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The map label for this gene is greA [H]

Identifier: 86748640

GI number: 86748640

Start: 1707157

End: 1707681

Strand: Reverse

Name: greA [H]

Synonym: RPB_1515

Alternate gene names: 86748640

Gene position: 1707681-1707157 (Counterclockwise)

Preceding gene: 86748641

Following gene: 86748639

Centisome position: 32.03

GC content: 64.0

Gene sequence:

>525_bases
ATGCGCAGACCAAGGCGCCCGCGACGAATGCTGAAGGATAAAGGCAAGATGGTGGAAAAGGTACCGATGACGGCGGGCGG
CTACGCCGCGCTTTCGGACGAATTGAAGAAGCGCCAGTCGGTGGATCGTCCGCGCATCATCGAGCATATCGCCGAGGCGC
GCTCGCATGGCGACCTGTCCGAAAACGCGGAGTATCACGCCGCCAAGGAAGAGCAGTCGCACAACGAGGGCCGCATCGCC
GAGCTCGAGGACAAGCTGGCGCGCGCCGACATCATCGACATCAGCAAGCTCAGCGGCGACACCATCAAGTTCGGCGCCAC
CGTGACGCTGATCGACGAGGACACCGAGAAGAAGGCGGTGTGGCAGATCGTCGGCGAAAACGAAGCGGACGCCAAGAAGG
GCAAGATCTCGATCACCTCGCCGCTTGCCCGCGCGCTGATCGGCAAGACCAAGGGCACCTCGGTCGAGGTCGTCGCCCCC
GGCGGCGCCAAGGCCTACGAGATCGCCAAGGTCGAGTGGCGCTGA

Upstream 100 bases:

>100_bases
TTTATCCGGCGTTTCGCGGCGACCCAGGGTACGGCTGGAAGTATTCTCGGGGCACCGCTTTGGCGGATCGCTCCCCTTAT
GTAAGCTGACGACTTCGCGG

Downstream 100 bases:

>100_bases
CCGCGCTGTACGGCAGCAACAGTCGTGCTGAAAGGCCGCCGCGGGCGGCCTTTTTGCTGTTCTGAGCAGGCTTCCGGCGC
GGATCCGGACTGATCACGCG

Product: transcription elongation factor GreA

Products: NA

Alternate protein names: Transcript cleavage factor greA [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MRRPRRPRRMLKDKGKMVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEGRIA
ELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGENEADAKKGKISITSPLARALIGKTKGTSVEVVAP
GGAKAYEIAKVEWR

Sequences:

>Translated_174_residues
MRRPRRPRRMLKDKGKMVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEGRIA
ELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGENEADAKKGKISITSPLARALIGKTKGTSVEVVAP
GGAKAYEIAKVEWR
>Mature_174_residues
MRRPRRPRRMLKDKGKMVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEGRIA
ELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGENEADAKKGKISITSPLARALIGKTKGTSVEVVAP
GGAKAYEIAKVEWR

Specific function: Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the greA/greB family [H]

Homologues:

Organism=Escherichia coli, GI87082225, Length=157, Percent_Identity=47.7707006369427, Blast_Score=150, Evalue=4e-38,
Organism=Escherichia coli, GI87082261, Length=155, Percent_Identity=33.5483870967742, Blast_Score=73, Evalue=9e-15,

Paralogues:

None

Copy number: 259 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018151
- InterPro:   IPR006359
- InterPro:   IPR001437
- InterPro:   IPR022691 [H]

Pfam domain/function: PF01272 GreA_GreB; PF03449 GreA_GreB_N [H]

EC number: NA

Molecular weight: Translated: 19243; Mature: 19243

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS00829 GREAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPRRPRRMLKDKGKMVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHIAEARSHGDLS
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
ENAEYHAAKEEQSHNEGRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAV
CCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEEEECCEEEEEECCCCHHHH
WQIVGENEADAKKGKISITSPLARALIGKTKGTSVEVVAPGGAKAYEIAKVEWR
HHEECCCCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEECC
>Mature Secondary Structure
MRRPRRPRRMLKDKGKMVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHIAEARSHGDLS
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
ENAEYHAAKEEQSHNEGRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAV
CCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEEEECCEEEEEECCCCHHHH
WQIVGENEADAKKGKISITSPLARALIGKTKGTSVEVVAPGGAKAYEIAKVEWR
HHEECCCCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA