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The map label for this gene is ydhC [H]

Identifier: 86749200

GI number: 86749200

Start: 2363052

End: 2363789

Strand: Direct

Name: ydhC [H]

Synonym: RPB_2079

Alternate gene names: 86749200

Gene position: 2363052-2363789 (Clockwise)

Preceding gene: 86749199

Following gene: 86749202

Centisome position: 44.32

GC content: 69.11

Gene sequence:

>738_bases
ATGGCAAAATCCCCACGAGCTCCTGATCGCGGCGCGGTCATCTACAAGGCGTTGTGGCACGCCATCATCGAGCAGGCGCT
GCAGCCCGGCGCCAAGCTTCCCGAAGACGCGATCGGCGAGAAATTCGGCGCCAGCCGCACCATCGTCCGCGCCGCGCTGG
GCCGGTTGGCCGCGGAAGGGCTGGTCGAACTGCGCCGCAATCGCGGCGCCGCGGTCGCGACCCCGAGCTGGAACGAGGCG
CGCGACATCTTCGACGTCCGGATCGGGCTGGAGCGGCTGGTGGTGGCGCGGCTCGCCGGCCGGCTGACGCGCGAGCAGAT
CAGGCAACTCGAGCAGCATGTCGACGCCGAGCAGCAGGCGAGGGGCAGCAATGTGCCGCTGTCGATCCGGCTCGCCACCG
CGTTCCATATCCGGCTCGCCGAGATGACCGGCAATCCGGTGCTGGCGCGCTATGTCAGCGAGGTCGCCTCGCGCTGCGGA
CTGATTCTCGCGCTGTACAGCCGGCCGCATTCGGCCGATTGCGCCGTCAGCGAGCATCGCGCCATCATCGCCGCATTGGC
GTCGGGCGACGCCACCCGCGCCACCGCGCTGATGGATCATCATCTCGACGCAGTGGCCGAGCGCGCGCTGATCGTGCCGC
ACGCCCCGGAAGCGCGCGACATCCAGGACATCCTGTCGCCCTATGCGAAAGAGGCCGCGTTGCCGAAGACCAGGAAAGCC
GGCGCGAAGAAGCGTTGA

Upstream 100 bases:

>100_bases
CTGATGATCGACGGCGCGCGCGTCATCGTCCTGTCGCCGCAAATTGCATTCGGGCCGGCGCTGTGGCAATCACGCGAGGT
ACTCCAGCGATTTCGATGCG

Downstream 100 bases:

>100_bases
GCCGCGCCAACAGCGTCATGACTTCGCTTCGCTCGCAATGCTTACGCCTCGATGCCGTGCCGGGTCAGCAACCGCTCGGC
GCTGTCGTTCCAGACGTCCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MAKSPRAPDRGAVIYKALWHAIIEQALQPGAKLPEDAIGEKFGASRTIVRAALGRLAAEGLVELRRNRGAAVATPSWNEA
RDIFDVRIGLERLVVARLAGRLTREQIRQLEQHVDAEQQARGSNVPLSIRLATAFHIRLAEMTGNPVLARYVSEVASRCG
LILALYSRPHSADCAVSEHRAIIAALASGDATRATALMDHHLDAVAERALIVPHAPEARDIQDILSPYAKEAALPKTRKA
GAKKR

Sequences:

>Translated_245_residues
MAKSPRAPDRGAVIYKALWHAIIEQALQPGAKLPEDAIGEKFGASRTIVRAALGRLAAEGLVELRRNRGAAVATPSWNEA
RDIFDVRIGLERLVVARLAGRLTREQIRQLEQHVDAEQQARGSNVPLSIRLATAFHIRLAEMTGNPVLARYVSEVASRCG
LILALYSRPHSADCAVSEHRAIIAALASGDATRATALMDHHLDAVAERALIVPHAPEARDIQDILSPYAKEAALPKTRKA
GAKKR
>Mature_244_residues
AKSPRAPDRGAVIYKALWHAIIEQALQPGAKLPEDAIGEKFGASRTIVRAALGRLAAEGLVELRRNRGAAVATPSWNEAR
DIFDVRIGLERLVVARLAGRLTREQIRQLEQHVDAEQQARGSNVPLSIRLATAFHIRLAEMTGNPVLARYVSEVASRCGL
ILALYSRPHSADCAVSEHRAIIAALASGDATRATALMDHHLDAVAERALIVPHAPEARDIQDILSPYAKEAALPKTRKAG
AKKR

Specific function: Repressor For The Uxurba Operon. [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790780, Length=227, Percent_Identity=29.9559471365639, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26580; Mature: 26449

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSPRAPDRGAVIYKALWHAIIEQALQPGAKLPEDAIGEKFGASRTIVRAALGRLAAEG
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
LVELRRNRGAAVATPSWNEARDIFDVRIGLERLVVARLAGRLTREQIRQLEQHVDAEQQA
HHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RGSNVPLSIRLATAFHIRLAEMTGNPVLARYVSEVASRCGLILALYSRPHSADCAVSEHR
CCCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
AIIAALASGDATRATALMDHHLDAVAERALIVPHAPEARDIQDILSPYAKEAALPKTRKA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHC
GAKKR
CCCCC
>Mature Secondary Structure 
AKSPRAPDRGAVIYKALWHAIIEQALQPGAKLPEDAIGEKFGASRTIVRAALGRLAAEG
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
LVELRRNRGAAVATPSWNEARDIFDVRIGLERLVVARLAGRLTREQIRQLEQHVDAEQQA
HHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RGSNVPLSIRLATAFHIRLAEMTGNPVLARYVSEVASRCGLILALYSRPHSADCAVSEHR
CCCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
AIIAALASGDATRATALMDHHLDAVAERALIVPHAPEARDIQDILSPYAKEAALPKTRKA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHC
GAKKR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]