Click here to switch to the map view.

The map label for this gene is degS [C]

Identifier: 86749329

GI number: 86749329

Start: 2512053

End: 2512796

Strand: Direct

Name: degS [C]

Synonym: RPB_2209

Alternate gene names: 86749329

Gene position: 2512053-2512796 (Clockwise)

Preceding gene: 86749327

Following gene: 86749330

Centisome position: 47.12

GC content: 65.46

Gene sequence:

>744_bases
ATGCTTCGAACCACGCTTCTGATCGCTGGATGGACCGCCGCCGGCTTGTTGCCTGCGATGGGCCAGTCGTTGCCAAGCAG
CATTGCCGAACGCGGACGAGAGCTGTCGCAGCAACCCGACCGGCTGTCGCACACGGCAAGATCAGTCAGTTTCCGGCGCG
AGCTGAACGGGACTGCGTTTTTTGTCGATGGAGCCGGACACATGCTGACGGCTCGCCATGCGGTCGAGGATTGCGCGCGC
GTCGTGATTGCCAAGGAGGGGCGGTCGTTCGCGGCACGGGTGGTGGCGCTGTCGCCGCGTGAGGATCTTGCGCTGCTCAA
GGTGCCGAAGACGCTCGGCCTGGCTGCCGTGTTCCCTCGAAATTCGTCCCCCGCAACCAGCGATCTGATGTTCGCGGCGT
CCTATGACAATCTGCCGGGCATGATTGCAGGCGGCGGGACGCTCGCCAATGCGGTGGTTGCGGATCGCCGGAACGGTAGC
GGGACGCTGGAGCTCGAATCCAATGCCAGCTTCGGAACAAGCGGCGCGCCGGTTCTGAACAGCCGCGGTCTGGTCGAAGG
CGTCGTCAGTCGGCGCCGCATGATCAACCGCGTGCAGGCGGTCGGGACCACCGAAGCGAAGGCGTTCCTCGCCAGTCACA
GCGTCAGGCCGTCCGAGGACGACCGGCCTCAAATTGCCGGGGGCGGCTCGCGCGCCCATCGCGCGGCATCGATTTCCGCG
CGGGTCACATGCCTGCAAAATTGA

Upstream 100 bases:

>100_bases
CCGGATGTTGCGAATGAGAATTGCGATTGACAGCGACGATGGTGCTCGTCAGTAGCTGGCAGCTCACTCCAACGGTCACG
CTACGAGACATGTTGCGCCG

Downstream 100 bases:

>100_bases
GCGGCGATGTTCGGGCGTCGGATTCGGCCGACCGGGGAGACATAGAAGTGGCGGTGTTCGCGATCAATCGGCTGGGTGTG
CGAAGTTGCGTCCTCGCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MLRTTLLIAGWTAAGLLPAMGQSLPSSIAERGRELSQQPDRLSHTARSVSFRRELNGTAFFVDGAGHMLTARHAVEDCAR
VVIAKEGRSFAARVVALSPREDLALLKVPKTLGLAAVFPRNSSPATSDLMFAASYDNLPGMIAGGGTLANAVVADRRNGS
GTLELESNASFGTSGAPVLNSRGLVEGVVSRRRMINRVQAVGTTEAKAFLASHSVRPSEDDRPQIAGGGSRAHRAASISA
RVTCLQN

Sequences:

>Translated_247_residues
MLRTTLLIAGWTAAGLLPAMGQSLPSSIAERGRELSQQPDRLSHTARSVSFRRELNGTAFFVDGAGHMLTARHAVEDCAR
VVIAKEGRSFAARVVALSPREDLALLKVPKTLGLAAVFPRNSSPATSDLMFAASYDNLPGMIAGGGTLANAVVADRRNGS
GTLELESNASFGTSGAPVLNSRGLVEGVVSRRRMINRVQAVGTTEAKAFLASHSVRPSEDDRPQIAGGGSRAHRAASISA
RVTCLQN
>Mature_247_residues
MLRTTLLIAGWTAAGLLPAMGQSLPSSIAERGRELSQQPDRLSHTARSVSFRRELNGTAFFVDGAGHMLTARHAVEDCAR
VVIAKEGRSFAARVVALSPREDLALLKVPKTLGLAAVFPRNSSPATSDLMFAASYDNLPGMIAGGGTLANAVVADRRNGS
GTLELESNASFGTSGAPVLNSRGLVEGVVSRRRMINRVQAVGTTEAKAFLASHSVRPSEDDRPQIAGGGSRAHRAASISA
RVTCLQN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR001254
- InterPro:   IPR001940 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 25930; Mature: 25930

Theoretical pI: Translated: 11.40; Mature: 11.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTTLLIAGWTAAGLLPAMGQSLPSSIAERGRELSQQPDRLSHTARSVSFRRELNGTAF
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEE
FVDGAGHMLTARHAVEDCARVVIAKEGRSFAARVVALSPREDLALLKVPKTLGLAAVFPR
EEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEECCCHHCEEEEECC
NSSPATSDLMFAASYDNLPGMIAGGGTLANAVVADRRNGSGTLELESNASFGTSGAPVLN
CCCCCCHHEEEEECCCCCCCEEECCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
SRGLVEGVVSRRRMINRVQAVGTTEAKAFLASHSVRPSEDDRPQIAGGGSRAHRAASISA
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHEEEE
RVTCLQN
EEEEECC
>Mature Secondary Structure
MLRTTLLIAGWTAAGLLPAMGQSLPSSIAERGRELSQQPDRLSHTARSVSFRRELNGTAF
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEE
FVDGAGHMLTARHAVEDCARVVIAKEGRSFAARVVALSPREDLALLKVPKTLGLAAVFPR
EEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEECCCHHCEEEEECC
NSSPATSDLMFAASYDNLPGMIAGGGTLANAVVADRRNGSGTLELESNASFGTSGAPVLN
CCCCCCHHEEEEECCCCCCCEEECCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
SRGLVEGVVSRRRMINRVQAVGTTEAKAFLASHSVRPSEDDRPQIAGGGSRAHRAASISA
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHEEEE
RVTCLQN
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]