| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is ybbP [H]
Identifier: 86747412
GI number: 86747412
Start: 322418
End: 325000
Strand: Direct
Name: ybbP [H]
Synonym: RPB_0286
Alternate gene names: 86747412
Gene position: 322418-325000 (Clockwise)
Preceding gene: 86747411
Following gene: 86747413
Centisome position: 6.05
GC content: 69.8
Gene sequence:
>2583_bases ATGACGCTGGTCGCCGATCCGCTCGCCAGATCCGCGCCGCCGTCGCGCGGCTGGTCGCTGCCGTTGCGCTATGCGTTGCG CGAGATGCGCGGCGGTCTCAACGGCTTCTACGTCTTCATCGCCTGCATCGCGCTCGGCGTGATGGCGATCGCCGGGGTCG GCTCGGTCGCCGCCAGCCTCGGCGAAGGCCTCGCCCGCGAAGGCCGCACCCTGCTCGGCGGCGATGTCGCGTTCTCGCTG ATCCAGCGCGAGGCGACGCCGCAAGAACTCGGCTATCTGCGCGACCGCGCGCCGGTCTCGGTCGCGGCATCGATGCGGGG CATGGCGCGCACCGCCGAAGGCGCCTCGGCGCTGGTCGAGATCAAGGCGGTCGACAGCCTGTATCCGATGCTCGGCGAAT TGAAGCTCGATCCGCCGCTGCCGCTCGCCGACGTGCTGGCGAAGCGCGACGGCGCGTTCGGCGCCGCCGCCGACGCCGCG TTTCTCGCCCGGCTCGACCTCAAGATCGGCGACCGCGTCAGTGTCGGCAGCGCCGCGTTCCAGATCCGCAGCGTGGTCGC CTCCGAGCCCGACAAGCTCGCCGGCAATCCCGGCTTCGGACCGCGCTTCCTGATCAGTGAGGACGCATTGCGCGCCACGC AATTGCTGCAGCCCGGCAGCCTGGTGCGCTGGATCTATCGCGTCCGGCTGCCCGACAACCGCGCCGACGACAAGGCGGCG CAGGATTTCGCCGACGCCACCCGCGCGGCGCTGCCGCAGGCCGGCTGGGAAATCCGCAGCCGCGGCAACGCTTCGCCACA GCTCGAGCGCACCATCACCCGCTTCACCCAGTTCCTGACACTGGTCGGCCTCGCCGCGCTGCTGGTCGGCGGCGTCGGCG TCGCCAACGCGGTCAAGAGCCACATCGACCGCCGCCGCGACGTGATCGCATCGTTGAAAGCGCTCGGCGCCACCGGCCGC GACGTGTTCGCGATCTATCTGACCCAGGTGTTGGTGCTGGCGACGATCGGCTCGCTGATCGGGCTCGCGCTCGGCGCGGC GCTGCCGTTTCTGATCGTCGGCGCGTTCGGCACATTGCTGCCGCTGCCGGTGGTGGCGGCGCTGCATCCCGGGGAGCTGA TTCTGTCGCTGGTCTACGGCCTTTTGACCGCACTCGCCTTCGGGCTGTGGCCGCTGGCGCAAGTGCGCGATGTGCCGGTG GCGACGCTGTTCCGCGAAGCCGCGACCGCGGATGCGCATCGGCCGAGCCTGCGGCACATCGTCTGGATCGGCGCGGTGAT CGCGCTGCTACTCGCGGTGGTGATCGGGCTGGCTTACGACAAGCGCGTCGCGATCGCCTTCGTGGTCGCTGCGGTGCTGG TGTTCCTGCTGCTGCGCGGCGTCGCGGCGGGGCTGATGGCGATCGCACGGCGGCTGCCGCGCTCGCGCATCACCATGCTG CGGCTGGCGATCGCCAACATCCACCGCCCGGGCGCGCTGACCCCGTCGGTGGTGCTGTCGCTCGGCCTCGGCCTCTCGGT GCTGGTGACGATCGCGCAGATCGACGGCAATCTGCGGCGGCAATTCCTCGCCGCGCTGCCCGAAAGGGCGCCGACGTTCT TCTTCATCGACATCCCGTCGAGCGAGACCGAGCAATTCGGCGCCTTCCTGAAACAGGCTGCGCCGAACGCCACGGTCGAG GACGTGCCGATGCTGCGCGGCCGGATTGTCGCCGCGCGCGGCGTCCGCGCCGAGGATCTCAAGCCGGGGCAGGACGCCGA ATGGGTGCTGCAGAGCGACCGCGGCCTGACCTATGCGGCCGAGATGCCACCCGGCTCCAAGGTCGTCGAAGGCCATTGGT GGCCCAAGGATTACGACGGCAAGCCGCTCGTATCGTTCGAGAAAAAACTGGCCGACGGGCTCGGCCTGAAGATCGGCGAC GAGGTCACCGTCAACGTCCTCGGCCGCGAACTCACTGCGACCATCAGCAATCTGCGCAGCGTCGACTGGCAGAGCCTCGG CATCAATTTCGTGCTGGTGTTCTCGCCCAATACGTTTCGTGGCGCGCCGCACACCCATATCGCCACCCTGACCGAACACG GCAGCACGACAGAGAGCGACGCGGCCCTGATCAAGCAGGTGGCCGACAGATTCCCGATGGTGACCAGCGTCCGCGTCCGC GAAGCGCTCGAGACCGTCGGCGGCGTGGTCGGCAATCTGGCGCTGGCGGTGCGGGGCGCCAGCTCGGTGACGCTGATCTC GGCGATCCTGGTGCTGGGCGGCGCACTCGCCGCCGGCCACCGCCACCGCGTCTATGACGCCGTGATCCTGAAAACGCTCG GGGCCACCCGCGGCCGGCTGATCGGGGCCTTCGCGCTCGAATACATGATGATCGGGCTCGCCACCGCGGTGTTTGGGGTG ATCGCCGGCTCCGCCGCCGCGTGGCTGATTGTCACACGACTGATGTCGCTGAGCTTCGCCTGGCAGGCCGGCTCCGCCGC CGGCGTGGTGGTGGCCGCCCTGGTGGTGACGGTCGGCCTCGGCCTGGTGGGGACGCTGCTGGCGCTGAACCAGAAGCCCG CCTCCGTCCTGCGGAATCTGTAG
Upstream 100 bases:
>100_bases CACCGCGCTGGCGCAGCGTTGCGACCGCGTCGTCCGGCTGCGCTCCGGGCGGGTCGACACCACGATGCCGGGCAATGCCC GGGCACGATCGGCCTGAGCC
Downstream 100 bases:
>100_bases CCTGCGATTGGCGGAACGCCTGATTGGGGAAATCTCGATCGAAGGCTGGCGTGGCGGGTCCGGCGCGGCACTGCCGGCGC CGGAAACCGCGGCGATTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 860; Mature: 859
Protein sequence:
>860_residues MTLVADPLARSAPPSRGWSLPLRYALREMRGGLNGFYVFIACIALGVMAIAGVGSVAASLGEGLAREGRTLLGGDVAFSL IQREATPQELGYLRDRAPVSVAASMRGMARTAEGASALVEIKAVDSLYPMLGELKLDPPLPLADVLAKRDGAFGAAADAA FLARLDLKIGDRVSVGSAAFQIRSVVASEPDKLAGNPGFGPRFLISEDALRATQLLQPGSLVRWIYRVRLPDNRADDKAA QDFADATRAALPQAGWEIRSRGNASPQLERTITRFTQFLTLVGLAALLVGGVGVANAVKSHIDRRRDVIASLKALGATGR DVFAIYLTQVLVLATIGSLIGLALGAALPFLIVGAFGTLLPLPVVAALHPGELILSLVYGLLTALAFGLWPLAQVRDVPV ATLFREAATADAHRPSLRHIVWIGAVIALLLAVVIGLAYDKRVAIAFVVAAVLVFLLLRGVAAGLMAIARRLPRSRITML RLAIANIHRPGALTPSVVLSLGLGLSVLVTIAQIDGNLRRQFLAALPERAPTFFFIDIPSSETEQFGAFLKQAAPNATVE DVPMLRGRIVAARGVRAEDLKPGQDAEWVLQSDRGLTYAAEMPPGSKVVEGHWWPKDYDGKPLVSFEKKLADGLGLKIGD EVTVNVLGRELTATISNLRSVDWQSLGINFVLVFSPNTFRGAPHTHIATLTEHGSTTESDAALIKQVADRFPMVTSVRVR EALETVGGVVGNLALAVRGASSVTLISAILVLGGALAAGHRHRVYDAVILKTLGATRGRLIGAFALEYMMIGLATAVFGV IAGSAAAWLIVTRLMSLSFAWQAGSAAGVVVAALVVTVGLGLVGTLLALNQKPASVLRNL
Sequences:
>Translated_860_residues MTLVADPLARSAPPSRGWSLPLRYALREMRGGLNGFYVFIACIALGVMAIAGVGSVAASLGEGLAREGRTLLGGDVAFSL IQREATPQELGYLRDRAPVSVAASMRGMARTAEGASALVEIKAVDSLYPMLGELKLDPPLPLADVLAKRDGAFGAAADAA FLARLDLKIGDRVSVGSAAFQIRSVVASEPDKLAGNPGFGPRFLISEDALRATQLLQPGSLVRWIYRVRLPDNRADDKAA QDFADATRAALPQAGWEIRSRGNASPQLERTITRFTQFLTLVGLAALLVGGVGVANAVKSHIDRRRDVIASLKALGATGR DVFAIYLTQVLVLATIGSLIGLALGAALPFLIVGAFGTLLPLPVVAALHPGELILSLVYGLLTALAFGLWPLAQVRDVPV ATLFREAATADAHRPSLRHIVWIGAVIALLLAVVIGLAYDKRVAIAFVVAAVLVFLLLRGVAAGLMAIARRLPRSRITML RLAIANIHRPGALTPSVVLSLGLGLSVLVTIAQIDGNLRRQFLAALPERAPTFFFIDIPSSETEQFGAFLKQAAPNATVE DVPMLRGRIVAARGVRAEDLKPGQDAEWVLQSDRGLTYAAEMPPGSKVVEGHWWPKDYDGKPLVSFEKKLADGLGLKIGD EVTVNVLGRELTATISNLRSVDWQSLGINFVLVFSPNTFRGAPHTHIATLTEHGSTTESDAALIKQVADRFPMVTSVRVR EALETVGGVVGNLALAVRGASSVTLISAILVLGGALAAGHRHRVYDAVILKTLGATRGRLIGAFALEYMMIGLATAVFGV IAGSAAAWLIVTRLMSLSFAWQAGSAAGVVVAALVVTVGLGLVGTLLALNQKPASVLRNL >Mature_859_residues TLVADPLARSAPPSRGWSLPLRYALREMRGGLNGFYVFIACIALGVMAIAGVGSVAASLGEGLAREGRTLLGGDVAFSLI QREATPQELGYLRDRAPVSVAASMRGMARTAEGASALVEIKAVDSLYPMLGELKLDPPLPLADVLAKRDGAFGAAADAAF LARLDLKIGDRVSVGSAAFQIRSVVASEPDKLAGNPGFGPRFLISEDALRATQLLQPGSLVRWIYRVRLPDNRADDKAAQ DFADATRAALPQAGWEIRSRGNASPQLERTITRFTQFLTLVGLAALLVGGVGVANAVKSHIDRRRDVIASLKALGATGRD VFAIYLTQVLVLATIGSLIGLALGAALPFLIVGAFGTLLPLPVVAALHPGELILSLVYGLLTALAFGLWPLAQVRDVPVA TLFREAATADAHRPSLRHIVWIGAVIALLLAVVIGLAYDKRVAIAFVVAAVLVFLLLRGVAAGLMAIARRLPRSRITMLR LAIANIHRPGALTPSVVLSLGLGLSVLVTIAQIDGNLRRQFLAALPERAPTFFFIDIPSSETEQFGAFLKQAAPNATVED VPMLRGRIVAARGVRAEDLKPGQDAEWVLQSDRGLTYAAEMPPGSKVVEGHWWPKDYDGKPLVSFEKKLADGLGLKIGDE VTVNVLGRELTATISNLRSVDWQSLGINFVLVFSPNTFRGAPHTHIATLTEHGSTTESDAALIKQVADRFPMVTSVRVRE ALETVGGVVGNLALAVRGASSVTLISAILVLGGALAAGHRHRVYDAVILKTLGATRGRLIGAFALEYMMIGLATAVFGVI AGSAAAWLIVTRLMSLSFAWQAGSAAGVVVAALVVTVGLGLVGTLLALNQKPASVLRNL
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=818, Percent_Identity=26.4058679706601, Blast_Score=185, Evalue=1e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 90684; Mature: 90553
Theoretical pI: Translated: 10.45; Mature: 10.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLVADPLARSAPPSRGWSLPLRYALREMRGGLNGFYVFIACIALGVMAIAGVGSVAASL CCCCCCCHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GEGLAREGRTLLGGDVAFSLIQREATPQELGYLRDRAPVSVAASMRGMARTAEGASALVE HHHHHHCCCEEECHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH IKAVDSLYPMLGELKLDPPLPLADVLAKRDGAFGAAADAAFLARLDLKIGDRVSVGSAAF HHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH QIRSVVASEPDKLAGNPGFGPRFLISEDALRATQLLQPGSLVRWIYRVRLPDNRADDKAA HHHHHHHCCCHHCCCCCCCCCCEEECHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHH QDFADATRAALPQAGWEIRSRGNASPQLERTITRFTQFLTLVGLAALLVGGVGVANAVKS HHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH HIDRRRDVIASLKALGATGRDVFAIYLTQVLVLATIGSLIGLALGAALPFLIVGAFGTLL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLPVVAALHPGELILSLVYGLLTALAFGLWPLAQVRDVPVATLFREAATADAHRPSLRHI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHH VWIGAVIALLLAVVIGLAYDKRVAIAFVVAAVLVFLLLRGVAAGLMAIARRLPRSRITML HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH RLAIANIHRPGALTPSVVLSLGLGLSVLVTIAQIDGNLRRQFLAALPERAPTFFFIDIPS HHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEECCC SETEQFGAFLKQAAPNATVEDVPMLRGRIVAARGVRAEDLKPGQDAEWVLQSDRGLTYAA CCHHHHHHHHHHCCCCCCHHHHHHHHCEEHHHCCCCCCCCCCCCCHHHHEECCCCCEEEE EMPPGSKVVEGHWWPKDYDGKPLVSFEKKLADGLGLKIGDEVTVNVLGRELTATISNLRS CCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHC VDWQSLGINFVLVFSPNTFRGAPHTHIATLTEHGSTTESDAALIKQVADRFPMVTSVRVR CCHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHH EALETVGGVVGNLALAVRGASSVTLISAILVLGGALAAGHRHRVYDAVILKTLGATRGRL HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH IGAFALEYMMIGLATAVFGVIAGSAAAWLIVTRLMSLSFAWQAGSAAGVVVAALVVTVGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH GLVGTLLALNQKPASVLRNL HHHHHHHHHCCCHHHHHCCC >Mature Secondary Structure TLVADPLARSAPPSRGWSLPLRYALREMRGGLNGFYVFIACIALGVMAIAGVGSVAASL CCCCCCHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GEGLAREGRTLLGGDVAFSLIQREATPQELGYLRDRAPVSVAASMRGMARTAEGASALVE HHHHHHCCCEEECHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH IKAVDSLYPMLGELKLDPPLPLADVLAKRDGAFGAAADAAFLARLDLKIGDRVSVGSAAF HHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH QIRSVVASEPDKLAGNPGFGPRFLISEDALRATQLLQPGSLVRWIYRVRLPDNRADDKAA HHHHHHHCCCHHCCCCCCCCCCEEECHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHH QDFADATRAALPQAGWEIRSRGNASPQLERTITRFTQFLTLVGLAALLVGGVGVANAVKS HHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH HIDRRRDVIASLKALGATGRDVFAIYLTQVLVLATIGSLIGLALGAALPFLIVGAFGTLL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLPVVAALHPGELILSLVYGLLTALAFGLWPLAQVRDVPVATLFREAATADAHRPSLRHI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHH VWIGAVIALLLAVVIGLAYDKRVAIAFVVAAVLVFLLLRGVAAGLMAIARRLPRSRITML HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH RLAIANIHRPGALTPSVVLSLGLGLSVLVTIAQIDGNLRRQFLAALPERAPTFFFIDIPS HHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEECCC SETEQFGAFLKQAAPNATVEDVPMLRGRIVAARGVRAEDLKPGQDAEWVLQSDRGLTYAA CCHHHHHHHHHHCCCCCCHHHHHHHHCEEHHHCCCCCCCCCCCCCHHHHEECCCCCEEEE EMPPGSKVVEGHWWPKDYDGKPLVSFEKKLADGLGLKIGDEVTVNVLGRELTATISNLRS CCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHC VDWQSLGINFVLVFSPNTFRGAPHTHIATLTEHGSTTESDAALIKQVADRFPMVTSVRVR CCHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHH EALETVGGVVGNLALAVRGASSVTLISAILVLGGALAAGHRHRVYDAVILKTLGATRGRL HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH IGAFALEYMMIGLATAVFGVIAGSAAAWLIVTRLMSLSFAWQAGSAAGVVVAALVVTVGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH GLVGTLLALNQKPASVLRNL HHHHHHHHHCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]