| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86749298
Identifier: 86749298
GI number: 86749298
Start: 2470867
End: 2472105
Strand: Direct
Name: 86749298
Synonym: RPB_2177
Alternate gene names: NA
Gene position: 2470867-2472105 (Clockwise)
Preceding gene: 86749294
Following gene: 86749301
Centisome position: 46.34
GC content: 64.25
Gene sequence:
>1239_bases ATGACGACGATGACGATGACGACGAAGAAGATGACAGCCCTGGTTCGGATCGGTGTCGTGTTGGCGGGCGCAGCGCTCGC CGCGTCTCCCGTCGCGGCGCAACAGCCGTCGCGCGAACCTGTGCAGGTCGCCTCCGGCGTCTCCTATCAATATCTCGATC GCTGGGACGTCGATCGCCTCAACAAGATCCTGACCACCGACACGCCGAAATTCGCCGGCATCAAGGTGACCTACACGCCC GCCACCAACGCGGTGAAACTGTATCGCGTGACCTATTCGTCGGTAGTGCCCGAGCGCGGCAACAAGCCGATCGTCGCCAC CGGACTGATCGCGGTGCCCGATACCAAGACGACGTCGTTTCCGATGGTCTCCTATCAGCACGGCACGGTGTACGGAAAGC AGGAGGTGCCGTCGTTCCCGGAGCAGTCGCCCGAGACCCAGCTGATGATCGCGCAATTCGCCGGGCAGGGCTATCTCGTG ATCGGCGCCGACTACTTCGGCATGGGCAGCTCGACCGAGCCGGAAGGCTACATGGTCAAGGGCAGCCATCAGCAGGCGAC CTACGACATGGTCGTCGCCAGCCGCGCCGTGCTCGCCGATCTCAAGCTCGCCGACACCAAGCTGTTCCTCAGCGGCTGGT CGCAGGGCGGCTTCGTCACCCTGGCGATGCTGGAGAAGCTTGAAGCCGCCGGCATGAAGGTGAATGCGGCGGCCACCGCC AGCGCGCCGGCCGACGCTTTCGCCGCGTTCGAGGGCTTCCTCGACTTTCCGCGCAAGATCGACGCGAGCTGGATTCCGAC GATCTTCATCCTGACCGCGTTCTCGTTCGAGAACTACTACGGCGTGCCGGGTCTCGCCCGCTCGCTGCTGACCGAGGACA CGTATGAGAACGCGCGCAAGGCCTATCTGCGCGAGCCGTTCGACCAGGCCGCGATCCCGACCGATCTGAAGAAGCTGATC CGGCCGGAATATTTCGACACGCACTACTTCGCCAATTCGGCCTATGGCCGCATCGTCGCGCAGACGCAGTCCTATCGCTG GGTGGTGAAGACCCCGGTGCGCACCTATTACGGCCTGACCGACGAGGCGATCCGCACCGAGCTCGGGCAACTGCCGATGA CCTGGCAGAAGGCGATGGGCAACGACAAGATCGAGGCGGTGCCGACCGGCGACACCAGCCATCGCGGCACCTTCGCCACC GCCGTGCCGCAATGGAAGGCGTGGTTCGACGGCAAGTAA
Upstream 100 bases:
>100_bases CAGCAAACAAGGTCGGCGGCGCATCGACGGAACTCAATCTTTACCGTCGATTGCTACACAGCCGCGCGCAACGCGAACGT CTCGGTGACACATGACGAAG
Downstream 100 bases:
>100_bases CCGCCGGCGCGGCGACACCGGACGCTACACCGCGCCGACCGCAAGCAGCGCGCCGGCGAGCGCGCTGCCCGCCACCACGA CCAGCGGCGGCGCGCGCCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MTTMTMTTKKMTALVRIGVVLAGAALAASPVAAQQPSREPVQVASGVSYQYLDRWDVDRLNKILTTDTPKFAGIKVTYTP ATNAVKLYRVTYSSVVPERGNKPIVATGLIAVPDTKTTSFPMVSYQHGTVYGKQEVPSFPEQSPETQLMIAQFAGQGYLV IGADYFGMGSSTEPEGYMVKGSHQQATYDMVVASRAVLADLKLADTKLFLSGWSQGGFVTLAMLEKLEAAGMKVNAAATA SAPADAFAAFEGFLDFPRKIDASWIPTIFILTAFSFENYYGVPGLARSLLTEDTYENARKAYLREPFDQAAIPTDLKKLI RPEYFDTHYFANSAYGRIVAQTQSYRWVVKTPVRTYYGLTDEAIRTELGQLPMTWQKAMGNDKIEAVPTGDTSHRGTFAT AVPQWKAWFDGK
Sequences:
>Translated_412_residues MTTMTMTTKKMTALVRIGVVLAGAALAASPVAAQQPSREPVQVASGVSYQYLDRWDVDRLNKILTTDTPKFAGIKVTYTP ATNAVKLYRVTYSSVVPERGNKPIVATGLIAVPDTKTTSFPMVSYQHGTVYGKQEVPSFPEQSPETQLMIAQFAGQGYLV IGADYFGMGSSTEPEGYMVKGSHQQATYDMVVASRAVLADLKLADTKLFLSGWSQGGFVTLAMLEKLEAAGMKVNAAATA SAPADAFAAFEGFLDFPRKIDASWIPTIFILTAFSFENYYGVPGLARSLLTEDTYENARKAYLREPFDQAAIPTDLKKLI RPEYFDTHYFANSAYGRIVAQTQSYRWVVKTPVRTYYGLTDEAIRTELGQLPMTWQKAMGNDKIEAVPTGDTSHRGTFAT AVPQWKAWFDGK >Mature_411_residues TTMTMTTKKMTALVRIGVVLAGAALAASPVAAQQPSREPVQVASGVSYQYLDRWDVDRLNKILTTDTPKFAGIKVTYTPA TNAVKLYRVTYSSVVPERGNKPIVATGLIAVPDTKTTSFPMVSYQHGTVYGKQEVPSFPEQSPETQLMIAQFAGQGYLVI GADYFGMGSSTEPEGYMVKGSHQQATYDMVVASRAVLADLKLADTKLFLSGWSQGGFVTLAMLEKLEAAGMKVNAAATAS APADAFAAFEGFLDFPRKIDASWIPTIFILTAFSFENYYGVPGLARSLLTEDTYENARKAYLREPFDQAAIPTDLKKLIR PEYFDTHYFANSAYGRIVAQTQSYRWVVKTPVRTYYGLTDEAIRTELGQLPMTWQKAMGNDKIEAVPTGDTSHRGTFATA VPQWKAWFDGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45226; Mature: 45095
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: PS00120 LIPASE_SER ; PS00708 PRO_ENDOPEP_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTMTMTTKKMTALVRIGVVLAGAALAASPVAAQQPSREPVQVASGVSYQYLDRWDVDRL CCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEHHCCCCHHHH NKILTTDTPKFAGIKVTYTPATNAVKLYRVTYSSVVPERGNKPIVATGLIAVPDTKTTSF HHHHCCCCCCCCEEEEEECCCCCCEEEEEEEHHHHCCCCCCCCEEEEEEEECCCCCCCCC PMVSYQHGTVYGKQEVPSFPEQSPETQLMIAQFAGQGYLVIGADYFGMGSSTEPEGYMVK CEEEECCCEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCEECCCCCCCCCCEEEE GSHQQATYDMVVASRAVLADLKLADTKLFLSGWSQGGFVTLAMLEKLEAAGMKVNAAATA CCCCCHHHHHHHHHHHHHHHCCHHCEEEEEECCCCCCEEHHHHHHHHHHCCEEEEECCCC SAPADAFAAFEGFLDFPRKIDASWIPTIFILTAFSFENYYGVPGLARSLLTEDTYENARK CCCHHHHHHHHHHHHCCHHCCCCCCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH AYLREPFDQAAIPTDLKKLIRPEYFDTHYFANSAYGRIVAQTQSYRWVVKTPVRTYYGLT HHHHCCHHHCCCCHHHHHHHCCCCCCHHHCCCCCCCEEEEECCCCEEEEECCHHHHCCCC DEAIRTELGQLPMTWQKAMGNDKIEAVPTGDTSHRGTFATAVPQWKAWFDGK HHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCC >Mature Secondary Structure TTMTMTTKKMTALVRIGVVLAGAALAASPVAAQQPSREPVQVASGVSYQYLDRWDVDRL CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEHHCCCCHHHH NKILTTDTPKFAGIKVTYTPATNAVKLYRVTYSSVVPERGNKPIVATGLIAVPDTKTTSF HHHHCCCCCCCCEEEEEECCCCCCEEEEEEEHHHHCCCCCCCCEEEEEEEECCCCCCCCC PMVSYQHGTVYGKQEVPSFPEQSPETQLMIAQFAGQGYLVIGADYFGMGSSTEPEGYMVK CEEEECCCEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCEECCCCCCCCCCEEEE GSHQQATYDMVVASRAVLADLKLADTKLFLSGWSQGGFVTLAMLEKLEAAGMKVNAAATA CCCCCHHHHHHHHHHHHHHHCCHHCEEEEEECCCCCCEEHHHHHHHHHHCCEEEEECCCC SAPADAFAAFEGFLDFPRKIDASWIPTIFILTAFSFENYYGVPGLARSLLTEDTYENARK CCCHHHHHHHHHHHHCCHHCCCCCCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH AYLREPFDQAAIPTDLKKLIRPEYFDTHYFANSAYGRIVAQTQSYRWVVKTPVRTYYGLT HHHHCCHHHCCCCHHHHHHHCCCCCCHHHCCCCCCCEEEEECCCCEEEEECCHHHHCCCC DEAIRTELGQLPMTWQKAMGNDKIEAVPTGDTSHRGTFATAVPQWKAWFDGK HHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA