| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is yxjG [H]
Identifier: 86748709
GI number: 86748709
Start: 1783538
End: 1784656
Strand: Direct
Name: yxjG [H]
Synonym: RPB_1584
Alternate gene names: 86748709
Gene position: 1783538-1784656 (Clockwise)
Preceding gene: 86748708
Following gene: 86748711
Centisome position: 33.45
GC content: 62.73
Gene sequence:
>1119_bases ATGCAAAGAACCAAAGCCCCGTTCCGAGCCGACGAGGTCGGCAGCCTGTTGCGGCCGCAGAGCATCAAGGAGGCGCGCGC CAGGCTGGAGAAGGGCGAAATCTCCGCCGCCGATCTGAAGAAGATCGAGGACATGGAGATCGAGAAGATCGTCCACAAGC AGTCGGCGATCGGCCTCAAGCTCGCCACTGACGGCGAATTCCGCCGCTCCTGGTGGCACTTCGATTTCCTGGCCAAGCTG ACCGGCTGCGAACTCTACCATCCCGACACCGGCATCCAGTTCGCCGGCGTGCAGACCCGCAATGATTCGATCCGGGTGAT CGGCAAGCTCGACTTTCCCGACGACCATCCGATGCTCGAGCATTTCCGCTTCCTGAAGAAGCACGCCGACGTCGCCCATG TCACCGCCAAGATGACGATCCCGTCGCCGGCGGTGCTGCATTTCCGCGGCGGCCGCAAGGCGATCTCCAAGGAGGTCTAT CCCGATCTCGACGGCTTCTTCGAGGATCTGGCCAAGACCTACCGCAAGGCGGTGAAGGCGTTCTACGACGCCGGCTGCCG CTATCTGCAGTTCGACGACACCGTGTGGGCTTATCTGTGCTCGCCGGACGAACTGGAGAAGGCCCGCGCCCGCGGCGACG ATCCGGACAATCTGCAGCAGATCTACGCCCGTGTGATCAACTACGCGATCGCCGAACGCCCGGCCGATATGGTGATCACT ACCCACGTCTGCCGCGGCAATTTCCGCTCGACCTGGATCTCCTCCGGCGGCTACGAGCCGGTGGCCGAGACGCTGCTCGC CGGCATCAATTACGACGGCTATTTCCTGGAATACGATTCCGAACGCGCCGGCGGCTTCGAGCCGCTGCGGTTTTTGCCGA AGGGCAACAAGGTCGTGGTGGTCGGCGTCATCACCTCGAAATTCGGCGAGCTGGAAAACAAGGACGACATCAAGCGTCGT CTGGAGGAAGCCGCCAAATTCGCGCCGCTGGAGCAGCTCGCACTGTCGCCGCAATGCGGCTTCGCCTCGACCGAGGAAGG CAACATCCTCAGCGAGCAGGAGCAGTGGGACAAGCTGCAGCTTGCGGTCGAAGTGTCGCGCGAGGTCTGGGGCAAGTAG
Upstream 100 bases:
>100_bases CCAGCGCGGCGCTGAAGGACGACCCCGCCACGCTGGAACGCTATCTCGGCGTCTCTGGCGCCGCCGGTACCAAACACTGA ACTTGTTAGGGAGTGAAACG
Downstream 100 bases:
>100_bases GCCGCACCCTCGTCATTGCGAGGTGCGCAGCGACGAAGCAATCCAGGATCTTACGCTCGGCGCACTGGATTGCTTCGCTT CGCTCGCAATGACGGCGATT
Product: 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 372; Mature: 372
Protein sequence:
>372_residues MQRTKAPFRADEVGSLLRPQSIKEARARLEKGEISAADLKKIEDMEIEKIVHKQSAIGLKLATDGEFRRSWWHFDFLAKL TGCELYHPDTGIQFAGVQTRNDSIRVIGKLDFPDDHPMLEHFRFLKKHADVAHVTAKMTIPSPAVLHFRGGRKAISKEVY PDLDGFFEDLAKTYRKAVKAFYDAGCRYLQFDDTVWAYLCSPDELEKARARGDDPDNLQQIYARVINYAIAERPADMVIT THVCRGNFRSTWISSGGYEPVAETLLAGINYDGYFLEYDSERAGGFEPLRFLPKGNKVVVVGVITSKFGELENKDDIKRR LEEAAKFAPLEQLALSPQCGFASTEEGNILSEQEQWDKLQLAVEVSREVWGK
Sequences:
>Translated_372_residues MQRTKAPFRADEVGSLLRPQSIKEARARLEKGEISAADLKKIEDMEIEKIVHKQSAIGLKLATDGEFRRSWWHFDFLAKL TGCELYHPDTGIQFAGVQTRNDSIRVIGKLDFPDDHPMLEHFRFLKKHADVAHVTAKMTIPSPAVLHFRGGRKAISKEVY PDLDGFFEDLAKTYRKAVKAFYDAGCRYLQFDDTVWAYLCSPDELEKARARGDDPDNLQQIYARVINYAIAERPADMVIT THVCRGNFRSTWISSGGYEPVAETLLAGINYDGYFLEYDSERAGGFEPLRFLPKGNKVVVVGVITSKFGELENKDDIKRR LEEAAKFAPLEQLALSPQCGFASTEEGNILSEQEQWDKLQLAVEVSREVWGK >Mature_372_residues MQRTKAPFRADEVGSLLRPQSIKEARARLEKGEISAADLKKIEDMEIEKIVHKQSAIGLKLATDGEFRRSWWHFDFLAKL TGCELYHPDTGIQFAGVQTRNDSIRVIGKLDFPDDHPMLEHFRFLKKHADVAHVTAKMTIPSPAVLHFRGGRKAISKEVY PDLDGFFEDLAKTYRKAVKAFYDAGCRYLQFDDTVWAYLCSPDELEKARARGDDPDNLQQIYARVINYAIAERPADMVIT THVCRGNFRSTWISSGGYEPVAETLLAGINYDGYFLEYDSERAGGFEPLRFLPKGNKVVVVGVITSKFGELENKDDIKRR LEEAAKFAPLEQLALSPQCGFASTEEGNILSEQEQWDKLQLAVEVSREVWGK
Specific function: Unknown
COG id: COG0620
COG function: function code E; Methionine synthase II (cobalamin-independent)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yxjH [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002629 [H]
Pfam domain/function: PF01717 Meth_synt_2 [H]
EC number: NA
Molecular weight: Translated: 42171; Mature: 42171
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRTKAPFRADEVGSLLRPQSIKEARARLEKGEISAADLKKIEDMEIEKIVHKQSAIGLK CCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCEEE LATDGEFRRSWWHFDFLAKLTGCELYHPDTGIQFAGVQTRNDSIRVIGKLDFPDDHPMLE EECCCHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHH HFRFLKKHADVAHVTAKMTIPSPAVLHFRGGRKAISKEVYPDLDGFFEDLAKTYRKAVKA HHHHHHHCCCHHEEEEEEECCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH FYDAGCRYLQFDDTVWAYLCSPDELEKARARGDDPDNLQQIYARVINYAIAERPADMVIT HHHCCCEEEEECCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE THVCRGNFRSTWISSGGYEPVAETLLAGINYDGYFLEYDSERAGGFEPLRFLPKGNKVVV EHHHCCCCHHHHCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHCCCCCCEEEE VGVITSKFGELENKDDIKRRLEEAAKFAPLEQLALSPQCGFASTEEGNILSEQEQWDKLQ EEEHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH LAVEVSREVWGK HHHHHHHHHCCC >Mature Secondary Structure MQRTKAPFRADEVGSLLRPQSIKEARARLEKGEISAADLKKIEDMEIEKIVHKQSAIGLK CCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCEEE LATDGEFRRSWWHFDFLAKLTGCELYHPDTGIQFAGVQTRNDSIRVIGKLDFPDDHPMLE EECCCHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHH HFRFLKKHADVAHVTAKMTIPSPAVLHFRGGRKAISKEVYPDLDGFFEDLAKTYRKAVKA HHHHHHHCCCHHEEEEEEECCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH FYDAGCRYLQFDDTVWAYLCSPDELEKARARGDDPDNLQQIYARVINYAIAERPADMVIT HHHCCCEEEEECCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE THVCRGNFRSTWISSGGYEPVAETLLAGINYDGYFLEYDSERAGGFEPLRFLPKGNKVVV EHHHCCCCHHHHCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHCCCCCCEEEE VGVITSKFGELENKDDIKRRLEEAAKFAPLEQLALSPQCGFASTEEGNILSEQEQWDKLQ EEEHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH LAVEVSREVWGK HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377; 10568751 [H]