| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is fabG [H]
Identifier: 86749384
GI number: 86749384
Start: 2612501
End: 2613268
Strand: Direct
Name: fabG [H]
Synonym: RPB_2264
Alternate gene names: 86749384
Gene position: 2612501-2613268 (Clockwise)
Preceding gene: 86749383
Following gene: 86749386
Centisome position: 49.0
GC content: 64.84
Gene sequence:
>768_bases ATGAGCTTGTTCGACCTGAGCGGAAAAGTCGCTGTGATCACCGGATCGTCGCGAGGCATCGGCAAGGCGATCGCCGAGCG GATGGCCGAGCACGGCGCCAAGGTGGTGATCTCGTCGCGCAAGCAGGACGCCTGTGACGCCGTTGCCAAGTCGATCAATG ATGCGCGCGGGGCAGGGACGGCACTGGCGATCGCCGCCAATATTTCCAGCAAGACCGACCTGGAGCGCCTCGCCAACGAA GCGACCGCGGCGTTCGGCAAGATCGACGCGCTGGTCTGCAACGCCGCGTCGAATCCGTATTACGGCCCGCAGTCGGGCAT CAGCGACGATCAGTTCAGGAAGATTCTGGACAACAACATCGTCGCCAATCACTGGCTGATCAGCGCCGTTGCGCCGCAGA TGATCGCCCGCAAGGACGGTTCGATCACCATCGTCTCGTCGATCGGCGGCCTGAAGGGCTCGACCGTGATCGGCGCCTAC TGCATCTCCAAGGCCGCCGACATGCAGCTGGCGCGCAACCTCGCCTGCGAATATGGCGAGCACAATATCCGCGTGAACTG CATCGCGCCGGGCTTGATCAAGACCGATTTCGCCCGCGCGCTGTGGGAAAACCCCGAGACGCTGAAAGCCTCGACCGCGC GCTCGCCGCTGCAGCGGATCGGCGAGCCAGACGAAATCGCCGGCGCCGCTGTGTTCCTCGCCTCCGCCGCGGGCAGCTTC ACGACGGGGCAGACGCTGGTGATCGACGGCGGCGCGACGATCAGCTGA
Upstream 100 bases:
>100_bases CAATCCAGACCTGTGCACTGCGCTGGATTGCTTCGTCGCTACGCTCCTCACAATGACGGATAGGTCATCGACACACAACA ATTAACAACGGGAGAGAAAC
Downstream 100 bases:
>100_bases ACGGTTCGCCACGCGAACCGACGTCATCCTGAGGCGCTCGCCGTTTTCGGCGAGCCTCGAAGGATATGCGACGGGTCCAT GCGGCTCATCCTTCGAGGCG
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MSLFDLSGKVAVITGSSRGIGKAIAERMAEHGAKVVISSRKQDACDAVAKSINDARGAGTALAIAANISSKTDLERLANE ATAAFGKIDALVCNAASNPYYGPQSGISDDQFRKILDNNIVANHWLISAVAPQMIARKDGSITIVSSIGGLKGSTVIGAY CISKAADMQLARNLACEYGEHNIRVNCIAPGLIKTDFARALWENPETLKASTARSPLQRIGEPDEIAGAAVFLASAAGSF TTGQTLVIDGGATIS
Sequences:
>Translated_255_residues MSLFDLSGKVAVITGSSRGIGKAIAERMAEHGAKVVISSRKQDACDAVAKSINDARGAGTALAIAANISSKTDLERLANE ATAAFGKIDALVCNAASNPYYGPQSGISDDQFRKILDNNIVANHWLISAVAPQMIARKDGSITIVSSIGGLKGSTVIGAY CISKAADMQLARNLACEYGEHNIRVNCIAPGLIKTDFARALWENPETLKASTARSPLQRIGEPDEIAGAAVFLASAAGSF TTGQTLVIDGGATIS >Mature_254_residues SLFDLSGKVAVITGSSRGIGKAIAERMAEHGAKVVISSRKQDACDAVAKSINDARGAGTALAIAANISSKTDLERLANEA TAAFGKIDALVCNAASNPYYGPQSGISDDQFRKILDNNIVANHWLISAVAPQMIARKDGSITIVSSIGGLKGSTVIGAYC ISKAADMQLARNLACEYGEHNIRVNCIAPGLIKTDFARALWENPETLKASTARSPLQRIGEPDEIAGAAVFLASAAGSFT TGQTLVIDGGATIS
Specific function: 7-Alpha-Dehydroxylation Of Cholic Acid, Yielding Deoxycholic Acid And Lithocholic Acid, Respectively. Highest Affinity With Taurochenodeoxycholic Acid. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=41.2955465587045, Blast_Score=182, Evalue=2e-46, Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=39.3574297188755, Blast_Score=166, Evalue=2e-41, Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=34.4, Blast_Score=145, Evalue=3e-35, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=41.1167512690355, Blast_Score=138, Evalue=4e-33, Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=32.1705426356589, Blast_Score=124, Evalue=9e-29, Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=39.6739130434783, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=3e-26, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=7e-26, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=30.5555555555556, Blast_Score=104, Evalue=9e-23, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=30.3964757709251, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI226371731, Length=189, Percent_Identity=31.7460317460317, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI4503301, Length=251, Percent_Identity=29.0836653386454, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=27.9527559055118, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI210032110, Length=210, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=26.1904761904762, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=40.7407407407407, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI32455239, Length=197, Percent_Identity=29.9492385786802, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI5031765, Length=197, Percent_Identity=29.9492385786802, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI7705855, Length=196, Percent_Identity=28.0612244897959, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=28.125, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=28.8659793814433, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI20149619, Length=197, Percent_Identity=27.9187817258883, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI142976729, Length=226, Percent_Identity=26.1061946902655, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI40807363, Length=199, Percent_Identity=27.1356783919598, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI7657478, Length=216, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI223718074, Length=203, Percent_Identity=29.5566502463054, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI7706318, Length=202, Percent_Identity=27.2277227722772, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI209862901, Length=216, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI19923983, Length=216, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4504505, Length=200, Percent_Identity=31, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI4503817, Length=191, Percent_Identity=29.8429319371728, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=38.1526104417671, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=35.7976653696498, Blast_Score=130, Evalue=7e-32, Organism=Escherichia coli, GI1790717, Length=253, Percent_Identity=31.6205533596838, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=33.0645161290323, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=31.1023622047244, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=30.4347826086957, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=30.5220883534137, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=31.5789473684211, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI2367175, Length=257, Percent_Identity=31.1284046692607, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786812, Length=262, Percent_Identity=28.6259541984733, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=29.0836653386454, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787526, Length=215, Percent_Identity=28.3720930232558, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786701, Length=196, Percent_Identity=30.6122448979592, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1789057, Length=261, Percent_Identity=25.2873563218391, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787820, Length=194, Percent_Identity=27.319587628866, Blast_Score=65, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=36, Blast_Score=160, Evalue=7e-40, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=36.144578313253, Blast_Score=149, Evalue=2e-36, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=34.6007604562738, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=32.2709163346614, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=32.0610687022901, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=34.6613545816733, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=33.4600760456274, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=30.5343511450382, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17559104, Length=259, Percent_Identity=33.976833976834, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=31.5789473684211, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=32.5396825396825, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=31.1787072243346, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=31.8181818181818, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=33.457249070632, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=30.4182509505703, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=32.0754716981132, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=30.3703703703704, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=30.5970149253731, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=31.0344827586207, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=30, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.7984790874525, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI25147288, Length=275, Percent_Identity=29.4545454545455, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=26.4822134387352, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=30.3030303030303, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=29.5275590551181, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=28.8973384030418, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=24.0963855421687, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=29.1338582677165, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71997099, Length=228, Percent_Identity=30.7017543859649, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=29.0196078431373, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17567345, Length=193, Percent_Identity=31.0880829015544, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17555612, Length=222, Percent_Identity=29.2792792792793, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=25.7575757575758, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17568967, Length=208, Percent_Identity=29.8076923076923, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193210355, Length=202, Percent_Identity=23.2673267326733, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6324126, Length=248, Percent_Identity=31.4516129032258, Blast_Score=104, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6323882, Length=248, Percent_Identity=25.8064516129032, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322226, Length=209, Percent_Identity=28.7081339712919, Blast_Score=71, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=31.0880829015544, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6319635, Length=255, Percent_Identity=25.8823529411765, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=205, Percent_Identity=27.8048780487805, Blast_Score=70, Evalue=4e-13, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=38.9558232931727, Blast_Score=171, Evalue=5e-43, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=35.6275303643725, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=32.9365079365079, Blast_Score=120, Evalue=6e-28, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=34.0080971659919, Blast_Score=118, Evalue=5e-27, Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=32.9411764705882, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI24644337, Length=256, Percent_Identity=35.546875, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=30.3149606299213, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=29.9212598425197, Blast_Score=92, Evalue=2e-19, Organism=Drosophila melanogaster, GI24640492, Length=205, Percent_Identity=29.2682926829268, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI24640442, Length=235, Percent_Identity=30.2127659574468, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI17737361, Length=252, Percent_Identity=27.3809523809524, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=27.2251308900524, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI28574402, Length=197, Percent_Identity=28.4263959390863, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24584744, Length=197, Percent_Identity=28.4263959390863, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=27.2251308900524, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=26.530612244898, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI281364892, Length=202, Percent_Identity=28.2178217821782, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI221510726, Length=198, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24649181, Length=197, Percent_Identity=24.3654822335025, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24648944, Length=233, Percent_Identity=27.0386266094421, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24581726, Length=203, Percent_Identity=27.0935960591133, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24580925, Length=203, Percent_Identity=28.0788177339901, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 26423; Mature: 26292
Theoretical pI: Translated: 7.86; Mature: 7.86
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFDLSGKVAVITGSSRGIGKAIAERMAEHGAKVVISSRKQDACDAVAKSINDARGAGT CCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCC ALAIAANISSKTDLERLANEATAAFGKIDALVCNAASNPYYGPQSGISDDQFRKILDNNI EEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHCCC VANHWLISAVAPQMIARKDGSITIVSSIGGLKGSTVIGAYCISKAADMQLARNLACEYGE HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC HNIRVNCIAPGLIKTDFARALWENPETLKASTARSPLQRIGEPDEIAGAAVFLASAAGSF CCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC TTGQTLVIDGGATIS CCCCEEEEECCCCCC >Mature Secondary Structure SLFDLSGKVAVITGSSRGIGKAIAERMAEHGAKVVISSRKQDACDAVAKSINDARGAGT CEEECCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCC ALAIAANISSKTDLERLANEATAAFGKIDALVCNAASNPYYGPQSGISDDQFRKILDNNI EEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHCCC VANHWLISAVAPQMIARKDGSITIVSSIGGLKGSTVIGAYCISKAADMQLARNLACEYGE HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC HNIRVNCIAPGLIKTDFARALWENPETLKASTARSPLQRIGEPDEIAGAAVFLASAAGSF CCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC TTGQTLVIDGGATIS CCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10684935 [H]