Click here to switch to the map view.

The map label for this gene is 86748563

Identifier: 86748563

GI number: 86748563

Start: 1626988

End: 1628112

Strand: Reverse

Name: 86748563

Synonym: RPB_1438

Alternate gene names: NA

Gene position: 1628112-1626988 (Counterclockwise)

Preceding gene: 86748564

Following gene: 86748555

Centisome position: 30.54

GC content: 61.51

Gene sequence:

>1125_bases
GTGCCCGCCAATCAACGCAACATCAGTTTCGCCACGTTCAATCTCTACAATCTGCAGCTTCCCGATCAGCCGATGTACCC
GAAAAGCCGGCCGTACACGCAAGAACAATACGACGCCAAGATCGCCTGGATCGGGTCGATGGTCCAACGCCTGGATGCTG
ACGTGATCGCCTTCCAGGAACTGTGGGATCGCCGGGCCCTTGAGGCCGCCTTCCAGGCCGCAGAGCTGAGCGATCGCTAC
GCCTTCGCCTATATCAAGGAGGGAGCCTGGGACGGCATCGCGGTGGCCGCCGCGGTGCGCAAGCCCTGGGAGATCGCCGG
CGTCAAACGGCACAAAGCCTTTCCGCAGGGCTTCCGGCTGAAGAAGCGCAAGCACACCATGACGGCGCTTAGGGCCAATC
CGCCGCAGGCCGACGAGAGTATCGTGCCGGACGAGAACGACGAGTTCGGGCCCAGCCACGAAGACGAACGTATCGACGTT
TCCATCAGCGAGTTTTCCCGCTCGCCGCTCCAGGTCACGGTGACGCACGGCACCGCGAGGAGCCCTTCCGTACCGCCCAT
TCAGGTGTTCTGCACTCACCTGAAGTCGAAACTGTCGACCCCTCTCGACGACGAAGAGTACAAAGACCCTGACATCCGTC
CGCACAAGGATGCGCTGGGCGGCGCGTTGTCGGCGATCCGGCGCACCGCCGAGGCCGCAGCGCTGCGCATCATCCTGAAC
GACACTATGCGCGACACGGACGATCCGACGATCGTCCTCGGCGACGTCAACGATGGCCAGTTCTCGAATGTTCTGTCCAT
CCTGTCGGGCCAGCCGACGTTTCGTGTCGTCGCTGGCAGCAGGGCGGGCGCGCGCAGTGACGCCGGGCTCTATACCGGCG
TGACGCTGCAGCAACTTCGTAGCCTTGGTGACGTGTACTACACCCATGAATTCAAGAACGTGCGCGAGGTAATCGACCAC
GCTCTGGTGTCGGAACAGTTCTACGACTATTCCGACAAGAGGCTATGGACGTTTCGCGAGATGCAATTCTTCAACGATCA
CGTCGCCCATGCCTCGCATGCCGAATCGGATCACGGGCAGGTTCGTATTTGGTTTCAATGGGTGCCCGCGGATCGACGCG
ACTAG

Upstream 100 bases:

>100_bases
CGCGACCCTTAGTAATTTCAGCGCCATAATTTTATCACTGCGTAGTTTCACCGCAGATCCCACCATGGTTTTTGTTCTTT
GATTTCAGCGAGGTCTCACT

Downstream 100 bases:

>100_bases
ACCGGCGTCGAGCTGGATTGCTTCGTCGTGGAGCCTATACTCGGACGACGCGAAGCGCCGATCCGGGTGCTCCTCGCAAC
GACGATGTCCCAAATGCAAA

Product: endonuclease/exonuclease/phosphatase

Products: NA

Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family; Extracellular Nuclease

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MPANQRNISFATFNLYNLQLPDQPMYPKSRPYTQEQYDAKIAWIGSMVQRLDADVIAFQELWDRRALEAAFQAAELSDRY
AFAYIKEGAWDGIAVAAAVRKPWEIAGVKRHKAFPQGFRLKKRKHTMTALRANPPQADESIVPDENDEFGPSHEDERIDV
SISEFSRSPLQVTVTHGTARSPSVPPIQVFCTHLKSKLSTPLDDEEYKDPDIRPHKDALGGALSAIRRTAEAAALRIILN
DTMRDTDDPTIVLGDVNDGQFSNVLSILSGQPTFRVVAGSRAGARSDAGLYTGVTLQQLRSLGDVYYTHEFKNVREVIDH
ALVSEQFYDYSDKRLWTFREMQFFNDHVAHASHAESDHGQVRIWFQWVPADRRD

Sequences:

>Translated_374_residues
MPANQRNISFATFNLYNLQLPDQPMYPKSRPYTQEQYDAKIAWIGSMVQRLDADVIAFQELWDRRALEAAFQAAELSDRY
AFAYIKEGAWDGIAVAAAVRKPWEIAGVKRHKAFPQGFRLKKRKHTMTALRANPPQADESIVPDENDEFGPSHEDERIDV
SISEFSRSPLQVTVTHGTARSPSVPPIQVFCTHLKSKLSTPLDDEEYKDPDIRPHKDALGGALSAIRRTAEAAALRIILN
DTMRDTDDPTIVLGDVNDGQFSNVLSILSGQPTFRVVAGSRAGARSDAGLYTGVTLQQLRSLGDVYYTHEFKNVREVIDH
ALVSEQFYDYSDKRLWTFREMQFFNDHVAHASHAESDHGQVRIWFQWVPADRRD
>Mature_373_residues
PANQRNISFATFNLYNLQLPDQPMYPKSRPYTQEQYDAKIAWIGSMVQRLDADVIAFQELWDRRALEAAFQAAELSDRYA
FAYIKEGAWDGIAVAAAVRKPWEIAGVKRHKAFPQGFRLKKRKHTMTALRANPPQADESIVPDENDEFGPSHEDERIDVS
ISEFSRSPLQVTVTHGTARSPSVPPIQVFCTHLKSKLSTPLDDEEYKDPDIRPHKDALGGALSAIRRTAEAAALRIILND
TMRDTDDPTIVLGDVNDGQFSNVLSILSGQPTFRVVAGSRAGARSDAGLYTGVTLQQLRSLGDVYYTHEFKNVREVIDHA
LVSEQFYDYSDKRLWTFREMQFFNDHVAHASHAESDHGQVRIWFQWVPADRRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42378; Mature: 42247

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPANQRNISFATFNLYNLQLPDQPMYPKSRPYTQEQYDAKIAWIGSMVQRLDADVIAFQE
CCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCHHHHHHHH
LWDRRALEAAFQAAELSDRYAFAYIKEGAWDGIAVAAAVRKPWEIAGVKRHKAFPQGFRL
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCHHHCCCHHHHCCCCCHHH
KKRKHTMTALRANPPQADESIVPDENDEFGPSHEDERIDVSISEFSRSPLQVTVTHGTAR
HHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCEEEEEECCCCC
SPSVPPIQVFCTHLKSKLSTPLDDEEYKDPDIRPHKDALGGALSAIRRTAEAAALRIILN
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEC
DTMRDTDDPTIVLGDVNDGQFSNVLSILSGQPTFRVVAGSRAGARSDAGLYTGVTLQQLR
CCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEECCHHHHHHH
SLGDVYYTHEFKNVREVIDHALVSEQFYDYSDKRLWTFREMQFFNDHVAHASHAESDHGQ
HHHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCE
VRIWFQWVPADRRD
EEEEEEECCCCCCC
>Mature Secondary Structure 
PANQRNISFATFNLYNLQLPDQPMYPKSRPYTQEQYDAKIAWIGSMVQRLDADVIAFQE
CCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCHHHHHHHH
LWDRRALEAAFQAAELSDRYAFAYIKEGAWDGIAVAAAVRKPWEIAGVKRHKAFPQGFRL
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCHHHCCCHHHHCCCCCHHH
KKRKHTMTALRANPPQADESIVPDENDEFGPSHEDERIDVSISEFSRSPLQVTVTHGTAR
HHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCEEEEEECCCCC
SPSVPPIQVFCTHLKSKLSTPLDDEEYKDPDIRPHKDALGGALSAIRRTAEAAALRIILN
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEC
DTMRDTDDPTIVLGDVNDGQFSNVLSILSGQPTFRVVAGSRAGARSDAGLYTGVTLQQLR
CCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEECCHHHHHHH
SLGDVYYTHEFKNVREVIDHALVSEQFYDYSDKRLWTFREMQFFNDHVAHASHAESDHGQ
HHHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCE
VRIWFQWVPADRRD
EEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA