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The map label for this gene is ydaM [H]

Identifier: 86748818

GI number: 86748818

Start: 1930094

End: 1932355

Strand: Direct

Name: ydaM [H]

Synonym: RPB_1695

Alternate gene names: 86748818

Gene position: 1930094-1932355 (Clockwise)

Preceding gene: 86748817

Following gene: 86748820

Centisome position: 36.2

GC content: 64.9

Gene sequence:

>2262_bases
ATGGCCAGCTATCTCGAAACCCAGCTCGATTTCATCTATTTCTTCTACGGTCTGGCATTCATCCTGCTGGGCGCGATGAG
TTTCGTCATCGCCCGGGTGCGGCCCAATCTTCGCGACGCCCGCCTGATCGGTCTGTTTGGTTGCTCGCACGGAGTGACCG
AATGGATGGACATGACCACGCTGATCTTCGGGGATTCGAACGAGTTCGCGATCTTCCGTTCAGCGATGATGACTCTGTCT
TTCATTCCGCTCGCCGAATTCGCGCGCAGGGGCGCGGTGAAACTCGGCGTCTGGATGCCTGGGGCCTGGATCTATCTGCC
CGTCCTGGGGGTGCTCGGAGTCGTCGGCCATGTCGACGGACTCGACGCCGCCAGGGCTCTGGCGCGCTACGCTCTGTGTG
CGCCGGGCGCGCTCGGCACGGGTCTCGTGATGCTGGCGCGGCGGCACAAAGTGCGCGAGGCGGGCTGGTCGATTGCGGTT
GGGCTCGCAATTGCGTTCTCGCTGTATGGTTTGGCTGCCGGCGTCGTCGTCGAGCCCGCCCCGTTCTGGCCGGCCACGAT
CGTCAACCAGGCGTGGTTCGTGGGAGCGACAGGCGTCCCGATCCAACTCGTCCGCGGTCTGATAGCTCTGGTGCTGGCGG
CTCTGATCTGGGGGGCCTGGGGTCGGCGGTTGATCCATGCCTTCGATTGCCCGCGCTACACCGCCTATCTGCAGCGACAG
TTCTACAGCGTCCTCGCCGCGATGGCCGCGATCCTGATCTTCGGCTGGGTCTTGACGAATATCCTCGGCGGCATTTTTCG
CACCGAAGTCGAGCGGGAGGCGGCGAGCACTGCCAGCTTGCTCGTCAACAGCATTGCCGACGCGGTCGGTACGGCCGACG
CAGTGGTCAGGGTGCTGGCCGCCTCGCCCGTGATCGCGCCACTGTTGGTGAGCCCGGAGCGAGCCAACCGCGACCTCGCC
CGCGCCGTCATCGATCTCCATGTCGAGACCGCCGGTGCGTCACGTGGTTTCATCCTCGATCGCAATGGCCACATCGTCGA
GACCACCGACCGGCACGATTTCGACGTGCTGGGTGCTGCCTCCCACAAGACCACGGTCTGGTTCCAAAGCTCGATCGGCG
GTCGGACGGGGCGCAATCTCCAGATCGATCCGTTCAGCGGCAGGCAATCCTATGTGAGCAGTCTTCCGCTTCACGACCCG
GCCGGATCAATCATCGGCGTAGTCGCACTCGAGGTCTTGCTCGAGAAGCTGGATGCCAGGCTGCGCGGTTTCGAGCAGGC
GTTCTTTCTGCTCGATGCGCGTGACGTCGTGGTCCTGACCAGTCGTCCCGCCCAGCTTTCGCGTACTCTGTGGCCTCGGC
CTGACATGGTGCCGGCGGCGCCGGAGCAGCCGTCTTCGACACCTCACTCCGAACCGCTCCGTCATGCCGTCACCGGCGGC
GAATGGACCCGCTTCGGCGGCCGCCGCTCTTATGTTCTGCGCAGCGTCGTGGAGGGAACGCCGTGGTCGGTGGTGCTGAC
ACTGCCGGTCGCCGGGATCACGGCCAGCCGCCTGCTCGGGATCATCATCACATTGCAACTGGCCCTCACGGCGTTGTTCT
ATTTCTTCGGCCGTGAGCGCGGCGTGCGCGACCGCGTGCAGCAATTGCTTCGGTCCGAGTTGCAGGAACGCGCTGCGGCG
TTAGCGCGTCAGGCGACCACGGATCCGCTGACCGGCCTCCACAACCGGCTCCGATTCAACGAAGGTCTGGCTCAGGAACT
GGCACGCGTGCGCCGCACCGGCCAGCCGCTTTCGCTGGTCATGTTCGATGTGGATCACTTCAAGGAGGTCAATGATCGCT
ACGGTCATCCGACCGGAGATCAGGTGCTGATCCGGCTATCCCAGACGGCGGCCGCCCAGCTGCGCCAGACCGACCTGTTG
GCCCGCTGGGGCGGCGAGGAATTCGCGATCCTGCTGGTCGACGCCGACCTCCACGCGGCCGTCGAAGTCGCAGAAAACCT
GCGGCGGCTGGTCGCCCGAACCCCGTTCGATCAGATCGGCTCCGTCACGGCGAGTTTCGGCGTCGCCGAATGCCGCCCGG
ATGAGTCCGCCGATAGTCTGCTGGAACGTGCCGACGCCGCGCTGTACCGCGCCAAATCCAACGGCCGCAATCGGGTGGAA
ATCGATGCGCCGGTCATCGAGGAGACTGTCGCGCTTTCACCAGCGGAGTCGGGCGACGAGCCACAGCAACGCTCCGACCA
TAAAAAGCCGACGCGCGCATGA

Upstream 100 bases:

>100_bases
GCAAAATTAACCGTCGGATGAGCTGCCACGCGTAGCTTGTTACCGACGGCGGCCGTCAATGCTCATAGGTGTCCGAGCGT
CAGGCCGAGCTCAGGGACCG

Downstream 100 bases:

>100_bases
CTGGTCATGGGCGCTGTTATTTACGATGCGCGGCAGTCAGGCGCTCAGGCGATCATCCGCTTCCGGAGGCGGCGCCTCGG
CCTTTGAGGTGTGCGGCAGA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 753; Mature: 752

Protein sequence:

>753_residues
MASYLETQLDFIYFFYGLAFILLGAMSFVIARVRPNLRDARLIGLFGCSHGVTEWMDMTTLIFGDSNEFAIFRSAMMTLS
FIPLAEFARRGAVKLGVWMPGAWIYLPVLGVLGVVGHVDGLDAARALARYALCAPGALGTGLVMLARRHKVREAGWSIAV
GLAIAFSLYGLAAGVVVEPAPFWPATIVNQAWFVGATGVPIQLVRGLIALVLAALIWGAWGRRLIHAFDCPRYTAYLQRQ
FYSVLAAMAAILIFGWVLTNILGGIFRTEVEREAASTASLLVNSIADAVGTADAVVRVLAASPVIAPLLVSPERANRDLA
RAVIDLHVETAGASRGFILDRNGHIVETTDRHDFDVLGAASHKTTVWFQSSIGGRTGRNLQIDPFSGRQSYVSSLPLHDP
AGSIIGVVALEVLLEKLDARLRGFEQAFFLLDARDVVVLTSRPAQLSRTLWPRPDMVPAAPEQPSSTPHSEPLRHAVTGG
EWTRFGGRRSYVLRSVVEGTPWSVVLTLPVAGITASRLLGIIITLQLALTALFYFFGRERGVRDRVQQLLRSELQERAAA
LARQATTDPLTGLHNRLRFNEGLAQELARVRRTGQPLSLVMFDVDHFKEVNDRYGHPTGDQVLIRLSQTAAAQLRQTDLL
ARWGGEEFAILLVDADLHAAVEVAENLRRLVARTPFDQIGSVTASFGVAECRPDESADSLLERADAALYRAKSNGRNRVE
IDAPVIEETVALSPAESGDEPQQRSDHKKPTRA

Sequences:

>Translated_753_residues
MASYLETQLDFIYFFYGLAFILLGAMSFVIARVRPNLRDARLIGLFGCSHGVTEWMDMTTLIFGDSNEFAIFRSAMMTLS
FIPLAEFARRGAVKLGVWMPGAWIYLPVLGVLGVVGHVDGLDAARALARYALCAPGALGTGLVMLARRHKVREAGWSIAV
GLAIAFSLYGLAAGVVVEPAPFWPATIVNQAWFVGATGVPIQLVRGLIALVLAALIWGAWGRRLIHAFDCPRYTAYLQRQ
FYSVLAAMAAILIFGWVLTNILGGIFRTEVEREAASTASLLVNSIADAVGTADAVVRVLAASPVIAPLLVSPERANRDLA
RAVIDLHVETAGASRGFILDRNGHIVETTDRHDFDVLGAASHKTTVWFQSSIGGRTGRNLQIDPFSGRQSYVSSLPLHDP
AGSIIGVVALEVLLEKLDARLRGFEQAFFLLDARDVVVLTSRPAQLSRTLWPRPDMVPAAPEQPSSTPHSEPLRHAVTGG
EWTRFGGRRSYVLRSVVEGTPWSVVLTLPVAGITASRLLGIIITLQLALTALFYFFGRERGVRDRVQQLLRSELQERAAA
LARQATTDPLTGLHNRLRFNEGLAQELARVRRTGQPLSLVMFDVDHFKEVNDRYGHPTGDQVLIRLSQTAAAQLRQTDLL
ARWGGEEFAILLVDADLHAAVEVAENLRRLVARTPFDQIGSVTASFGVAECRPDESADSLLERADAALYRAKSNGRNRVE
IDAPVIEETVALSPAESGDEPQQRSDHKKPTRA
>Mature_752_residues
ASYLETQLDFIYFFYGLAFILLGAMSFVIARVRPNLRDARLIGLFGCSHGVTEWMDMTTLIFGDSNEFAIFRSAMMTLSF
IPLAEFARRGAVKLGVWMPGAWIYLPVLGVLGVVGHVDGLDAARALARYALCAPGALGTGLVMLARRHKVREAGWSIAVG
LAIAFSLYGLAAGVVVEPAPFWPATIVNQAWFVGATGVPIQLVRGLIALVLAALIWGAWGRRLIHAFDCPRYTAYLQRQF
YSVLAAMAAILIFGWVLTNILGGIFRTEVEREAASTASLLVNSIADAVGTADAVVRVLAASPVIAPLLVSPERANRDLAR
AVIDLHVETAGASRGFILDRNGHIVETTDRHDFDVLGAASHKTTVWFQSSIGGRTGRNLQIDPFSGRQSYVSSLPLHDPA
GSIIGVVALEVLLEKLDARLRGFEQAFFLLDARDVVVLTSRPAQLSRTLWPRPDMVPAAPEQPSSTPHSEPLRHAVTGGE
WTRFGGRRSYVLRSVVEGTPWSVVLTLPVAGITASRLLGIIITLQLALTALFYFFGRERGVRDRVQQLLRSELQERAAAL
ARQATTDPLTGLHNRLRFNEGLAQELARVRRTGQPLSLVMFDVDHFKEVNDRYGHPTGDQVLIRLSQTAAAQLRQTDLLA
RWGGEEFAILLVDADLHAAVEVAENLRRLVARTPFDQIGSVTASFGVAECRPDESADSLLERADAALYRAKSNGRNRVEI
DAPVIEETVALSPAESGDEPQQRSDHKKPTRA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=42.4418604651163, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI145693134, Length=185, Percent_Identity=36.7567567567568, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=40.5063291139241, Blast_Score=109, Evalue=7e-25,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=35.0282485875706, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87082007, Length=206, Percent_Identity=36.8932038834951, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1788381, Length=168, Percent_Identity=36.3095238095238, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=33.1325301204819, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=35.9756097560976, Blast_Score=88, Evalue=3e-18,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=30.188679245283, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1788956, Length=167, Percent_Identity=36.5269461077844, Blast_Score=84, Evalue=5e-17,
Organism=Escherichia coli, GI87081977, Length=176, Percent_Identity=30.6818181818182, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI1787541, Length=183, Percent_Identity=34.4262295081967, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1788085, Length=182, Percent_Identity=30.2197802197802, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI1787056, Length=167, Percent_Identity=30.5389221556886, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 82183; Mature: 82051

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASYLETQLDFIYFFYGLAFILLGAMSFVIARVRPNLRDARLIGLFGCSHGVTEWMDMTT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHE
LIFGDSNEFAIFRSAMMTLSFIPLAEFARRGAVKLGVWMPGAWIYLPVLGVLGVVGHVDG
EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC
LDAARALARYALCAPGALGTGLVMLARRHKVREAGWSIAVGLAIAFSLYGLAAGVVVEPA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEECCC
PFWPATIVNQAWFVGATGVPIQLVRGLIALVLAALIWGAWGRRLIHAFDCPRYTAYLQRQ
CCCHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FYSVLAAMAAILIFGWVLTNILGGIFRTEVEREAASTASLLVNSIADAVGTADAVVRVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASPVIAPLLVSPERANRDLARAVIDLHVETAGASRGFILDRNGHIVETTDRHDFDVLGAA
HCCHHHHHEECCHHCCHHHHHHHHHHHEEECCCCCCEEECCCCCEEECCCCCCCCEEECC
SHKTTVWFQSSIGGRTGRNLQIDPFSGRQSYVSSLPLHDPAGSIIGVVALEVLLEKLDAR
CCCEEEEEECCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
LRGFEQAFFLLDARDVVVLTSRPAQLSRTLWPRPDMVPAAPEQPSSTPHSEPLRHAVTGG
HHHHHHHHHEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
EWTRFGGRRSYVLRSVVEGTPWSVVLTLPVAGITASRLLGIIITLQLALTALFYFFGRER
CCHHCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GVRDRVQQLLRSELQERAAALARQATTDPLTGLHNRLRFNEGLAQELARVRRTGQPLSLV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEE
MFDVDHFKEVNDRYGHPTGDQVLIRLSQTAAAQLRQTDLLARWGGEEFAILLVDADLHAA
EECHHHHHHHHHHCCCCCCCHHEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHH
VEVAENLRRLVARTPFDQIGSVTASFGVAECRPDESADSLLERADAALYRAKSNGRNRVE
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
IDAPVIEETVALSPAESGDEPQQRSDHKKPTRA
ECCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
ASYLETQLDFIYFFYGLAFILLGAMSFVIARVRPNLRDARLIGLFGCSHGVTEWMDMTT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHE
LIFGDSNEFAIFRSAMMTLSFIPLAEFARRGAVKLGVWMPGAWIYLPVLGVLGVVGHVDG
EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC
LDAARALARYALCAPGALGTGLVMLARRHKVREAGWSIAVGLAIAFSLYGLAAGVVVEPA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEECCC
PFWPATIVNQAWFVGATGVPIQLVRGLIALVLAALIWGAWGRRLIHAFDCPRYTAYLQRQ
CCCHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
FYSVLAAMAAILIFGWVLTNILGGIFRTEVEREAASTASLLVNSIADAVGTADAVVRVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASPVIAPLLVSPERANRDLARAVIDLHVETAGASRGFILDRNGHIVETTDRHDFDVLGAA
HCCHHHHHEECCHHCCHHHHHHHHHHHEEECCCCCCEEECCCCCEEECCCCCCCCEEECC
SHKTTVWFQSSIGGRTGRNLQIDPFSGRQSYVSSLPLHDPAGSIIGVVALEVLLEKLDAR
CCCEEEEEECCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
LRGFEQAFFLLDARDVVVLTSRPAQLSRTLWPRPDMVPAAPEQPSSTPHSEPLRHAVTGG
HHHHHHHHHEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
EWTRFGGRRSYVLRSVVEGTPWSVVLTLPVAGITASRLLGIIITLQLALTALFYFFGRER
CCHHCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GVRDRVQQLLRSELQERAAALARQATTDPLTGLHNRLRFNEGLAQELARVRRTGQPLSLV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEE
MFDVDHFKEVNDRYGHPTGDQVLIRLSQTAAAQLRQTDLLARWGGEEFAILLVDADLHAA
EECHHHHHHHHHHCCCCCCCHHEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHH
VEVAENLRRLVARTPFDQIGSVTASFGVAECRPDESADSLLERADAALYRAKSNGRNRVE
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
IDAPVIEETVALSPAESGDEPQQRSDHKKPTRA
ECCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]