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The map label for this gene is ylmB [H]

Identifier: 86748614

GI number: 86748614

Start: 1678627

End: 1679925

Strand: Reverse

Name: ylmB [H]

Synonym: RPB_1489

Alternate gene names: 86748614

Gene position: 1679925-1678627 (Counterclockwise)

Preceding gene: 86748615

Following gene: 86748613

Centisome position: 31.51

GC content: 65.82

Gene sequence:

>1299_bases
ATGAACATGATACTGCCTGCTGTCACCGCCGACATCGAAGCCGATGTGCTGTCGCGGATCACCGAGGAACGCTGGCTGAC
GCTGGCCAGTGAACTGATCACCACCGGCCAGCCGCGCGCCACCAACCCACTCGATCCCGATTTGCCGGCCGCCGAGGAGG
AAGCGATCGCGATGCTGATCGCCGGCAAGCTCGAAGCGCTCGGCATGGCGGTGACCAAGCATGCGGCGCAGCCGCACCGA
CCGAACATTCTGGGCGTGCTGCCAGGCCGCAAGGATGCGCCGTCGCTGATCCTCAACGATCACCTCGACACCTATCCGGC
GGTGGAGCCGGAGAAGTGGCACATGACCGGCTTCGATCCGTTCAAGCCGACCCGGCATGGCGACCTGCTCTATGCCCGCG
GCACCTCCGACACCCGCGGCAACCTCGCCGCCTCACTGCTCGCCGTCCAGGCGCTGATCGAGGCCGGCGTCCGCTTCGAT
GGCACGCTGATGTGCTGCTACACGGTCGACGAGGAGCGCAACGGCACGGAGGGCTCGATCTATATGCTGCAGCAGGTCGG
CCTCACCGCCGACTATTCGATCACCGCGGAGCCGACCGCCTGGGGCGATGTCTCCGGCGACTGGGGCATGAACCTGTCCG
TCGCAAATTCGGGTCACTGCCTGATCGAAATCGTCGTTCAGGGCATCAAGTCGCATATCTGGCGGCCCGACATCAGCGTC
AACGCCATCATGGCGGCCGGCAAATTGCTGCCGCAACTGCAGGCGATGGCGTTCACGCATGTGCCGGCGGCGTTCATGGG
CCACACCCCGCCGTGCTGTTCGGTGGTGCGAATCCGCGGCGGGCTGCCCGGCGAGATGCAGTTTTCGCCGGACGCCTGCA
CCATCACGGTGGCGGCGGTCGGGCTGGTACCGGGCATGACGCTGGACAGTGTGATCGCCGACATCGAGCAGACCATTCGC
CAGACCTTTGCCTCGGTGAACGACGTCACCGCAACCGTCCGGCAGGTGCCGGGCTCGCTGTTCGTCAACGGCACCGAGCC
GGTGCCGGTCGATCAGGAGCCCTGCGTGTCGCTGCGCGCGGTGTATCGCGAGTTGATGGGCGCCGAGCCCGGCGTCAACC
GCAAGAACGCCTTCAACGACACCATCCGGTTTCGCGAGGCCGGCATCAATGCGGTGACCTTCGGCCCGGGCGAGGACGGC
TGGGCCGTCGACAACGAAAACATCTCGATCACCAAGGCGGTGATGGCGACGCGGATCTACGCGCTCTCCATCATGCGGAT
CCTGGGAGTGCGTGCATGA

Upstream 100 bases:

>100_bases
CTATTCGCCCAACGCAGTTTTTCGGTGATTGGCACGCGGAGTGCAATGAGGAGTCGGTTCCTCATCCCGCGCCGATCGCG
CTGCAACCGAATGAACTCGC

Downstream 100 bases:

>100_bases
GCGCCGACAGCGGACTGATCGCAGCCCCGGCCGAGCCCGCCCGCGACAGCGGGCTGCGGCTGAGATGGCCGCGGCCGTCG
CGATCCTTCCTGCTGTCGTC

Product: peptidase M20

Products: NA

Alternate protein names: Amidohydrolase; Formylaminopyrimidine deformylase [H]

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MNMILPAVTADIEADVLSRITEERWLTLASELITTGQPRATNPLDPDLPAAEEEAIAMLIAGKLEALGMAVTKHAAQPHR
PNILGVLPGRKDAPSLILNDHLDTYPAVEPEKWHMTGFDPFKPTRHGDLLYARGTSDTRGNLAASLLAVQALIEAGVRFD
GTLMCCYTVDEERNGTEGSIYMLQQVGLTADYSITAEPTAWGDVSGDWGMNLSVANSGHCLIEIVVQGIKSHIWRPDISV
NAIMAAGKLLPQLQAMAFTHVPAAFMGHTPPCCSVVRIRGGLPGEMQFSPDACTITVAAVGLVPGMTLDSVIADIEQTIR
QTFASVNDVTATVRQVPGSLFVNGTEPVPVDQEPCVSLRAVYRELMGAEPGVNRKNAFNDTIRFREAGINAVTFGPGEDG
WAVDNENISITKAVMATRIYALSIMRILGVRA

Sequences:

>Translated_432_residues
MNMILPAVTADIEADVLSRITEERWLTLASELITTGQPRATNPLDPDLPAAEEEAIAMLIAGKLEALGMAVTKHAAQPHR
PNILGVLPGRKDAPSLILNDHLDTYPAVEPEKWHMTGFDPFKPTRHGDLLYARGTSDTRGNLAASLLAVQALIEAGVRFD
GTLMCCYTVDEERNGTEGSIYMLQQVGLTADYSITAEPTAWGDVSGDWGMNLSVANSGHCLIEIVVQGIKSHIWRPDISV
NAIMAAGKLLPQLQAMAFTHVPAAFMGHTPPCCSVVRIRGGLPGEMQFSPDACTITVAAVGLVPGMTLDSVIADIEQTIR
QTFASVNDVTATVRQVPGSLFVNGTEPVPVDQEPCVSLRAVYRELMGAEPGVNRKNAFNDTIRFREAGINAVTFGPGEDG
WAVDNENISITKAVMATRIYALSIMRILGVRA
>Mature_432_residues
MNMILPAVTADIEADVLSRITEERWLTLASELITTGQPRATNPLDPDLPAAEEEAIAMLIAGKLEALGMAVTKHAAQPHR
PNILGVLPGRKDAPSLILNDHLDTYPAVEPEKWHMTGFDPFKPTRHGDLLYARGTSDTRGNLAASLLAVQALIEAGVRFD
GTLMCCYTVDEERNGTEGSIYMLQQVGLTADYSITAEPTAWGDVSGDWGMNLSVANSGHCLIEIVVQGIKSHIWRPDISV
NAIMAAGKLLPQLQAMAFTHVPAAFMGHTPPCCSVVRIRGGLPGEMQFSPDACTITVAAVGLVPGMTLDSVIADIEQTIR
QTFASVNDVTATVRQVPGSLFVNGTEPVPVDQEPCVSLRAVYRELMGAEPGVNRKNAFNDTIRFREAGINAVTFGPGEDG
WAVDNENISITKAVMATRIYALSIMRILGVRA

Specific function: Catalyzed the deformylation of formylaminopyrimidine to give aminopyrimidine [H]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1789236, Length=381, Percent_Identity=23.8845144356955, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788816, Length=216, Percent_Identity=25.462962962963, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010182
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 46408; Mature: 46408

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMILPAVTADIEADVLSRITEERWLTLASELITTGQPRATNPLDPDLPAAEEEAIAMLI
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEHHH
AGKLEALGMAVTKHAAQPHRPNILGVLPGRKDAPSLILNDHLDTYPAVEPEKWHMTGFDP
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCC
FKPTRHGDLLYARGTSDTRGNLAASLLAVQALIEAGVRFDGTLMCCYTVDEERNGTEGSI
CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEE
YMLQQVGLTADYSITAEPTAWGDVSGDWGMNLSVANSGHCLIEIVVQGIKSHIWRPDISV
EEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCH
NAIMAAGKLLPQLQAMAFTHVPAAFMGHTPPCCSVVRIRGGLPGEMQFSPDACTITVAAV
HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHEECCCCCCCEEECCCCEEEEEEEH
GLVPGMTLDSVIADIEQTIRQTFASVNDVTATVRQVPGSLFVNGTEPVPVDQEPCVSLRA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHH
VYRELMGAEPGVNRKNAFNDTIRFREAGINAVTFGPGEDGWAVDNENISITKAVMATRIY
HHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCEECCCCCCHHHHHHHHHHH
ALSIMRILGVRA
HHHHHHHHCCCC
>Mature Secondary Structure
MNMILPAVTADIEADVLSRITEERWLTLASELITTGQPRATNPLDPDLPAAEEEAIAMLI
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEHHH
AGKLEALGMAVTKHAAQPHRPNILGVLPGRKDAPSLILNDHLDTYPAVEPEKWHMTGFDP
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCC
FKPTRHGDLLYARGTSDTRGNLAASLLAVQALIEAGVRFDGTLMCCYTVDEERNGTEGSI
CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEE
YMLQQVGLTADYSITAEPTAWGDVSGDWGMNLSVANSGHCLIEIVVQGIKSHIWRPDISV
EEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCH
NAIMAAGKLLPQLQAMAFTHVPAAFMGHTPPCCSVVRIRGGLPGEMQFSPDACTITVAAV
HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHEECCCCCCCEEECCCCEEEEEEEH
GLVPGMTLDSVIADIEQTIRQTFASVNDVTATVRQVPGSLFVNGTEPVPVDQEPCVSLRA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHH
VYRELMGAEPGVNRKNAFNDTIRFREAGINAVTFGPGEDGWAVDNENISITKAVMATRIY
HHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCEECCCCCCHHHHHHHHHHH
ALSIMRILGVRA
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]