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The map label for this gene is 86748434

Identifier: 86748434

GI number: 86748434

Start: 1491948

End: 1492748

Strand: Direct

Name: 86748434

Synonym: RPB_1309

Alternate gene names: NA

Gene position: 1491948-1492748 (Clockwise)

Preceding gene: 86748433

Following gene: 86748435

Centisome position: 27.98

GC content: 64.79

Gene sequence:

>801_bases
ATGGTTTGTTCGGCGGCCGTGGCCGCGGATATGCCGATTGCCCCGCCGCCGGCCTACGCGCCGCCGCCGGTCGAGGATTT
CGGCGGCTGGTATCTGCGCGGCGATATCGGCTTCAGCAACCAGCAGGTCAAGGATCTGCGCTACGGCCGCGAGTCGGCCT
ATTCGCAGCTGACCTCGTTCGACCAGCAGACCTCGTTCGACGCGGCCGGCATCTTCGGCGTCGGTGTCGGTTATCAGTTC
AACAACTGGTTCCGCGCCGACGTGGTCGGCCAGTATCGCGGCAACTCGAACTTCAAGGGCACCGATCGCTTCACCGGCAC
CGCCGGCGGCGTCGCGTACAACGGCATCGACAATTACGGCGCCAGCAAATCCGAATGGCTGGTGATGGCCAACGGCTATG
TCGATCTCGGCACCTGGTGGTGCGTGACGCCGTTCATCGGCGCCGGCGTCGGCGCCGCGCGGGTGACGATGGCGAACTTC
ACCGACACCGGCATCAACAATCTGCCGTTCTCGACCACCAGCTTCGCCAGCGCGCCGACGGCGTCGAAGTGGAACCTGGC
CTGGGCGGTCCACACCGGTCTGGCCTACAAGGTCAATCCGAACCTGACGCTCGAACTCGCCTACAGCTATCTCAATCTCG
GCGACGGCTATACCGGTGCGCTCTCGGCCTTCACCGGCGCGACCACGAACAACAGCTTCAAGTTCAAGGACATCACCTCG
CACGACGTGAAGGTGGGCGTGCGCTGGAATCTCGACAGCGCCCCGGCCTACTACCCGCCGCCGCTGATGCGCAAGGGTTG
A

Upstream 100 bases:

>100_bases
CATAGGTTTCCGGGTGTGGGGCCTCCGTAACTCATCATTGGACCAGAGGACGAAGCCAATGCGTAGCGTGAAAATGATTC
TGGCCGCCGGAGCGGCTTCG

Downstream 100 bases:

>100_bases
ACGAAGTACCCGTCTTAAGATGTCTTAACGGCGCGGGAGTTTCCCGCGCCGTTTTGTTTTGCGCCGAGCCGGCGGCGACA
ACGATTGATTAAGGTTAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MVCSAAVAADMPIAPPPAYAPPPVEDFGGWYLRGDIGFSNQQVKDLRYGRESAYSQLTSFDQQTSFDAAGIFGVGVGYQF
NNWFRADVVGQYRGNSNFKGTDRFTGTAGGVAYNGIDNYGASKSEWLVMANGYVDLGTWWCVTPFIGAGVGAARVTMANF
TDTGINNLPFSTTSFASAPTASKWNLAWAVHTGLAYKVNPNLTLELAYSYLNLGDGYTGALSAFTGATTNNSFKFKDITS
HDVKVGVRWNLDSAPAYYPPPLMRKG

Sequences:

>Translated_266_residues
MVCSAAVAADMPIAPPPAYAPPPVEDFGGWYLRGDIGFSNQQVKDLRYGRESAYSQLTSFDQQTSFDAAGIFGVGVGYQF
NNWFRADVVGQYRGNSNFKGTDRFTGTAGGVAYNGIDNYGASKSEWLVMANGYVDLGTWWCVTPFIGAGVGAARVTMANF
TDTGINNLPFSTTSFASAPTASKWNLAWAVHTGLAYKVNPNLTLELAYSYLNLGDGYTGALSAFTGATTNNSFKFKDITS
HDVKVGVRWNLDSAPAYYPPPLMRKG
>Mature_266_residues
MVCSAAVAADMPIAPPPAYAPPPVEDFGGWYLRGDIGFSNQQVKDLRYGRESAYSQLTSFDQQTSFDAAGIFGVGVGYQF
NNWFRADVVGQYRGNSNFKGTDRFTGTAGGVAYNGIDNYGASKSEWLVMANGYVDLGTWWCVTPFIGAGVGAARVTMANF
TDTGINNLPFSTTSFASAPTASKWNLAWAVHTGLAYKVNPNLTLELAYSYLNLGDGYTGALSAFTGATTNNSFKFKDITS
HDVKVGVRWNLDSAPAYYPPPLMRKG

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017690
- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 28647; Mature: 28647

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVCSAAVAADMPIAPPPAYAPPPVEDFGGWYLRGDIGFSNQQVKDLRYGRESAYSQLTSF
CCCCCCHHCCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHCHHHHHHHHHHH
DQQTSFDAAGIFGVGVGYQFNNWFRADVVGQYRGNSNFKGTDRFTGTAGGVAYNGIDNYG
HHHCCCCCCCEEEEECCCEECCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCC
ASKSEWLVMANGYVDLGTWWCVTPFIGAGVGAARVTMANFTDTGINNLPFSTTSFASAPT
CCCCCEEEEECCEEECCHHEEHHHHHHCCCCHHEEEEECCCCCCCCCCCCCCCCCCCCCC
ASKWNLAWAVHTGLAYKVNPNLTLELAYSYLNLGDGYTGALSAFTGATTNNSFKFKDITS
CCCCEEEEEEECCEEEEECCCEEEEEEEEEHCCCCCCCHHHHHHCCCCCCCCEEEEECCC
HDVKVGVRWNLDSAPAYYPPPLMRKG
CCEEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVCSAAVAADMPIAPPPAYAPPPVEDFGGWYLRGDIGFSNQQVKDLRYGRESAYSQLTSF
CCCCCCHHCCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCHHHHHHHCHHHHHHHHHHH
DQQTSFDAAGIFGVGVGYQFNNWFRADVVGQYRGNSNFKGTDRFTGTAGGVAYNGIDNYG
HHHCCCCCCCEEEEECCCEECCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCC
ASKSEWLVMANGYVDLGTWWCVTPFIGAGVGAARVTMANFTDTGINNLPFSTTSFASAPT
CCCCCEEEEECCEEECCHHEEHHHHHHCCCCHHEEEEECCCCCCCCCCCCCCCCCCCCCC
ASKWNLAWAVHTGLAYKVNPNLTLELAYSYLNLGDGYTGALSAFTGATTNNSFKFKDITS
CCCCEEEEEEECCEEEEECCCEEEEEEEEEHCCCCCCCHHHHHHCCCCCCCCEEEEECCC
HDVKVGVRWNLDSAPAYYPPPLMRKG
CCEEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA