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The map label for this gene is yqcB [C]

Identifier: 86747487

GI number: 86747487

Start: 403466

End: 404368

Strand: Reverse

Name: yqcB [C]

Synonym: RPB_0361

Alternate gene names: 86747487

Gene position: 404368-403466 (Counterclockwise)

Preceding gene: 86747490

Following gene: 86747484

Centisome position: 7.58

GC content: 69.55

Gene sequence:

>903_bases
ATGAACGAAAGCCACACCGATCAATTCGACGTGCCGGAACTGTCGGCGGAGGACATTCAGTCGCGGGTGCTGCATCGCGA
CGGGCTGATGCTGGTGATCGACAAGCCGCCCGGCCTGCCGGTGCATCGCGGCCCGAAGGGCGGGCCCAATCTGGAAACCT
CGTTCGAGTTCCTGCGGTTCGGCCTGCCGCGCCCGCCGGTGCTGGCGCATCGGCTCGACCGCGACACCTCCGGCTGTCTG
GTGCTCGGCCGCCACCGCAAGGCCACCGCCACGCTGGGGCTGCTGTTCAAGCACAGCAAGATTTCCAAGACCTATTGGGC
GATCGTGGAGGGCGGGCCTCTGGAGGACCAGGGCACCATCGACCTGCCGATCGGCCGCCTCAACGCCGAGCGCGGCTGGT
GGCAGAAGATCGATCCGGAAGGCCTGCCGTCGCTGACGAAATGGACGGTGCTGGGGAGGTCCTTCTCCCCTCCCCCTTGC
GGGGCGGGAGCCTGCCCCGGACTTGATCCGGGGGCGGGGGTCGACAACGGGAGCCTCGCTTCGGGGCACCCTCACCCCAA
CCCTCTCCCGCAAGCGGGAGAGGGGGCTCGCAGTGCTGGGGGCGCTGCTGCGGCCTCATCTCCGGCGCAGGCAGAAGACC
CGCCGCCTCTCACCTGGCTCGCGCTGGAGCCGATCACCGGGCGGACGCATCAATTGCGGGTGCATTGTGCGGCGATGGGC
TGGCCGATCTTCGGCGACAACATCTACGGCAACGGCCCGCGCTTCGGCGAGCCGAAGTTGCATCTGCACGCCCGCGAGAT
CACCATCCCGCTGTCGCGCAACAAGCCGCCGGTGGTGGTGACGGCGCCGCCGCCGCCGCACATGCATCCGCGGCTGGCGG
CCTGCGGGTGGACGGGCGTGTAG

Upstream 100 bases:

>100_bases
CGACGTGCGCTTCAGTCCGCTGGACAGCCGCCGCCACCAGCTCGGTTTCGCATTTTCCGGAGTGTCACTCATCAGGGCGC
TGTGTTAGCCGTTTCGCGTC

Downstream 100 bases:

>100_bases
TTCGAAGTGGTTAGTACGAGGACCAACCGTCATCCCCGCGAAGGCGGGGATCCAGTATTCCAGGGCGCTGCTAGTTACTA
ACAGACGGCTGCTCTGGGAT

Product: pseudouridine synthase

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNESHTDQFDVPELSAEDIQSRVLHRDGLMLVIDKPPGLPVHRGPKGGPNLETSFEFLRFGLPRPPVLAHRLDRDTSGCL
VLGRHRKATATLGLLFKHSKISKTYWAIVEGGPLEDQGTIDLPIGRLNAERGWWQKIDPEGLPSLTKWTVLGRSFSPPPC
GAGACPGLDPGAGVDNGSLASGHPHPNPLPQAGEGARSAGGAAAASSPAQAEDPPPLTWLALEPITGRTHQLRVHCAAMG
WPIFGDNIYGNGPRFGEPKLHLHAREITIPLSRNKPPVVVTAPPPPHMHPRLAACGWTGV

Sequences:

>Translated_300_residues
MNESHTDQFDVPELSAEDIQSRVLHRDGLMLVIDKPPGLPVHRGPKGGPNLETSFEFLRFGLPRPPVLAHRLDRDTSGCL
VLGRHRKATATLGLLFKHSKISKTYWAIVEGGPLEDQGTIDLPIGRLNAERGWWQKIDPEGLPSLTKWTVLGRSFSPPPC
GAGACPGLDPGAGVDNGSLASGHPHPNPLPQAGEGARSAGGAAAASSPAQAEDPPPLTWLALEPITGRTHQLRVHCAAMG
WPIFGDNIYGNGPRFGEPKLHLHAREITIPLSRNKPPVVVTAPPPPHMHPRLAACGWTGV
>Mature_300_residues
MNESHTDQFDVPELSAEDIQSRVLHRDGLMLVIDKPPGLPVHRGPKGGPNLETSFEFLRFGLPRPPVLAHRLDRDTSGCL
VLGRHRKATATLGLLFKHSKISKTYWAIVEGGPLEDQGTIDLPIGRLNAERGWWQKIDPEGLPSLTKWTVLGRSFSPPPC
GAGACPGLDPGAGVDNGSLASGHPHPNPLPQAGEGARSAGGAAAASSPAQAEDPPPLTWLALEPITGRTHQLRVHCAAMG
WPIFGDNIYGNGPRFGEPKLHLHAREITIPLSRNKPPVVVTAPPPPHMHPRLAACGWTGV

Specific function: Unknown

COG id: COG0564

COG function: function code J; Pseudouridylate synthases, 23S RNA-specific

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pseudouridine synthase rluA family [H]

Homologues:

Organism=Homo sapiens, GI221316663, Length=288, Percent_Identity=26.3888888888889, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI221316667, Length=259, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006224
- InterPro:   IPR006145 [H]

Pfam domain/function: PF00849 PseudoU_synth_2 [H]

EC number: NA

Molecular weight: Translated: 32076; Mature: 32076

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS01129 PSI_RLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNESHTDQFDVPELSAEDIQSRVLHRDGLMLVIDKPPGLPVHRGPKGGPNLETSFEFLRF
CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
GLPRPPVLAHRLDRDTSGCLVLGRHRKATATLGLLFKHSKISKTYWAIVEGGPLEDQGTI
CCCCCCHHHHHHCCCCCCEEEEECCCCHHHHEEEEEECCCCCCEEEEEEECCCCCCCCEE
DLPIGRLNAERGWWQKIDPEGLPSLTKWTVLGRSFSPPPCGAGACPGLDPGAGVDNGSLA
ECCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGHPHPNPLPQAGEGARSAGGAAAASSPAQAEDPPPLTWLALEPITGRTHQLRVHCAAMG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEC
WPIFGDNIYGNGPRFGEPKLHLHAREITIPLSRNKPPVVVTAPPPPHMHPRLAACGWTGV
CCEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MNESHTDQFDVPELSAEDIQSRVLHRDGLMLVIDKPPGLPVHRGPKGGPNLETSFEFLRF
CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
GLPRPPVLAHRLDRDTSGCLVLGRHRKATATLGLLFKHSKISKTYWAIVEGGPLEDQGTI
CCCCCCHHHHHHCCCCCCEEEEECCCCHHHHEEEEEECCCCCCEEEEEEECCCCCCCCEE
DLPIGRLNAERGWWQKIDPEGLPSLTKWTVLGRSFSPPPCGAGACPGLDPGAGVDNGSLA
ECCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SGHPHPNPLPQAGEGARSAGGAAAASSPAQAEDPPPLTWLALEPITGRTHQLRVHCAAMG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEC
WPIFGDNIYGNGPRFGEPKLHLHAREITIPLSRNKPPVVVTAPPPPHMHPRLAACGWTGV
CCEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9515924 [H]