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The map label for this gene is aer [H]

Identifier: 86748538

GI number: 86748538

Start: 1603103

End: 1603660

Strand: Direct

Name: aer [H]

Synonym: RPB_1413

Alternate gene names: 86748538

Gene position: 1603103-1603660 (Clockwise)

Preceding gene: 86748537

Following gene: 86748539

Centisome position: 30.07

GC content: 59.5

Gene sequence:

>558_bases
GTGTCCGGCCCGATGATTTGCAGCCGGATAGTGACCGTGAAACAGATAGCTTCGCCGACCAATGTCGAAGTCTTTTTCGA
CGCGGACGATATCATCGTCTCGAAGACCGATCTCAAAGGCCGCATCACCTACGCCAACAAGGTGTTCACCGACATCTGCG
GGTACAGCGAAGCCGAGCTGATCGGCCAGCCGCACTCGATCGTGCGCCATCCGGATATGCCGCGCTGCGTGTTCAAGCTG
CTGTGGGACACGCTGGCGGAAGGCCGTGAGATCTTCGCCTATGTCAAGAACATGACGCGCACCGGCGACTTCTATTGGGT
GTTCGCCCATGTCACGCCGTCGTTCGATTCGGCCAAACGGGTGATCGGCTACCACTCCAATCGCCGCGTGCCGGATCGCC
GGGTCGTTTCGGCGCTGGCGCCGGTCTACGCCGAGTTGAGCGAGGTGGAAAAGCGTCATCGCAACGGCAAGGACGGGCTC
GCCGCCGGCACGCAGCACCTGATCGATTTCGTCAAAGCCAAGAATGTGCCCTATGATCAACTCGTCTTCTCTCTCTAA

Upstream 100 bases:

>100_bases
GAGTTGAGAGAAATGTGTCGCGATCGGGTAAGTTGCGCATTCATCGAGCGAACTAACTCTTAATTCTCCGGCTCGTATTT
ATTCGAGGCCGGGACATTGC

Downstream 100 bases:

>100_bases
CGCGGCCGTTTGTCTCGGCGGCGTCGTCGTTTCCGCGCTGGCGGCGGCGGCGGGCTTGCTGGCCGATATGCCGCTGTTGC
TGGCGGTCGGACTCGTCGCG

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MSGPMICSRIVTVKQIASPTNVEVFFDADDIIVSKTDLKGRITYANKVFTDICGYSEAELIGQPHSIVRHPDMPRCVFKL
LWDTLAEGREIFAYVKNMTRTGDFYWVFAHVTPSFDSAKRVIGYHSNRRVPDRRVVSALAPVYAELSEVEKRHRNGKDGL
AAGTQHLIDFVKAKNVPYDQLVFSL

Sequences:

>Translated_185_residues
MSGPMICSRIVTVKQIASPTNVEVFFDADDIIVSKTDLKGRITYANKVFTDICGYSEAELIGQPHSIVRHPDMPRCVFKL
LWDTLAEGREIFAYVKNMTRTGDFYWVFAHVTPSFDSAKRVIGYHSNRRVPDRRVVSALAPVYAELSEVEKRHRNGKDGL
AAGTQHLIDFVKAKNVPYDQLVFSL
>Mature_184_residues
SGPMICSRIVTVKQIASPTNVEVFFDADDIIVSKTDLKGRITYANKVFTDICGYSEAELIGQPHSIVRHPDMPRCVFKLL
WDTLAEGREIFAYVKNMTRTGDFYWVFAHVTPSFDSAKRVIGYHSNRRVPDRRVVSALAPVYAELSEVEKRHRNGKDGLA
AGTQHLIDFVKAKNVPYDQLVFSL

Specific function: Signal transducer for aerotaxis. The aerotactic response is the accumulation of cells around air bubbles. The nature of the sensory stimulus detected by this protein is the proton motive force or cellular redox state. It uses a FAD prosthetic group as a r

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=119, Percent_Identity=41.1764705882353, Blast_Score=101, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF08447 PAS_3 [H]

EC number: NA

Molecular weight: Translated: 20909; Mature: 20778

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPMICSRIVTVKQIASPTNVEVFFDADDIIVSKTDLKGRITYANKVFTDICGYSEAEL
CCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCEEEEHHHHHHHHHHCCCCHHH
IGQPHSIVRHPDMPRCVFKLLWDTLAEGREIFAYVKNMTRTGDFYWVFAHVTPSFDSAKR
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHH
VIGYHSNRRVPDRRVVSALAPVYAELSEVEKRHRNGKDGLAAGTQHLIDFVKAKNVPYDQ
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHH
LVFSL
HHHCC
>Mature Secondary Structure 
SGPMICSRIVTVKQIASPTNVEVFFDADDIIVSKTDLKGRITYANKVFTDICGYSEAEL
CCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCEEEEHHHHHHHHHHCCCCHHH
IGQPHSIVRHPDMPRCVFKLLWDTLAEGREIFAYVKNMTRTGDFYWVFAHVTPSFDSAKR
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHH
VIGYHSNRRVPDRRVVSALAPVYAELSEVEKRHRNGKDGLAAGTQHLIDFVKAKNVPYDQ
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHH
LVFSL
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 9190831; 9380671 [H]