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The map label for this gene is secB

Identifier: 86747525

GI number: 86747525

Start: 443737

End: 444213

Strand: Reverse

Name: secB

Synonym: RPB_0399

Alternate gene names: 86747525

Gene position: 444213-443737 (Counterclockwise)

Preceding gene: 86747529

Following gene: 86747520

Centisome position: 8.33

GC content: 66.46

Gene sequence:

>477_bases
ATGACCAACGGAAACGGCACGCCTCCGGAAGCCGCCGCTCCGCCGCAGCTCAACGTGCTGGCGCAGTACACCAAGGATCT
GTCGTTCGAGAACCCGAACGCCCCGGCGTCGCTGGCCCCGCAGCAGAGCCAGCCGGCGATCAACATCCAGATCAATGTCG
GCGCCAACAACCTCGCCGAGAACGAGTTCGAGGTGACGCTGTCGATCGAGGGCAAGGCCGAATCCGGCAGCACCGTGCTG
TTCAGCTTCGAGCTCGCCTATGCGGGCGTGTTCCGGATCGTCAACGTGCCGCAGGAGAATCTGCACCCGCTGATCATGAT
CGAATGCCCCCGGCTGCTGTTCCCGTTCGCCCGCGAGATCATCGCCAGCGCGGTCCGCGACGGCGGCTTCCCGCCGCTGA
TGCTCGACCCGGTCGACTTCGTCGGCCTGTACCGCCAGAACCTCGAGCGCGCCCAGCAGCAGGGCCAGCCGAGCTGA

Upstream 100 bases:

>100_bases
GGGCCTATGATAGCCACTCGCCGATACAATCACCCGCCCCTCGCGCGAAGGCCGCCGCATCACCGGCCGGAGCTTCCCGC
ACGCTTCAGGAGAGATTTCG

Downstream 100 bases:

>100_bases
TTCTCGGCTCGAACTGAGATCTGAAACGTCGTGATGGCCAGGCTTGTCCCGGCCATTGACGTTTTCAGGGTGGATGCATC
GAGACGGGAATGCCCGGGAC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTNGNGTPPEAAAPPQLNVLAQYTKDLSFENPNAPASLAPQQSQPAINIQINVGANNLAENEFEVTLSIEGKAESGSTVL
FSFELAYAGVFRIVNVPQENLHPLIMIECPRLLFPFAREIIASAVRDGGFPPLMLDPVDFVGLYRQNLERAQQQGQPS

Sequences:

>Translated_158_residues
MTNGNGTPPEAAAPPQLNVLAQYTKDLSFENPNAPASLAPQQSQPAINIQINVGANNLAENEFEVTLSIEGKAESGSTVL
FSFELAYAGVFRIVNVPQENLHPLIMIECPRLLFPFAREIIASAVRDGGFPPLMLDPVDFVGLYRQNLERAQQQGQPS
>Mature_157_residues
TNGNGTPPEAAAPPQLNVLAQYTKDLSFENPNAPASLAPQQSQPAINIQINVGANNLAENEFEVTLSIEGKAESGSTVLF
SFELAYAGVFRIVNVPQENLHPLIMIECPRLLFPFAREIIASAVRDGGFPPLMLDPVDFVGLYRQNLERAQQQGQPS

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=133, Percent_Identity=35.3383458646617, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_RHOP2 (Q2J350)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_484021.1
- ProteinModelPortal:   Q2J350
- SMR:   Q2J350
- STRING:   Q2J350
- GeneID:   3908837
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_0399
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- BioCyc:   RPAL316058:RPB_0399-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17133; Mature: 17001

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNGNGTPPEAAAPPQLNVLAQYTKDLSFENPNAPASLAPQQSQPAINIQINVGANNLAE
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
NEFEVTLSIEGKAESGSTVLFSFELAYAGVFRIVNVPQENLHPLIMIECPRLLFPFAREI
CEEEEEEEEECCCCCCCEEEEEEHHHHHHHHHEECCCHHHCCEEEEEECCHHHHHHHHHH
IASAVRDGGFPPLMLDPVDFVGLYRQNLERAQQQGQPS
HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TNGNGTPPEAAAPPQLNVLAQYTKDLSFENPNAPASLAPQQSQPAINIQINVGANNLAE
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
NEFEVTLSIEGKAESGSTVLFSFELAYAGVFRIVNVPQENLHPLIMIECPRLLFPFAREI
CEEEEEEEEECCCCCCCEEEEEEHHHHHHHHHEECCCHHHCCEEEEEECCHHHHHHHHHH
IASAVRDGGFPPLMLDPVDFVGLYRQNLERAQQQGQPS
HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA