| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is glpG [C]
Identifier: 86749273
GI number: 86749273
Start: 2442386
End: 2443225
Strand: Direct
Name: glpG [C]
Synonym: RPB_2152
Alternate gene names: 86749273
Gene position: 2442386-2443225 (Clockwise)
Preceding gene: 86749271
Following gene: 86749274
Centisome position: 45.81
GC content: 70.12
Gene sequence:
>840_bases ATGGGATCGCATCGCCTCCGGGCCGCGCCGCGGCCGGGCGCTCGTAGCAGGTCGTTCACGTTGGATTCGTCGCCCGAAAC GCAGCCGCTGCCGCCGTCGCCGCCGGAGCCGCCGCGCGAACCGATCCTCAACCTGCCGCGCGCGCTGACCGCCTATGTGG CGCTGCTGGCGGTGATCCATCTGCGCGTGCTGCTGCCGCCGGACATCGACTACTGGACCATCGAGATGTTCGGCTTCATC CCGAAGCGCTACGACGCCACGCTGCTGTCGGCGCCGTTTCCGGGCGGCACCGGCGCCAAGATCTGGACCTTCGTCACCTA TTCGCTGCTCCACGCCAATCTCAGCCACATCTTCTTCAACGTGCTGTGGCTGCTGCCGTTCGGCAGCGCGCTGGCGCGGC GGTTCGGCGCGGCGCGGTTCTTCCTGTTCATGGCGGTCACCGCGATCGGTGGCGCGCTGGCGCATCTTCTCACTCACGCC CACGAGATCGCGCCGATGATCGGCGCCTCGGCTTCGGTGTCGGGCGCGATGGCCGCGGCGATCCGCTTCGCCTTCGCCCG CGGCAGCTTCCTGTCGTTCCGCAGCGGCGACGCCGACGCCGCGGCGCGGGTGCCGGCGCAGCCGCTGCTGCGGGCGCTGC GCGATCCGCGGGTGATCGCCTTCCTGGCGATCTGGTTCGGCATCAACATCATCTTCGGCGTCGGCTCGATCGCGGTCGGC AACGAAGGCGCCAGCGTCGCCTGGCAGGCGCATATCGGCGGCTTCTTCGCCGGCCTGCTGCTGTTCTCGCTGTTCGACCC GGTGCCGCGCCGCGCGCCGGCGGTGATCGATCCGAACTAA
Upstream 100 bases:
>100_bases AAGTCCCGGCTGACAGGTCCTGGCTGACAGATCCCGCCGGCGAGGGCCGCCGGACGGCGGCGCGGCGACGCCCGGCTTGC ACCGTCTGGCCAAGCCGCTT
Downstream 100 bases:
>100_bases TCGTCCATCCGCGACCCTCGACCGTTGCACTGCGGTCGCTTTGCTGCGCTGCAAGCAGCACGGCGCGGATTCGCCTCATT TGTTAGTTATGATTTGCAAC
Product: rhomboid-like protein
Products: NA
Alternate protein names: Rhomboid Family Protein; Peptidase
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MGSHRLRAAPRPGARSRSFTLDSSPETQPLPPSPPEPPREPILNLPRALTAYVALLAVIHLRVLLPPDIDYWTIEMFGFI PKRYDATLLSAPFPGGTGAKIWTFVTYSLLHANLSHIFFNVLWLLPFGSALARRFGAARFFLFMAVTAIGGALAHLLTHA HEIAPMIGASASVSGAMAAAIRFAFARGSFLSFRSGDADAAARVPAQPLLRALRDPRVIAFLAIWFGINIIFGVGSIAVG NEGASVAWQAHIGGFFAGLLLFSLFDPVPRRAPAVIDPN
Sequences:
>Translated_279_residues MGSHRLRAAPRPGARSRSFTLDSSPETQPLPPSPPEPPREPILNLPRALTAYVALLAVIHLRVLLPPDIDYWTIEMFGFI PKRYDATLLSAPFPGGTGAKIWTFVTYSLLHANLSHIFFNVLWLLPFGSALARRFGAARFFLFMAVTAIGGALAHLLTHA HEIAPMIGASASVSGAMAAAIRFAFARGSFLSFRSGDADAAARVPAQPLLRALRDPRVIAFLAIWFGINIIFGVGSIAVG NEGASVAWQAHIGGFFAGLLLFSLFDPVPRRAPAVIDPN >Mature_278_residues GSHRLRAAPRPGARSRSFTLDSSPETQPLPPSPPEPPREPILNLPRALTAYVALLAVIHLRVLLPPDIDYWTIEMFGFIP KRYDATLLSAPFPGGTGAKIWTFVTYSLLHANLSHIFFNVLWLLPFGSALARRFGAARFFLFMAVTAIGGALAHLLTHAH EIAPMIGASASVSGAMAAAIRFAFARGSFLSFRSGDADAAARVPAQPLLRALRDPRVIAFLAIWFGINIIFGVGSIAVGN EGASVAWQAHIGGFFAGLLLFSLFDPVPRRAPAVIDPN
Specific function: Not Yet Known. [C]
COG id: COG0705
COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30001; Mature: 29870
Theoretical pI: Translated: 11.41; Mature: 11.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSHRLRAAPRPGARSRSFTLDSSPETQPLPPSPPEPPREPILNLPRALTAYVALLAVIH CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHH LRVLLPPDIDYWTIEMFGFIPKRYDATLLSAPFPGGTGAKIWTFVTYSLLHANLSHIFFN HHHHCCCCCCEEEHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH VLWLLPFGSALARRFGAARFFLFMAVTAIGGALAHLLTHAHEIAPMIGASASVSGAMAAA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH IRFAFARGSFLSFRSGDADAAARVPAQPLLRALRDPRVIAFLAIWFGINIIFGVGSIAVG HHHHHHCCCEEEECCCCCCHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEC NEGASVAWQAHIGGFFAGLLLFSLFDPVPRRAPAVIDPN CCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure GSHRLRAAPRPGARSRSFTLDSSPETQPLPPSPPEPPREPILNLPRALTAYVALLAVIH CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHH LRVLLPPDIDYWTIEMFGFIPKRYDATLLSAPFPGGTGAKIWTFVTYSLLHANLSHIFFN HHHHCCCCCCEEEHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH VLWLLPFGSALARRFGAARFFLFMAVTAIGGALAHLLTHAHEIAPMIGASASVSGAMAAA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH IRFAFARGSFLSFRSGDADAAARVPAQPLLRALRDPRVIAFLAIWFGINIIFGVGSIAVG HHHHHHCCCEEEECCCCCCHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEC NEGASVAWQAHIGGFFAGLLLFSLFDPVPRRAPAVIDPN CCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA