMATFFTPPAIVRHLLARAENAGLDLTTARVIDPAAGGAAFVSTLAGRMTELGCKTDDIKKRLS GIEIDEHLALLGEILLRDRLNETRAAARRSIQVGDSLKIAKTAFYDAVFVNPPYGRLLGLGPQLPESWLAFAARGHINRY ALFIDLAFRMAKPGGLVATVTPSSFLAGSLFQRLREYIRSKAEVVRIDILERKDVFHDVQQDACVSVFRMRSQSACLPAF VPKLGRVDRNWHFQEIGTITAASSAQGAPWVLPERADGSDEALRSCRSRLSDYGVTPKAGYFVWNREKERLQSGRKFGTD FPLIWARNIKPGDPCKPRSKSGTGIDFVSFDKDNPGIIRRSAIILQRTTNSRQPRRLVAAVIPRQVVKRHKGFVAENHTI LLIPHERSNLSLLCKLLNSKAVDKRFRCIGGTSSISISALKDLPLPDPRDMRTAMSRIKDFETAVEVAYEASRKRKTVER AA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62873; Mature: 62742
Theoretical pI: Translated: 10.79; Mature: 10.79
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAEVKRFVHDEANTERIRVAMRAAIANIETNLVPVERLQPRTRLALAVSLLGGDHAPRK CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEHHHCCCHHHHHHHHHHHCCCCCCCH QKFTAGLRNELLKVDADQRHYWLSTFYTLLMSATLRRDMATFFTPPAIVRHLLARAENAG HHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC LDLTTARVIDPAAGGAAFVSTLAGRMTELGCKTDDIKKRLSGIEIDEHLALLGEILLRDR CCEEHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH LNETRAAARRSIQVGDSLKIAKTAFYDAVFVNPPYGRLLGLGPQLPESWLAFAARGHINR HHHHHHHHHHHHCCCCCCHHHHHHHHCEEEECCCCHHHCCCCCCCCHHHHHHHHHCCCCH YALFIDLAFRMAKPGGLVATVTPSSFLAGSLFQRLREYIRSKAEVVRIDILERKDVFHDV HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCHHEEEEEHHHHHHHHHHH QQDACVSVFRMRSQSACLPAFVPKLGRVDRNWHFQEIGTITAASSAQGAPWVLPERADGS HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHCCEEECCCCCCCCCCCCCCCCCC DEALRSCRSRLSDYGVTPKAGYFVWNREKERLQSGRKFGTDFPLIWARNIKPGDPCKPRS HHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCC KSGTGIDFVSFDKDNPGIIRRSAIILQRTTNSRQPRRLVAAVIPRQVVKRHKGFVAENHT CCCCCCEEEEECCCCCCEEEHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEECCCE ILLIPHERSNLSLLCKLLNSKAVDKRFRCIGGTSSISISALKDLPLPDPRDMRTAMSRIK EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCCCCCCHHHHHHHHHHH DFETAVEVAYEASRKRKTVERAA HHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SAEVKRFVHDEANTERIRVAMRAAIANIETNLVPVERLQPRTRLALAVSLLGGDHAPRK CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEHHHCCCHHHHHHHHHHHCCCCCCCH QKFTAGLRNELLKVDADQRHYWLSTFYTLLMSATLRRDMATFFTPPAIVRHLLARAENAG HHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC LDLTTARVIDPAAGGAAFVSTLAGRMTELGCKTDDIKKRLSGIEIDEHLALLGEILLRDR CCEEHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH LNETRAAARRSIQVGDSLKIAKTAFYDAVFVNPPYGRLLGLGPQLPESWLAFAARGHINR HHHHHHHHHHHHCCCCCCHHHHHHHHCEEEECCCCHHHCCCCCCCCHHHHHHHHHCCCCH YALFIDLAFRMAKPGGLVATVTPSSFLAGSLFQRLREYIRSKAEVVRIDILERKDVFHDV HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCHHEEEEEHHHHHHHHHHH QQDACVSVFRMRSQSACLPAFVPKLGRVDRNWHFQEIGTITAASSAQGAPWVLPERADGS HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHCCEEECCCCCCCCCCCCCCCCCC DEALRSCRSRLSDYGVTPKAGYFVWNREKERLQSGRKFGTDFPLIWARNIKPGDPCKPRS HHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCC KSGTGIDFVSFDKDNPGIIRRSAIILQRTTNSRQPRRLVAAVIPRQVVKRHKGFVAENHT CCCCCCEEEEECCCCCCEEEHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEECCCE ILLIPHERSNLSLLCKLLNSKAVDKRFRCIGGTSSISISALKDLPLPDPRDMRTAMSRIK EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCCCCCCHHHHHHHHHHH DFETAVEVAYEASRKRKTVERAA HHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA