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The map label for this gene is fliD [H]

Identifier: 86747887

GI number: 86747887

Start: 854506

End: 856185

Strand: Direct

Name: fliD [H]

Synonym: RPB_0761

Alternate gene names: 86747887

Gene position: 854506-856185 (Clockwise)

Preceding gene: 86747886

Following gene: 86747888

Centisome position: 16.03

GC content: 65.54

Gene sequence:

>1680_bases
ATGGCCACCGTCACCAGTTCGACTTCCGCCTCGGCGACGGCCGCGCTCGCGACCACGACGTCCGGCACCACGACCACGAC
GAGCGTCGATTGGGATGCGTTGATCGAAGCGCAGGTGGCGACCAAGACCGCCGCCGCCGACACCATCGAGACCAGCATCA
CGGCCAACGAAGCCAAGATCTCGGCCTACCAAAATCTGCAGACGCTGCTCGACACGCTCGTGACCAGCACCACCTCGCTG
TCGAAGTCGATCGTCAACTCGCTGTCCGACAGCACCTTCGGCGCCCGCGCGGCCACGATCACCTCGAGCGGCGACGTCAG
CGCCAGCTCCGCGGTGTCGATGTCGATCAGCAACGGCGCCGCCACCGGCGACCATACGCTCACGGTCGAGCAGATCGCCA
CCGCGCACCGCGTGATCGGAACCAGCGTCGCGGACAAATCCGCGGATATGGGCCTGACCGGCGTGTTCTCGCTCGGCCTG
GCCGGCGGCACCAGCGTCGACGTCTCGATCACCAGCGGCATGTCGATGGAAGACATCGCCGACACCATCAATGCGCAGAG
CGACAGCACCAACGTCCAGGCCTCGATCATCCAGATCTCGAGCACCGAATACGCGCTGACGCTGACCGCGCTGAACGACA
ACGCCGAGATCACCACCAGCGTCGTCTCCGGCGACGACGTGCTGACGACGCTCGGCGTCACCGATTCCGCCGGCGACTTC
ACCGACGTGCTGCAGGAGCCGCAGCCGGCGCTGTTCACGGTCGACGGCATCTCGCTGACCCGCGACACCAACGACATCAC
CGACGTGCTGAGCGGCGTGACCTTCAGCCTGCTGCAGGCGACGCCGGACGGCTCGACCATCAATCTCAGCATCGACGTCG
ACGCCGACCAGATCGCGGCCGCGCTGGAGGAGTTCGTCACCGCCTACAACGCCGTCCGCGAGGAGGTCACCGCGCAGCAG
ACGCTGACCTCGGACGGGACCGCGGATTCCAGCGCCGTGCTGTTCGGCGACGGCACCATGCGCAGCATCATGACGCAGAT
CGAACAGGCGATGAACTCCACCGTCGGCGGACTGTCGATGACCGACCTCGGGCTGTCGTTCACCGACACCAATACGCTCG
AGTTCGACACCAGCGTGCTGTCGGCCACGCTGACCGAAGACCTCTCGGGCGTGATCGCTCTGCTGGCGTCGAAGACGACG
GCGTCGTCGAGCTCGCTCTCGGTGGTCAATACCAACTCGTCGCCGCCGTCGTCCTTCGTGCTCGACATCGCGGTCGACGA
TTCCGGCGCCCTGACGGTGTCGGTCGGCGGCGACAGCTCGCTGTTCACCGTCAGCGGCAACACCATCATCGGCGCCTCCG
GCACGGTGTATTCCGGCATGGCCTTCACCTATTCGGGCTCCAGCTCGGCGTCGATCACCGTGACCTCGACCTCCGGCATC
GCGGCGCAGATCAACAACATCGCCGACCTCGCCTCCGACACCAGCACGGGGTCGCTGCAGGATCTGGTCACCAGCCTGCA
ATCGCAGGACGACCGGATGGAGCAGCAGATCAACGACATCAACGAGCGGGCCGAAATCTACCGCGCGATGCTGGTCAGCC
AATACGCCAAATACCAGAGCGCGATCTCCACGGCGGACACCACGCTCGACTATCTCTCCGCTCTCCTCAACGACGAGTAA

Upstream 100 bases:

>100_bases
ATGCCGCAATATCTGCTGAACCTGCTCGGCTGACGCCGTTCCGATCCGGTGAACCGGCGTTCGCGCCGGTTCGCCGCCCA
GCGCAGGAGATCCGACCGCC

Downstream 100 bases:

>100_bases
CCGATCATGCAGAACCACGCCCGCCTTCACGCGGCTCAGGCCTATCGCAGCGCCGCCGTCGCCGTTCCGCCGCTGCGCGC
GGTGGCGATGCTGCTCGACG

Product: flagellar hook-associated protein

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 559; Mature: 558

Protein sequence:

>559_residues
MATVTSSTSASATAALATTTSGTTTTTSVDWDALIEAQVATKTAAADTIETSITANEAKISAYQNLQTLLDTLVTSTTSL
SKSIVNSLSDSTFGARAATITSSGDVSASSAVSMSISNGAATGDHTLTVEQIATAHRVIGTSVADKSADMGLTGVFSLGL
AGGTSVDVSITSGMSMEDIADTINAQSDSTNVQASIIQISSTEYALTLTALNDNAEITTSVVSGDDVLTTLGVTDSAGDF
TDVLQEPQPALFTVDGISLTRDTNDITDVLSGVTFSLLQATPDGSTINLSIDVDADQIAAALEEFVTAYNAVREEVTAQQ
TLTSDGTADSSAVLFGDGTMRSIMTQIEQAMNSTVGGLSMTDLGLSFTDTNTLEFDTSVLSATLTEDLSGVIALLASKTT
ASSSSLSVVNTNSSPPSSFVLDIAVDDSGALTVSVGGDSSLFTVSGNTIIGASGTVYSGMAFTYSGSSSASITVTSTSGI
AAQINNIADLASDTSTGSLQDLVTSLQSQDDRMEQQINDINERAEIYRAMLVSQYAKYQSAISTADTTLDYLSALLNDE

Sequences:

>Translated_559_residues
MATVTSSTSASATAALATTTSGTTTTTSVDWDALIEAQVATKTAAADTIETSITANEAKISAYQNLQTLLDTLVTSTTSL
SKSIVNSLSDSTFGARAATITSSGDVSASSAVSMSISNGAATGDHTLTVEQIATAHRVIGTSVADKSADMGLTGVFSLGL
AGGTSVDVSITSGMSMEDIADTINAQSDSTNVQASIIQISSTEYALTLTALNDNAEITTSVVSGDDVLTTLGVTDSAGDF
TDVLQEPQPALFTVDGISLTRDTNDITDVLSGVTFSLLQATPDGSTINLSIDVDADQIAAALEEFVTAYNAVREEVTAQQ
TLTSDGTADSSAVLFGDGTMRSIMTQIEQAMNSTVGGLSMTDLGLSFTDTNTLEFDTSVLSATLTEDLSGVIALLASKTT
ASSSSLSVVNTNSSPPSSFVLDIAVDDSGALTVSVGGDSSLFTVSGNTIIGASGTVYSGMAFTYSGSSSASITVTSTSGI
AAQINNIADLASDTSTGSLQDLVTSLQSQDDRMEQQINDINERAEIYRAMLVSQYAKYQSAISTADTTLDYLSALLNDE
>Mature_558_residues
ATVTSSTSASATAALATTTSGTTTTTSVDWDALIEAQVATKTAAADTIETSITANEAKISAYQNLQTLLDTLVTSTTSLS
KSIVNSLSDSTFGARAATITSSGDVSASSAVSMSISNGAATGDHTLTVEQIATAHRVIGTSVADKSADMGLTGVFSLGLA
GGTSVDVSITSGMSMEDIADTINAQSDSTNVQASIIQISSTEYALTLTALNDNAEITTSVVSGDDVLTTLGVTDSAGDFT
DVLQEPQPALFTVDGISLTRDTNDITDVLSGVTFSLLQATPDGSTINLSIDVDADQIAAALEEFVTAYNAVREEVTAQQT
LTSDGTADSSAVLFGDGTMRSIMTQIEQAMNSTVGGLSMTDLGLSFTDTNTLEFDTSVLSATLTEDLSGVIALLASKTTA
SSSSLSVVNTNSSPPSSFVLDIAVDDSGALTVSVGGDSSLFTVSGNTIIGASGTVYSGMAFTYSGSSSASITVTSTSGIA
AQINNIADLASDTSTGSLQDLVTSLQSQDDRMEQQINDINERAEIYRAMLVSQYAKYQSAISTADTTLDYLSALLNDE

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=385, Percent_Identity=30.1298701298701, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 57065; Mature: 56933

Theoretical pI: Translated: 3.48; Mature: 3.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVTSSTSASATAALATTTSGTTTTTSVDWDALIEAQVATKTAAADTIETSITANEAKI
CCEECCCCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCEECCHHHH
SAYQNLQTLLDTLVTSTTSLSKSIVNSLSDSTFGARAATITSSGDVSASSAVSMSISNGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCC
ATGDHTLTVEQIATAHRVIGTSVADKSADMGLTGVFSLGLAGGTSVDVSITSGMSMEDIA
CCCCCEEEHHHHHHHHHHHHCHHCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCHHHHH
DTINAQSDSTNVQASIIQISSTEYALTLTALNDNAEITTSVVSGDDVLTTLGVTDSAGDF
HHHCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCH
TDVLQEPQPALFTVDGISLTRDTNDITDVLSGVTFSLLQATPDGSTINLSIDVDADQIAA
HHHHHCCCCCEEEECCEEEECCCHHHHHHHHHHHEEHHEECCCCCEEEEEEECCHHHHHH
ALEEFVTAYNAVREEVTAQQTLTSDGTADSSAVLFGDGTMRSIMTQIEQAMNSTVGGLSM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEE
TDLGLSFTDTNTLEFDTSVLSATLTEDLSGVIALLASKTTASSSSLSVVNTNSSPPSSFV
ECCCEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEE
LDIAVDDSGALTVSVGGDSSLFTVSGNTIIGASGTVYSGMAFTYSGSSSASITVTSTSGI
EEEEECCCCEEEEEECCCCEEEEEECCEEEECCCCEECCEEEEECCCCCCEEEEEECCCC
AAQINNIADLASDTSTGSLQDLVTSLQSQDDRMEQQINDINERAEIYRAMLVSQYAKYQS
HHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AISTADTTLDYLSALLNDE
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATVTSSTSASATAALATTTSGTTTTTSVDWDALIEAQVATKTAAADTIETSITANEAKI
CEECCCCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCEECCHHHH
SAYQNLQTLLDTLVTSTTSLSKSIVNSLSDSTFGARAATITSSGDVSASSAVSMSISNGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCC
ATGDHTLTVEQIATAHRVIGTSVADKSADMGLTGVFSLGLAGGTSVDVSITSGMSMEDIA
CCCCCEEEHHHHHHHHHHHHCHHCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCHHHHH
DTINAQSDSTNVQASIIQISSTEYALTLTALNDNAEITTSVVSGDDVLTTLGVTDSAGDF
HHHCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCH
TDVLQEPQPALFTVDGISLTRDTNDITDVLSGVTFSLLQATPDGSTINLSIDVDADQIAA
HHHHHCCCCCEEEECCEEEECCCHHHHHHHHHHHEEHHEECCCCCEEEEEEECCHHHHHH
ALEEFVTAYNAVREEVTAQQTLTSDGTADSSAVLFGDGTMRSIMTQIEQAMNSTVGGLSM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEE
TDLGLSFTDTNTLEFDTSVLSATLTEDLSGVIALLASKTTASSSSLSVVNTNSSPPSSFV
ECCCEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEE
LDIAVDDSGALTVSVGGDSSLFTVSGNTIIGASGTVYSGMAFTYSGSSSASITVTSTSGI
EEEEECCCCEEEEEECCCCEEEEEECCEEEECCCCEECCEEEEECCCCCCEEEEEECCCC
AAQINNIADLASDTSTGSLQDLVTSLQSQDDRMEQQINDINERAEIYRAMLVSQYAKYQS
HHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AISTADTTLDYLSALLNDE
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1527488; 9097040; 9278503; 2659972; 6305924 [H]