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The map label for this gene is pepF [H]

Identifier: 86748556

GI number: 86748556

Start: 1620771

End: 1622603

Strand: Direct

Name: pepF [H]

Synonym: RPB_1431

Alternate gene names: 86748556

Gene position: 1620771-1622603 (Clockwise)

Preceding gene: 86748551

Following gene: 86748557

Centisome position: 30.4

GC content: 67.21

Gene sequence:

>1833_bases
ATGGCGAGCAAGTCGGCGAAGCCCGCGAAAAAGCAGGCGGCCGCGGCGGGCCGGAAGCCGGTCAAGCTGCCGGAATGGAA
TCTGGCCGATCTGTATTCGGCGATCGATGCGCCGCAGGTCGCCGCCGATCTCGACCGGCTCGACGCCGAATGCGCCGCGT
TCGAGGCCGAGTTCAAGGGCAAGCTGGCGGAGCAGGCAGCCGCCGACGGCGGCGGCGCATGGTTGGCCGGCGCGGTGAAG
CGCTACGAGGCGATCGAGGATCTGGCCGGTCGGCTCGGCTCCTATGCGGGCCTCGTCCACGCCGGCGACAGCGTCGACCC
GGTGAAGTCGAAATTCTACGGCGACGTTTCCGAGCGGCTGACCGCGGCGTCGGTGCATCTGTTGTTCTTCTCGCTGGAAC
TCAATCGCGTCGACGACGCGGTGCTGGAGCGGGCCATGCAGGCACCCGAACTCGGTCACTACCGGCCGTGGATCGAGGAT
CTGCGCAAGGACAAGCCGTATCAGCTCGACGACCGTGTCGAGCAGCTGTTCCACGAAAAGTCGCAGACCGGCTACGGCGC
CTTCAATCGGCTGTTCGACCAGACCATCTCCGGCCTGCGCTTCAAGCTCGGCGGCAAGGAACTGGCGATCGAGCCGACGC
TGAATCTGCTGCAGGACCGTACACCGGCCAAGCGCAAGGCGGCGGCCGAGGCGCTGGCCAAGACCTTCAAGGCCAACGAG
CGCACCTTCGCGCTGATCACCAATACGCTGGCCAAGGACAAGGAGATTTCCGACCGCTGGCGCGGCTTCGAGGACGTCGC
GGATTCGCGGCATCTCGCCAACCGTGTCGAGCGCGAGGTGGTCGATGCGCTGGTCGCCTCGGTGCGCGCCGCCTATCCGC
GGCTGTCGCATCGCTACTACAAGCTCAAGGCCGGCTGGTTCGGCAAGAAGAAGCTGCCGCATTGGGACCGCAACGCGCCG
CTGCCGTTCGCGGCCACCGGCAGCATCGCGTGGCCGGAAGCGCGCGAGATGGTGCTGACCGCCTACAGCGCGTTCTCGCC
GGAAATGGCGCGGATCGCCGAGCGGTTCTTCACCGATCGCTGGATCGATGCGCCGGTGCGTCCGGGCAAGGCGCCGGGCG
CGTTCTCGCACCCGACCACGCCGTCGGCGCATCCTTATGTGCTGATGAACTACCAGGGCAAGCCGCGCGACGTGATGACG
CTCGCCCATGAACTCGGCCACGGCGTGCACCAGGTGCTCGCCGCCGGCAACGGCGCGCTGATGGCGCCGACGCCGCTGAC
GCTGGCCGAGACCGCCAGCGTGTTCGGCGAGATGCTGACCTTCCGCCGGCTGCTGTCGCAGACCAAGAGCGCCAAGCAGC
GCCAGGCGTTGCTCGCCGGCAAGGTCGAGGACATGATCAACACCGTGGTGCGGCAGATCGCGTTCTACTCGTTCGAGCGC
GCGATCCACACCGAGCGCCGCAGCGGCGAACTCACCGCGCAGCGGATCGGCGAGATCTGGCTCGGCGTGCAGAGCGAGAG
CCTGGGGCCGGCGATCGAGATCAAGCCGGGCTACGAGAGCTTCTGGATGTACATCCCGCACTTCATCCATTCGCCGTTCT
ACGTCTACGCCTACGCGTTCGGCGACTGCCTGGTGAACTCGCTTTACGCGGTCTACGAGCACGCCCAGGAGGGCTTCGCC
GAGCGCTACCTCGCGATGCTCTCGGCCGGCGGCACCAAGCACTATTCCGAACTGCTGGCCCCGTTCGGCCTCGACGCCAA
GGACCCCAGCTTCTGGGACGGCGGCCTGTCGGTGATCGCCGGCATGATCGACGAACTGGAGGCGATGGGCTAG

Upstream 100 bases:

>100_bases
CCGAACTGCCAAGACTGCCCGTGTCGCCAAGACCTCGCCTGTCACCAAGACCTCGCCTGTCACCAAGGTCTCGCCTGTCA
CCAAGGCGTCGCGTAAGCCA

Downstream 100 bases:

>100_bases
GGCGGGTCGCCGTCGTAATACATTTGTTGAACGAGGCTTTGGGGCGTGTTATACAGATGTATGACATGCCCCTTTGATTT
TTCAGATGAGGATTGAATTT

Product: peptidase M3B, oligoendopeptidase-like clade 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 610; Mature: 609

Protein sequence:

>610_residues
MASKSAKPAKKQAAAAGRKPVKLPEWNLADLYSAIDAPQVAADLDRLDAECAAFEAEFKGKLAEQAAADGGGAWLAGAVK
RYEAIEDLAGRLGSYAGLVHAGDSVDPVKSKFYGDVSERLTAASVHLLFFSLELNRVDDAVLERAMQAPELGHYRPWIED
LRKDKPYQLDDRVEQLFHEKSQTGYGAFNRLFDQTISGLRFKLGGKELAIEPTLNLLQDRTPAKRKAAAEALAKTFKANE
RTFALITNTLAKDKEISDRWRGFEDVADSRHLANRVEREVVDALVASVRAAYPRLSHRYYKLKAGWFGKKKLPHWDRNAP
LPFAATGSIAWPEAREMVLTAYSAFSPEMARIAERFFTDRWIDAPVRPGKAPGAFSHPTTPSAHPYVLMNYQGKPRDVMT
LAHELGHGVHQVLAAGNGALMAPTPLTLAETASVFGEMLTFRRLLSQTKSAKQRQALLAGKVEDMINTVVRQIAFYSFER
AIHTERRSGELTAQRIGEIWLGVQSESLGPAIEIKPGYESFWMYIPHFIHSPFYVYAYAFGDCLVNSLYAVYEHAQEGFA
ERYLAMLSAGGTKHYSELLAPFGLDAKDPSFWDGGLSVIAGMIDELEAMG

Sequences:

>Translated_610_residues
MASKSAKPAKKQAAAAGRKPVKLPEWNLADLYSAIDAPQVAADLDRLDAECAAFEAEFKGKLAEQAAADGGGAWLAGAVK
RYEAIEDLAGRLGSYAGLVHAGDSVDPVKSKFYGDVSERLTAASVHLLFFSLELNRVDDAVLERAMQAPELGHYRPWIED
LRKDKPYQLDDRVEQLFHEKSQTGYGAFNRLFDQTISGLRFKLGGKELAIEPTLNLLQDRTPAKRKAAAEALAKTFKANE
RTFALITNTLAKDKEISDRWRGFEDVADSRHLANRVEREVVDALVASVRAAYPRLSHRYYKLKAGWFGKKKLPHWDRNAP
LPFAATGSIAWPEAREMVLTAYSAFSPEMARIAERFFTDRWIDAPVRPGKAPGAFSHPTTPSAHPYVLMNYQGKPRDVMT
LAHELGHGVHQVLAAGNGALMAPTPLTLAETASVFGEMLTFRRLLSQTKSAKQRQALLAGKVEDMINTVVRQIAFYSFER
AIHTERRSGELTAQRIGEIWLGVQSESLGPAIEIKPGYESFWMYIPHFIHSPFYVYAYAFGDCLVNSLYAVYEHAQEGFA
ERYLAMLSAGGTKHYSELLAPFGLDAKDPSFWDGGLSVIAGMIDELEAMG
>Mature_609_residues
ASKSAKPAKKQAAAAGRKPVKLPEWNLADLYSAIDAPQVAADLDRLDAECAAFEAEFKGKLAEQAAADGGGAWLAGAVKR
YEAIEDLAGRLGSYAGLVHAGDSVDPVKSKFYGDVSERLTAASVHLLFFSLELNRVDDAVLERAMQAPELGHYRPWIEDL
RKDKPYQLDDRVEQLFHEKSQTGYGAFNRLFDQTISGLRFKLGGKELAIEPTLNLLQDRTPAKRKAAAEALAKTFKANER
TFALITNTLAKDKEISDRWRGFEDVADSRHLANRVEREVVDALVASVRAAYPRLSHRYYKLKAGWFGKKKLPHWDRNAPL
PFAATGSIAWPEAREMVLTAYSAFSPEMARIAERFFTDRWIDAPVRPGKAPGAFSHPTTPSAHPYVLMNYQGKPRDVMTL
AHELGHGVHQVLAAGNGALMAPTPLTLAETASVFGEMLTFRRLLSQTKSAKQRQALLAGKVEDMINTVVRQIAFYSFERA
IHTERRSGELTAQRIGEIWLGVQSESLGPAIEIKPGYESFWMYIPHFIHSPFYVYAYAFGDCLVNSLYAVYEHAQEGFAE
RYLAMLSAGGTKHYSELLAPFGLDAKDPSFWDGGLSVIAGMIDELEAMG

Specific function: Unknown

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 67548; Mature: 67417

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKSAKPAKKQAAAAGRKPVKLPEWNLADLYSAIDAPQVAADLDRLDAECAAFEAEFKG
CCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
KLAEQAAADGGGAWLAGAVKRYEAIEDLAGRLGSYAGLVHAGDSVDPVKSKFYGDVSERL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHCCHHHHH
TAASVHLLFFSLELNRVDDAVLERAMQAPELGHYRPWIEDLRKDKPYQLDDRVEQLFHEK
HHHHHHHHHEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
SQTGYGAFNRLFDQTISGLRFKLGGKELAIEPTLNLLQDRTPAKRKAAAEALAKTFKANE
CCCCHHHHHHHHHHHHHCCEEEECCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
RTFALITNTLAKDKEISDRWRGFEDVADSRHLANRVEREVVDALVASVRAAYPRLSHRYY
CEEEHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
KLKAGWFGKKKLPHWDRNAPLPFAATGSIAWPEAREMVLTAYSAFSPEMARIAERFFTDR
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
WIDAPVRPGKAPGAFSHPTTPSAHPYVLMNYQGKPRDVMTLAHELGHGVHQVLAAGNGAL
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCE
MAPTPLTLAETASVFGEMLTFRRLLSQTKSAKQRQALLAGKVEDMINTVVRQIAFYSFER
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIHTERRSGELTAQRIGEIWLGVQSESLGPAIEIKPGYESFWMYIPHFIHSPFYVYAYAF
HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHH
GDCLVNSLYAVYEHAQEGFAERYLAMLSAGGTKHYSELLAPFGLDAKDPSFWDGGLSVIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
GMIDELEAMG
HHHHHHHHCC
>Mature Secondary Structure 
ASKSAKPAKKQAAAAGRKPVKLPEWNLADLYSAIDAPQVAADLDRLDAECAAFEAEFKG
CCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
KLAEQAAADGGGAWLAGAVKRYEAIEDLAGRLGSYAGLVHAGDSVDPVKSKFYGDVSERL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHCCHHHHH
TAASVHLLFFSLELNRVDDAVLERAMQAPELGHYRPWIEDLRKDKPYQLDDRVEQLFHEK
HHHHHHHHHEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
SQTGYGAFNRLFDQTISGLRFKLGGKELAIEPTLNLLQDRTPAKRKAAAEALAKTFKANE
CCCCHHHHHHHHHHHHHCCEEEECCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
RTFALITNTLAKDKEISDRWRGFEDVADSRHLANRVEREVVDALVASVRAAYPRLSHRYY
CEEEHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
KLKAGWFGKKKLPHWDRNAPLPFAATGSIAWPEAREMVLTAYSAFSPEMARIAERFFTDR
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
WIDAPVRPGKAPGAFSHPTTPSAHPYVLMNYQGKPRDVMTLAHELGHGVHQVLAAGNGAL
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCE
MAPTPLTLAETASVFGEMLTFRRLLSQTKSAKQRQALLAGKVEDMINTVVRQIAFYSFER
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIHTERRSGELTAQRIGEIWLGVQSESLGPAIEIKPGYESFWMYIPHFIHSPFYVYAYAF
HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHH
GDCLVNSLYAVYEHAQEGFAERYLAMLSAGGTKHYSELLAPFGLDAKDPSFWDGGLSVIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
GMIDELEAMG
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]