BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is bdhA [H]

Identifier: 86748533

GI number: 86748533

Start: 1599501

End: 1600346

Strand: Direct

Name: bdhA [H]

Synonym: RPB_1408

Alternate gene names: 86748533

Gene position: 1599501-1600346 (Clockwise)

Preceding gene: 86748532

Following gene: 86748537

Centisome position: 30.0

GC content: 64.66

Gene sequence:

>846_bases
ATGCGATCAAATAGCGGCGCGCAGCCGTTTTTGCAGACGATCGAACAGGAGCAGATGATGACGAACCTCACGGGCAAGAC
CGCGGTCGTGACCGGCTCGACCTCGGGCATCGGCCTCGCTTACGCGCGCGCCTTCGCCAAGGCCGGCGCCAATGTGGTGT
TGAACGGCATGGGCGAGGCGGACGCGATCGAAAAGGAGCGCAAGGCGATCGAGACCGATTTCGGCGTGAAGGCGGTGTAT
TCGCCGGCCGACATGCTGAAGCCCGCCGAGATCGCCGAGATGGTCGGGCTCGGCGAGACGACGTTCGGCTCGGTCGACAT
CCTGGTCAACAACGCCGGCATTCAGTTCGTCTCGCCGGTCGAGGATTTTCCGATCGAGAAATGGGACGCGATCATCGGCA
TCAACTTGTCGTCGGCGTTCCACGGCATCCGCGCCGCGGTGCCGGGCATGAAGAAGCGCGGCTGGGGCCGCATCATCAAC
ACCGCCTCGGCCCACTCGCTGGTCGCCTCGCCGTTCAAGTCGGCCTATGTCGCCGCCAAGCACGGCATCGCCGGCCTGAC
CAAGACGGTGGCGCTCGAAGTCGCGACCCACAAGATCACCTGCAACTGCATTTCGCCGGGCTATGTCTGGACGCCGCTGG
TCGAGAAGCAGATCCCCGACACCATGAAGGCGCGCGGCCTCACCAAGGAGCAGGTGATCAACGACGTGCTGCTGCTGGCT
CAACCGACCAAGCAGTTCGTCACCTCCGAGCAGGTCGCCGCCCTCGCGGTCTATCTGTGCAGCGACGACGCCAGCCAGAT
CACCGGCGCCAATCTGTCGATGGACGGCGGCTGGACCGCGGCGTAA

Upstream 100 bases:

>100_bases
AAATCCGGCGAACAGGATGTCTATGTCTCGATGCGCCACGAGGAGTGGCAGAGCGGGCCGCAGGACGGCGAGACCATGGT
GACCTGGGACCTCACCCGGG

Downstream 100 bases:

>100_bases
GCCGAACAGATAGCGATGGACGTGTGCGAGGGGGCACACGCGTACAACTCGACAAGACGTCATCCTCCGCGAAAGCGGAG
GATCCAGTATCCCAGAGCAT

Product: 3-hydroxybutyrate dehydrogenase

Products: NA

Alternate protein names: BDH; 3-hydroxybutyrate dehydrogenase; 3-HBDH [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MRSNSGAQPFLQTIEQEQMMTNLTGKTAVVTGSTSGIGLAYARAFAKAGANVVLNGMGEADAIEKERKAIETDFGVKAVY
SPADMLKPAEIAEMVGLGETTFGSVDILVNNAGIQFVSPVEDFPIEKWDAIIGINLSSAFHGIRAAVPGMKKRGWGRIIN
TASAHSLVASPFKSAYVAAKHGIAGLTKTVALEVATHKITCNCISPGYVWTPLVEKQIPDTMKARGLTKEQVINDVLLLA
QPTKQFVTSEQVAALAVYLCSDDASQITGANLSMDGGWTAA

Sequences:

>Translated_281_residues
MRSNSGAQPFLQTIEQEQMMTNLTGKTAVVTGSTSGIGLAYARAFAKAGANVVLNGMGEADAIEKERKAIETDFGVKAVY
SPADMLKPAEIAEMVGLGETTFGSVDILVNNAGIQFVSPVEDFPIEKWDAIIGINLSSAFHGIRAAVPGMKKRGWGRIIN
TASAHSLVASPFKSAYVAAKHGIAGLTKTVALEVATHKITCNCISPGYVWTPLVEKQIPDTMKARGLTKEQVINDVLLLA
QPTKQFVTSEQVAALAVYLCSDDASQITGANLSMDGGWTAA
>Mature_281_residues
MRSNSGAQPFLQTIEQEQMMTNLTGKTAVVTGSTSGIGLAYARAFAKAGANVVLNGMGEADAIEKERKAIETDFGVKAVY
SPADMLKPAEIAEMVGLGETTFGSVDILVNNAGIQFVSPVEDFPIEKWDAIIGINLSSAFHGIRAAVPGMKKRGWGRIIN
TASAHSLVASPFKSAYVAAKHGIAGLTKTVALEVATHKITCNCISPGYVWTPLVEKQIPDTMKARGLTKEQVINDVLLLA
QPTKQFVTSEQVAALAVYLCSDDASQITGANLSMDGGWTAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI66933014, Length=262, Percent_Identity=34.3511450381679, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=31.25, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI4504505, Length=268, Percent_Identity=30.5970149253731, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI19923817, Length=265, Percent_Identity=28.3018867924528, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI20149619, Length=252, Percent_Identity=30.1587301587302, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=31.6939890710383, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI59889578, Length=239, Percent_Identity=30.1255230125523, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI7705925, Length=260, Percent_Identity=29.6153846153846, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=28.515625, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4758504, Length=209, Percent_Identity=32.0574162679426, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI15277342, Length=269, Percent_Identity=28.6245353159851, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI142976729, Length=232, Percent_Identity=32.3275862068966, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=30.5, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI7657478, Length=191, Percent_Identity=27.7486910994764, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7706318, Length=252, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=30.8900523560209, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI83715985, Length=190, Percent_Identity=31.5789473684211, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI40254992, Length=253, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=25.0980392156863, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI223718074, Length=118, Percent_Identity=31.3559322033898, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI7705855, Length=209, Percent_Identity=28.7081339712919, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI4503301, Length=270, Percent_Identity=25.5555555555556, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI224922801, Length=174, Percent_Identity=30.4597701149425, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI226371731, Length=207, Percent_Identity=29.4685990338164, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI157739938, Length=189, Percent_Identity=24.8677248677249, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI302344755, Length=103, Percent_Identity=35.9223300970874, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40254986, Length=173, Percent_Identity=30.0578034682081, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=35.4961832061069, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI87082160, Length=263, Percent_Identity=34.2205323193916, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787335, Length=257, Percent_Identity=34.2412451361868, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788459, Length=260, Percent_Identity=32.3076923076923, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790717, Length=264, Percent_Identity=29.9242424242424, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789208, Length=261, Percent_Identity=29.8850574712644, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI2367175, Length=255, Percent_Identity=31.7647058823529, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1786812, Length=261, Percent_Identity=29.5019157088123, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787905, Length=255, Percent_Identity=30.1960784313725, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789378, Length=257, Percent_Identity=29.1828793774319, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI2367365, Length=261, Percent_Identity=29.1187739463602, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=27.0588235294118, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=27.3224043715847, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786701, Length=186, Percent_Identity=25.8064516129032, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=265, Percent_Identity=32.0754716981132, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=262, Percent_Identity=27.8625954198473, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17555706, Length=262, Percent_Identity=27.0992366412214, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=264, Percent_Identity=29.9242424242424, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=272, Percent_Identity=30.5147058823529, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17568967, Length=250, Percent_Identity=28.4, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=274, Percent_Identity=26.2773722627737, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=30.1158301158301, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=204, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=204, Percent_Identity=29.9019607843137, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=204, Percent_Identity=30.8823529411765, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=278, Percent_Identity=28.0575539568345, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=28.968253968254, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=217, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=281, Percent_Identity=28.4697508896797, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17564282, Length=190, Percent_Identity=28.4210526315789, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI193203115, Length=198, Percent_Identity=30.8080808080808, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=278, Percent_Identity=30.2158273381295, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=204, Percent_Identity=32.843137254902, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=283, Percent_Identity=27.208480565371, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=274, Percent_Identity=26.2773722627737, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=203, Percent_Identity=32.0197044334975, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=274, Percent_Identity=28.4671532846715, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17561272, Length=267, Percent_Identity=28.4644194756554, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=280, Percent_Identity=28.9285714285714, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=266, Percent_Identity=25.5639097744361, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=269, Percent_Identity=27.5092936802974, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=273, Percent_Identity=26.7399267399267, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=204, Percent_Identity=29.9019607843137, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=202, Percent_Identity=29.7029702970297, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=259, Percent_Identity=24.3243243243243, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=274, Percent_Identity=26.2773722627737, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=197, Percent_Identity=25.3807106598985, Blast_Score=68, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6322861, Length=235, Percent_Identity=30.2127659574468, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6324126, Length=177, Percent_Identity=27.1186440677966, Blast_Score=66, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=27.4611398963731, Blast_Score=66, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6322227, Length=215, Percent_Identity=24.6511627906977, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24644339, Length=266, Percent_Identity=31.9548872180451, Blast_Score=111, Evalue=6e-25,
Organism=Drosophila melanogaster, GI21358495, Length=260, Percent_Identity=26.9230769230769, Blast_Score=107, Evalue=8e-24,
Organism=Drosophila melanogaster, GI21355319, Length=265, Percent_Identity=30.188679245283, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI28571526, Length=262, Percent_Identity=30.9160305343511, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI18859837, Length=210, Percent_Identity=36.1904761904762, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=31.7829457364341, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21357041, Length=264, Percent_Identity=28.4090909090909, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24643142, Length=264, Percent_Identity=26.8939393939394, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28574402, Length=211, Percent_Identity=30.8056872037915, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24584744, Length=211, Percent_Identity=30.8056872037915, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24639444, Length=269, Percent_Identity=30.1115241635688, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=34.0314136125654, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24640442, Length=213, Percent_Identity=30.0469483568075, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=34.0314136125654, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI17737361, Length=199, Percent_Identity=28.643216080402, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21356301, Length=199, Percent_Identity=26.1306532663317, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI281364494, Length=247, Percent_Identity=28.7449392712551, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI281364892, Length=173, Percent_Identity=27.1676300578035, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571387, Length=216, Percent_Identity=26.8518518518519, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24644337, Length=260, Percent_Identity=28.4615384615385, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21355631, Length=176, Percent_Identity=29.5454545454545, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.30 [H]

Molecular weight: Translated: 29661; Mature: 29661

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSNSGAQPFLQTIEQEQMMTNLTGKTAVVTGSTSGIGLAYARAFAKAGANVVLNGMGEA
CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCH
DAIEKERKAIETDFGVKAVYSPADMLKPAEIAEMVGLGETTFGSVDILVNNAGIQFVSPV
HHHHHHHHHHHCCCCCEEEECCHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCEEECCC
EDFPIEKWDAIIGINLSSAFHGIRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVAAK
CCCCCCHHCEEEEEEHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHH
HGIAGLTKTVALEVATHKITCNCISPGYVWTPLVEKQIPDTMKARGLTKEQVINDVLLLA
CCHHHHHHHHEEEEEEEEEEEEEECCCCEECCHHHHHCCHHHHHCCCCHHHHHHHHHHEE
QPTKQFVTSEQVAALAVYLCSDDASQITGANLSMDGGWTAA
CCHHHHHHHHHHHHEEEEEECCCHHHHCCCCEEECCCCCCC
>Mature Secondary Structure
MRSNSGAQPFLQTIEQEQMMTNLTGKTAVVTGSTSGIGLAYARAFAKAGANVVLNGMGEA
CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCH
DAIEKERKAIETDFGVKAVYSPADMLKPAEIAEMVGLGETTFGSVDILVNNAGIQFVSPV
HHHHHHHHHHHCCCCCEEEECCHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCEEECCC
EDFPIEKWDAIIGINLSSAFHGIRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVAAK
CCCCCCHHCEEEEEEHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHH
HGIAGLTKTVALEVATHKITCNCISPGYVWTPLVEKQIPDTMKARGLTKEQVINDVLLLA
CCHHHHHHHHEEEEEEEEEEEEEECCCCEECCHHHHHCCHHHHHCCCCHHHHHHHHHHEE
QPTKQFVTSEQVAALAVYLCSDDASQITGANLSMDGGWTAA
CCHHHHHHHHHHHHEEEEEECCCHHHHCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9922248; 11481431 [H]