| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is dnaJ
Identifier: 86747556
GI number: 86747556
Start: 474126
End: 475265
Strand: Direct
Name: dnaJ
Synonym: RPB_0430
Alternate gene names: 86747556
Gene position: 474126-475265 (Clockwise)
Preceding gene: 86747555
Following gene: 86747557
Centisome position: 8.89
GC content: 66.14
Gene sequence:
>1140_bases ATGTCCACCACCAAGCGTTGCTACTACGAAACTCTTGAAGTCGAGCGGAGCGCCGACGAATCGACGCTCAAAAGCGCGTT TCGCAAGCTGGCGATGAAATGGCATCCGGATCGCAATCCGGGCGACGCCTCCAGCGAAATCAAGTTCAAGGAAATCAACG AAGCCTACGAGGTGCTCAAGGACGGCGACAAGCGCGCCGCCTACGACCGCTACGGCCATGCCGCGTTCGAGCAGGGCATG GGCGGCGGCGGTCCGGGCTTCGGCGCCGGTTTCGCCTCCTCGTTCTCGGACATTTTCGAAGACCTGTTCGGCATGGCCGG ACAGCGCGGGCGCGGCACCGGCCGCGAGCGTGGCGCCGACCTGCGCTACAACATGGAAATCACCCTCGAGGACGCCTACA AGGGCAAGACCGCGCAGATCGAGATTCCGGTCTCGGTCACCTGCGAGTCCTGCTCGGGCACCGGCGCCAAGGCCGGCACC AAGCCGAAGACCTGCTCGACCTGCGGCGGCGCCGGCCGCGTTCGCCAGGCCCAGGGCTTCTTCACGCTGGAGCGCACCTG TCCGAGCTGCCAGGGCCGCGGCCAGATCATCGAGGACCCCTGCCCGTCCTGCACCGGCTCCGGCCGCGTCACCAAGGAGC GGACGCTGTCGGTGAACATCCCGCAGGGCGTCGAGGACGGCACCCGAATCCGCCTCGCCGGCGAAGGTGAGGCCGGCGTC CGCGGCGGCCCGCCCGGCGACCTCTACATCTTCCTGTCGCTCGCCTCGCACGCCATTTTCCAGCGCGACGGTGCCGATCT GCACTGCCGGGTGCCGATCTCGATGGTGACGGCGGCCCTCGGCGGTGAATTCGAGGTGCCGACGATCGAGCGCGGCAAGA CCAAGGTGAAGGTGCCGTCGGGCACCCAGACCGGCCGGCGATTCCGCATCGCGGGAAAAGGCATGCCGGTGCTGCGGTCG CGCCAGGTCGGCGACATGTATGTCCAGGTTGCCGTGGAAACGCCGCAGAATTTGACCAAGAAGCAGCAGGAGCTGCTGGC CGAGTTCGAAAAATTATCGTCCGGTGCAACCCAACCGGAAGCTGCGGGTTTCTTCTCCAAGGTCAAGGACTTCTTCGGCT CCCGCGCGAACACTCCCTAA
Upstream 100 bases:
>100_bases CGCTTGCGGACTTCAGGTGGGGGTTGCTTTCGTTGGGCCTGGGACGGCATGAAGAATGCTCGTTCCCTCGAGGGTCAATT GGATCGAGCAGGTTTGACGG
Downstream 100 bases:
>100_bases CCGTCTAACTTGACCCGTTGGGGAGCGCCCTATAGTTGTTCTGTAACAATAATTTGACACTGGGCCAAAATACCTCCCCG GTTTGGTAGCGGAATGGCTT
Product: chaperone protein DnaJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MSTTKRCYYETLEVERSADESTLKSAFRKLAMKWHPDRNPGDASSEIKFKEINEAYEVLKDGDKRAAYDRYGHAAFEQGM GGGGPGFGAGFASSFSDIFEDLFGMAGQRGRGTGRERGADLRYNMEITLEDAYKGKTAQIEIPVSVTCESCSGTGAKAGT KPKTCSTCGGAGRVRQAQGFFTLERTCPSCQGRGQIIEDPCPSCTGSGRVTKERTLSVNIPQGVEDGTRIRLAGEGEAGV RGGPPGDLYIFLSLASHAIFQRDGADLHCRVPISMVTAALGGEFEVPTIERGKTKVKVPSGTQTGRRFRIAGKGMPVLRS RQVGDMYVQVAVETPQNLTKKQQELLAEFEKLSSGATQPEAAGFFSKVKDFFGSRANTP
Sequences:
>Translated_379_residues MSTTKRCYYETLEVERSADESTLKSAFRKLAMKWHPDRNPGDASSEIKFKEINEAYEVLKDGDKRAAYDRYGHAAFEQGM GGGGPGFGAGFASSFSDIFEDLFGMAGQRGRGTGRERGADLRYNMEITLEDAYKGKTAQIEIPVSVTCESCSGTGAKAGT KPKTCSTCGGAGRVRQAQGFFTLERTCPSCQGRGQIIEDPCPSCTGSGRVTKERTLSVNIPQGVEDGTRIRLAGEGEAGV RGGPPGDLYIFLSLASHAIFQRDGADLHCRVPISMVTAALGGEFEVPTIERGKTKVKVPSGTQTGRRFRIAGKGMPVLRS RQVGDMYVQVAVETPQNLTKKQQELLAEFEKLSSGATQPEAAGFFSKVKDFFGSRANTP >Mature_378_residues STTKRCYYETLEVERSADESTLKSAFRKLAMKWHPDRNPGDASSEIKFKEINEAYEVLKDGDKRAAYDRYGHAAFEQGMG GGGPGFGAGFASSFSDIFEDLFGMAGQRGRGTGRERGADLRYNMEITLEDAYKGKTAQIEIPVSVTCESCSGTGAKAGTK PKTCSTCGGAGRVRQAQGFFTLERTCPSCQGRGQIIEDPCPSCTGSGRVTKERTLSVNIPQGVEDGTRIRLAGEGEAGVR GGPPGDLYIFLSLASHAIFQRDGADLHCRVPISMVTAALGGEFEVPTIERGKTKVKVPSGTQTGRRFRIAGKGMPVLRSR QVGDMYVQVAVETPQNLTKKQQELLAEFEKLSSGATQPEAAGFFSKVKDFFGSRANTP
Specific function: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion. Unfolded proteins bind initially to dnaJ; upon
COG id: COG0484
COG function: function code O; DnaJ-class molecular chaperone with C-terminal Zn finger domain
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain
Homologues:
Organism=Homo sapiens, GI205360838, Length=362, Percent_Identity=35.0828729281768, Blast_Score=216, Evalue=2e-56, Organism=Homo sapiens, GI205360840, Length=362, Percent_Identity=35.0828729281768, Blast_Score=216, Evalue=3e-56, Organism=Homo sapiens, GI5031741, Length=378, Percent_Identity=35.1851851851852, Blast_Score=182, Evalue=3e-46, Organism=Homo sapiens, GI4504511, Length=340, Percent_Identity=34.4117647058824, Blast_Score=176, Evalue=3e-44, Organism=Homo sapiens, GI194328760, Length=340, Percent_Identity=32.6470588235294, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI194328758, Length=340, Percent_Identity=32.6470588235294, Blast_Score=166, Evalue=3e-41, Organism=Homo sapiens, GI7706495, Length=367, Percent_Identity=31.6076294277929, Blast_Score=156, Evalue=3e-38, Organism=Homo sapiens, GI194328762, Length=309, Percent_Identity=30.42071197411, Blast_Score=133, Evalue=3e-31, Organism=Homo sapiens, GI6631085, Length=360, Percent_Identity=28.0555555555556, Blast_Score=111, Evalue=9e-25, Organism=Homo sapiens, GI201862518, Length=397, Percent_Identity=26.7002518891688, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI201862587, Length=397, Percent_Identity=26.7002518891688, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI56549115, Length=397, Percent_Identity=26.7002518891688, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI5453690, Length=381, Percent_Identity=25.7217847769029, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI9558755, Length=114, Percent_Identity=45.6140350877193, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI47777312, Length=103, Percent_Identity=49.5145631067961, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI39204547, Length=370, Percent_Identity=23.2432432432432, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI27151736, Length=107, Percent_Identity=44.8598130841121, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI88501736, Length=107, Percent_Identity=44.8598130841121, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI23503241, Length=103, Percent_Identity=43.6893203883495, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI21553335, Length=102, Percent_Identity=42.156862745098, Blast_Score=82, Evalue=8e-16, Organism=Homo sapiens, GI17388799, Length=65, Percent_Identity=55.3846153846154, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI4885495, Length=65, Percent_Identity=55.3846153846154, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI24308127, Length=79, Percent_Identity=44.3037974683544, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI29126218, Length=72, Percent_Identity=47.2222222222222, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI194306642, Length=105, Percent_Identity=42.8571428571429, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI194306640, Length=105, Percent_Identity=42.8571428571429, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI45504382, Length=72, Percent_Identity=43.0555555555556, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI68077168, Length=78, Percent_Identity=47.4358974358974, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI68077166, Length=78, Percent_Identity=47.4358974358974, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI56687498, Length=66, Percent_Identity=46.969696969697, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI1786197, Length=373, Percent_Identity=54.1554959785523, Blast_Score=389, Evalue=1e-109, Organism=Escherichia coli, GI1787235, Length=332, Percent_Identity=32.2289156626506, Blast_Score=154, Evalue=7e-39, Organism=Caenorhabditis elegans, GI17553096, Length=370, Percent_Identity=33.7837837837838, Blast_Score=186, Evalue=1e-47, Organism=Caenorhabditis elegans, GI17553098, Length=370, Percent_Identity=33.7837837837838, Blast_Score=186, Evalue=1e-47, Organism=Caenorhabditis elegans, GI17507263, Length=351, Percent_Identity=33.048433048433, Blast_Score=143, Evalue=1e-34, Organism=Caenorhabditis elegans, GI212645553, Length=359, Percent_Identity=32.8690807799443, Blast_Score=129, Evalue=3e-30, Organism=Caenorhabditis elegans, GI17534355, Length=391, Percent_Identity=25.5754475703325, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17563890, Length=231, Percent_Identity=29.8701298701299, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI115532378, Length=94, Percent_Identity=45.7446808510638, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17554644, Length=93, Percent_Identity=47.3118279569892, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17554874, Length=99, Percent_Identity=42.4242424242424, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI86563276, Length=103, Percent_Identity=40.7766990291262, Blast_Score=69, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17538236, Length=110, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324265, Length=347, Percent_Identity=34.8703170028818, Blast_Score=183, Evalue=4e-47, Organism=Saccharomyces cerevisiae, GI6321094, Length=403, Percent_Identity=32.7543424317618, Blast_Score=141, Evalue=2e-34, Organism=Saccharomyces cerevisiae, GI6323119, Length=393, Percent_Identity=30.2798982188295, Blast_Score=140, Evalue=4e-34, Organism=Saccharomyces cerevisiae, GI6323870, Length=358, Percent_Identity=30.7262569832402, Blast_Score=133, Evalue=4e-32, Organism=Saccharomyces cerevisiae, GI6324252, Length=437, Percent_Identity=26.3157894736842, Blast_Score=92, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6323813, Length=132, Percent_Identity=37.8787878787879, Blast_Score=74, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6322194, Length=93, Percent_Identity=43.010752688172, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324321, Length=67, Percent_Identity=50.7462686567164, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324103, Length=83, Percent_Identity=43.3734939759036, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI45552813, Length=370, Percent_Identity=31.8918918918919, Blast_Score=169, Evalue=2e-42, Organism=Drosophila melanogaster, GI45549272, Length=370, Percent_Identity=31.8918918918919, Blast_Score=169, Evalue=2e-42, Organism=Drosophila melanogaster, GI45552811, Length=370, Percent_Identity=31.3513513513514, Blast_Score=169, Evalue=3e-42, Organism=Drosophila melanogaster, GI24646562, Length=347, Percent_Identity=34.5821325648415, Blast_Score=164, Evalue=9e-41, Organism=Drosophila melanogaster, GI24646560, Length=347, Percent_Identity=34.5821325648415, Blast_Score=164, Evalue=9e-41, Organism=Drosophila melanogaster, GI24646558, Length=347, Percent_Identity=34.5821325648415, Blast_Score=164, Evalue=9e-41, Organism=Drosophila melanogaster, GI24646556, Length=347, Percent_Identity=34.5821325648415, Blast_Score=164, Evalue=9e-41, Organism=Drosophila melanogaster, GI21357547, Length=347, Percent_Identity=34.5821325648415, Blast_Score=164, Evalue=9e-41, Organism=Drosophila melanogaster, GI20129487, Length=338, Percent_Identity=34.3195266272189, Blast_Score=159, Evalue=4e-39, Organism=Drosophila melanogaster, GI24584014, Length=338, Percent_Identity=34.3195266272189, Blast_Score=159, Evalue=4e-39, Organism=Drosophila melanogaster, GI19920464, Length=354, Percent_Identity=30.7909604519774, Blast_Score=141, Evalue=9e-34, Organism=Drosophila melanogaster, GI85726398, Length=361, Percent_Identity=27.7008310249307, Blast_Score=118, Evalue=5e-27, Organism=Drosophila melanogaster, GI28574949, Length=360, Percent_Identity=25.2777777777778, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI18858081, Length=353, Percent_Identity=26.628895184136, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24654066, Length=78, Percent_Identity=51.2820512820513, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI24654070, Length=78, Percent_Identity=51.2820512820513, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI24654068, Length=78, Percent_Identity=51.2820512820513, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI24654072, Length=78, Percent_Identity=51.2820512820513, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI24762799, Length=110, Percent_Identity=38.1818181818182, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI161077138, Length=63, Percent_Identity=53.968253968254, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI17737735, Length=72, Percent_Identity=43.0555555555556, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24668523, Length=72, Percent_Identity=43.0555555555556, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI28574723, Length=72, Percent_Identity=43.0555555555556, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24658562, Length=181, Percent_Identity=30.3867403314917, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24658555, Length=181, Percent_Identity=30.3867403314917, Blast_Score=73, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DNAJ_RHOP2 (Q2J319)
Other databases:
- EMBL: CP000250 - RefSeq: YP_484052.1 - ProteinModelPortal: Q2J319 - STRING: Q2J319 - GeneID: 3909986 - GenomeReviews: CP000250_GR - KEGG: rpb:RPB_0430 - eggNOG: COG0484 - HOGENOM: HBG635315 - OMA: FEHGGMG - ProtClustDB: PRK10767 - BioCyc: RPAL316058:RPB_0430-MONOMER - GO: GO:0005737 - HAMAP: MF_01152 - InterPro: IPR012724 - InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 - InterPro: IPR001305 - Gene3D: G3DSA:1.10.287.110 - Gene3D: G3DSA:2.10.230.10 - PANTHER: PTHR11821 - PRINTS: PR00625 - SMART: SM00271 - TIGRFAMs: TIGR02349
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C; PF00684 DnaJ_CXXCXGXG; SSF46565 DnaJ_N; SSF49493 HSP40_DnaJ_pep; SSF57938 HSP_DnaJ_cys-rich
EC number: NA
Molecular weight: Translated: 40838; Mature: 40707
Theoretical pI: Translated: 8.54; Mature: 8.54
Prosite motif: PS00636 DNAJ_1; PS50076 DNAJ_2; PS51188 ZF_CR; PS00637 DNAJ_CXXCXGXG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTKRCYYETLEVERSADESTLKSAFRKLAMKWHPDRNPGDASSEIKFKEINEAYEVLK CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHH DGDKRAAYDRYGHAAFEQGMGGGGPGFGAGFASSFSDIFEDLFGMAGQRGRGTGRERGAD CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC LRYNMEITLEDAYKGKTAQIEIPVSVTCESCSGTGAKAGTKPKTCSTCGGAGRVRQAQGF EEEEEEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC FTLERTCPSCQGRGQIIEDPCPSCTGSGRVTKERTLSVNIPQGVEDGTRIRLAGEGEAGV EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCCCCCCCCEEEEECCCCCCC RGGPPGDLYIFLSLASHAIFQRDGADLHCRVPISMVTAALGGEFEVPTIERGKTKVKVPS CCCCCCCEEEEEEHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEECCC GTQTGRRFRIAGKGMPVLRSRQVGDMYVQVAVETPQNLTKKQQELLAEFEKLSSGATQPE CCCCCCEEEEECCCCCHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCH AAGFFSKVKDFFGSRANTP HHHHHHHHHHHHCCCCCCC >Mature Secondary Structure STTKRCYYETLEVERSADESTLKSAFRKLAMKWHPDRNPGDASSEIKFKEINEAYEVLK CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHH DGDKRAAYDRYGHAAFEQGMGGGGPGFGAGFASSFSDIFEDLFGMAGQRGRGTGRERGAD CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC LRYNMEITLEDAYKGKTAQIEIPVSVTCESCSGTGAKAGTKPKTCSTCGGAGRVRQAQGF EEEEEEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC FTLERTCPSCQGRGQIIEDPCPSCTGSGRVTKERTLSVNIPQGVEDGTRIRLAGEGEAGV EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCCCCCCCCEEEEECCCCCCC RGGPPGDLYIFLSLASHAIFQRDGADLHCRVPISMVTAALGGEFEVPTIERGKTKVKVPS CCCCCCCEEEEEEHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEECCC GTQTGRRFRIAGKGMPVLRSRQVGDMYVQVAVETPQNLTKKQQELLAEFEKLSSGATQPE CCCCCCEEEEECCCCCHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCH AAGFFSKVKDFFGSRANTP HHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA