| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is pheT [H]
Identifier: 86747174
GI number: 86747174
Start: 46160
End: 48568
Strand: Direct
Name: pheT [H]
Synonym: RPB_0047
Alternate gene names: 86747174
Gene position: 46160-48568 (Clockwise)
Preceding gene: 86747173
Following gene: 86747176
Centisome position: 0.87
GC content: 68.74
Gene sequence:
>2409_bases ATGAAACTCACCCTCTCCTGGCTGAAAGACCATCTCGACACCGACGAGCAGCTCGACGCGCTCGCCGACAAGCTCACCAT GATCGGGCTCGAGGTCGAGGGCATCGAAGACAAGGCCAAGGCGCTGGCGCCGTTCACCATCGCCTTGGTGCTGACCGCCG AGAAGCATCCCAACGCCGACAAGCTGCAGGTCTGCAGCGTCGACACCGGCGCGGGCGCGCCCGTGCAGGTGGTGTGCGGC GCCCCGAATGCGCGCGCCGGCCTCGTCACCGTGTTCGCGCCGCCCGGCACCTTCATTCCGGCCAAGGCCATCACGCTGGG CATCGGCAACATCCGCGGCGTCGAGAGCCGCGGCATGCTGTGCTCGGCCGCCGAGCTTGAGCTCTCCGAGGACCACGACG GCATCATCGAGCTGCCGGCGGATGCGCCGATCGGCCAGGGCTTTGCAGAATGGGCCGGGCTCGGCGATCCGGTGCTCGAC ATCAATCTGACGCCGAACCGGCAGGACTGCGCCGGCATTTCCGGCATCGCCCGCGATCTCGCCGCCGCCGGCATGGGCAA GTTCAAGAACCCGTCGATCAAGCCGATCAAGGGCGACTTCCCCTGCCCGGTGAAGGTCAGCGTCGAAGACGACAAGCTCT GCCCCGGCTTCGCGCTGCGGCTGGTGCGCGGCGTCAAGAACGGCCCGTCGCCGGACTGGCTGCAGCAGCGGCTCACCGCG ATCGGGCTGCGCCCGATCAACGCGCTGGTCGACATCACCAACTTCCTGACCTTCGACCGCTCGCGCCCGCTGCACGTGTT CGACGCCGCCAAGGTCTCGGGCGATCTCGTCGTGCGCCGCGCCAAGGACGGCGAGACGCTGCTGGCGCTCGACGGCCGCA GCTACACGCTCGACCCCAACGTCTGCGTCATCGCCGACGCCCACGGCGTCGAATCGCTCGCCGGCATCATGGGCGGCGAA GCCTCCGGCTGCTCCGACGACACCACCGACGTGCTGATCGAATCCGCGCTGTGGAACGAGATCAATATCGCGCAGTCCGG CCGCCGGCTCGGCATCAACACCGACGCTCGCTATCGCTTCGAACGCGGCGTCGATCCGGCCTTCATGGTGCCGGGGCTCG ACCTCGCGACGCATCTGGTGATGCAATTCTGCGGCGGCACGCCGTCGGAGGCCGTCGTGGTCGGCAAGGCGTTCGGCGAC GACCGCATCATCGATTTCCCGCTCAGCGAAGTGAAGCGGCTCGCCGGCATCGAAGTGCCGTTCGTGGAAGTGCGCCGGAT TCTCACGCATCTCGGCTTCATGGTGGCGGGCTCGGGCGCGGTGGTGAAGGTCGCGGTGCCGTCGTGGCGCAGCGACGTCC ACGGCAAGGCCGACATCGTCGAGGAAATCGTCCGCATCGTCGGCGTCGACAAGGTGCCGATGACGCCGTTCGAGCGCGGC GACGCACCGCGCAAGCCGGTGCTGACCCAGATCCAGACCCGCACCCGTCGCGCCAAGCGCGCGCTGGCCGCGCGCGGCCT GACCGAGGCGGTGACTTGGTCGTTCATTTCCAAACCAAGCGCCGAAGCCTTCGGCGGCGGCCAGCCCGAATTGGCGCTGG CCAATCCGATCGCCGCGGATCTCTCCGACATGCGGCCGAGCCTGCTGCCTGGGCTGATCGCCGCCGCGCAGGCCAACGCC GATCGCGGCATCCCGGATCTGGCGCTGTTCGAGGTCGGGCAGATCTTCAAGGGCGACCGGCCGCAGGATCAATTCATCGC GGCGAGCGGCGTGCGCCGCGGCGTCGCCTCCGCGCAGGGTCTCGGCCGGCACTGGTCGGGCTCGGCGCAAGCGAGCGCGC TCGACGCCAAGGCCGATGCCTTCGCTGTGCTGGCGGCGGCCGGCGCGCCGATGGCGGGGCTGCAGATCGCGACGAATAAA TTGCCCGCCTGGCTGCATCCCGGCCGCTCCGGCGCGATCCAGATCGGGCCGCAGAATGTGCTGGGCTATTTCGGCGAGCT GCATCCGCGCGTGCTCGAGCAGTTGCACGCCGACGGACCGCTGGTGGCGTTCGAGGTGCTCCTCGACAAGATCCCCGACG CCAAGCAGCGCCCGACCCGCGCCAAGCCGGCGCTGGAATTGTCGGCGTTCCAGCCGGTGTCGCGCGACTTCGCCTTCATC GTCGACCGCAAGGTCGCGGCTGCCGACCTGGTCCGTGCCGCGCAGGGCATCGACAAGAAGCTCATCACCTCGGTCGGCGT GTTCGACGTGTACGAGGGCAAGGGCATCGATACCGACAAGAAGTCGATCGCGATCGCGGTGACGCTGCAGCCGCGCGACA AGACCATGACCGACCAGGAAATCGACGCAGTCGGCGCGAAGATCGTCGCCGAGGTGACGAAGAAGACCGGCGGCGTGCTG CGCGGCTGA
Upstream 100 bases:
>100_bases CTCTCCCGCTTGCGGGAGAGGGTTGGGGTGAGGGCGATGCGGGTCGCAGTCCTTCATTTCAGCACGACACACGCACAGCG CCAGACGGAAGTCACACCCG
Downstream 100 bases:
>100_bases ATTCGTCGCACCGAGACTAATTCTGCTCCGTCTTATGCCTCACGCACGGCCGTCTTCCTGAGGTGCGCGCTCTTGCGCGC CTCGAAGGATGCGCAACGGG
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MKLTLSWLKDHLDTDEQLDALADKLTMIGLEVEGIEDKAKALAPFTIALVLTAEKHPNADKLQVCSVDTGAGAPVQVVCG APNARAGLVTVFAPPGTFIPAKAITLGIGNIRGVESRGMLCSAAELELSEDHDGIIELPADAPIGQGFAEWAGLGDPVLD INLTPNRQDCAGISGIARDLAAAGMGKFKNPSIKPIKGDFPCPVKVSVEDDKLCPGFALRLVRGVKNGPSPDWLQQRLTA IGLRPINALVDITNFLTFDRSRPLHVFDAAKVSGDLVVRRAKDGETLLALDGRSYTLDPNVCVIADAHGVESLAGIMGGE ASGCSDDTTDVLIESALWNEINIAQSGRRLGINTDARYRFERGVDPAFMVPGLDLATHLVMQFCGGTPSEAVVVGKAFGD DRIIDFPLSEVKRLAGIEVPFVEVRRILTHLGFMVAGSGAVVKVAVPSWRSDVHGKADIVEEIVRIVGVDKVPMTPFERG DAPRKPVLTQIQTRTRRAKRALAARGLTEAVTWSFISKPSAEAFGGGQPELALANPIAADLSDMRPSLLPGLIAAAQANA DRGIPDLALFEVGQIFKGDRPQDQFIAASGVRRGVASAQGLGRHWSGSAQASALDAKADAFAVLAAAGAPMAGLQIATNK LPAWLHPGRSGAIQIGPQNVLGYFGELHPRVLEQLHADGPLVAFEVLLDKIPDAKQRPTRAKPALELSAFQPVSRDFAFI VDRKVAAADLVRAAQGIDKKLITSVGVFDVYEGKGIDTDKKSIAIAVTLQPRDKTMTDQEIDAVGAKIVAEVTKKTGGVL RG
Sequences:
>Translated_802_residues MKLTLSWLKDHLDTDEQLDALADKLTMIGLEVEGIEDKAKALAPFTIALVLTAEKHPNADKLQVCSVDTGAGAPVQVVCG APNARAGLVTVFAPPGTFIPAKAITLGIGNIRGVESRGMLCSAAELELSEDHDGIIELPADAPIGQGFAEWAGLGDPVLD INLTPNRQDCAGISGIARDLAAAGMGKFKNPSIKPIKGDFPCPVKVSVEDDKLCPGFALRLVRGVKNGPSPDWLQQRLTA IGLRPINALVDITNFLTFDRSRPLHVFDAAKVSGDLVVRRAKDGETLLALDGRSYTLDPNVCVIADAHGVESLAGIMGGE ASGCSDDTTDVLIESALWNEINIAQSGRRLGINTDARYRFERGVDPAFMVPGLDLATHLVMQFCGGTPSEAVVVGKAFGD DRIIDFPLSEVKRLAGIEVPFVEVRRILTHLGFMVAGSGAVVKVAVPSWRSDVHGKADIVEEIVRIVGVDKVPMTPFERG DAPRKPVLTQIQTRTRRAKRALAARGLTEAVTWSFISKPSAEAFGGGQPELALANPIAADLSDMRPSLLPGLIAAAQANA DRGIPDLALFEVGQIFKGDRPQDQFIAASGVRRGVASAQGLGRHWSGSAQASALDAKADAFAVLAAAGAPMAGLQIATNK LPAWLHPGRSGAIQIGPQNVLGYFGELHPRVLEQLHADGPLVAFEVLLDKIPDAKQRPTRAKPALELSAFQPVSRDFAFI VDRKVAAADLVRAAQGIDKKLITSVGVFDVYEGKGIDTDKKSIAIAVTLQPRDKTMTDQEIDAVGAKIVAEVTKKTGGVL RG >Mature_802_residues MKLTLSWLKDHLDTDEQLDALADKLTMIGLEVEGIEDKAKALAPFTIALVLTAEKHPNADKLQVCSVDTGAGAPVQVVCG APNARAGLVTVFAPPGTFIPAKAITLGIGNIRGVESRGMLCSAAELELSEDHDGIIELPADAPIGQGFAEWAGLGDPVLD INLTPNRQDCAGISGIARDLAAAGMGKFKNPSIKPIKGDFPCPVKVSVEDDKLCPGFALRLVRGVKNGPSPDWLQQRLTA IGLRPINALVDITNFLTFDRSRPLHVFDAAKVSGDLVVRRAKDGETLLALDGRSYTLDPNVCVIADAHGVESLAGIMGGE ASGCSDDTTDVLIESALWNEINIAQSGRRLGINTDARYRFERGVDPAFMVPGLDLATHLVMQFCGGTPSEAVVVGKAFGD DRIIDFPLSEVKRLAGIEVPFVEVRRILTHLGFMVAGSGAVVKVAVPSWRSDVHGKADIVEEIVRIVGVDKVPMTPFERG DAPRKPVLTQIQTRTRRAKRALAARGLTEAVTWSFISKPSAEAFGGGQPELALANPIAADLSDMRPSLLPGLIAAAQANA DRGIPDLALFEVGQIFKGDRPQDQFIAASGVRRGVASAQGLGRHWSGSAQASALDAKADAFAVLAAAGAPMAGLQIATNK LPAWLHPGRSGAIQIGPQNVLGYFGELHPRVLEQLHADGPLVAFEVLLDKIPDAKQRPTRAKPALELSAFQPVSRDFAFI VDRKVAAADLVRAAQGIDKKLITSVGVFDVYEGKGIDTDKKSIAIAVTLQPRDKTMTDQEIDAVGAKIVAEVTKKTGGVL RG
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI124028525, Length=270, Percent_Identity=27.037037037037, Blast_Score=72, Evalue=2e-12, Organism=Escherichia coli, GI1788006, Length=811, Percent_Identity=35.0184956843403, Blast_Score=456, Evalue=1e-129,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 84906; Mature: 84906
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS50886 TRBD ; PS00132 CARBOXYPEPT_ZN_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLTLSWLKDHLDTDEQLDALADKLTMIGLEVEGIEDKAKALAPFTIALVLTAEKHPNAD CEEEHHHHHHHCCCHHHHHHHHHHHHEEEEEEECCCHHHHHHCCEEEEEEEEECCCCCCC KLQVCSVDTGAGAPVQVVCGAPNARAGLVTVFAPPGTFIPAKAITLGIGNIRGVESRGML CEEEEEECCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCE CSAAELELSEDHDGIIELPADAPIGQGFAEWAGLGDPVLDINLTPNRQDCAGISGIARDL EEECCCEECCCCCCEEEECCCCCCCCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHH AAAGMGKFKNPSIKPIKGDFPCPVKVSVEDDKLCPGFALRLVRGVKNGPSPDWLQQRLTA HHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH IGLRPINALVDITNFLTFDRSRPLHVFDAAKVSGDLVVRRAKDGETLLALDGRSYTLDPN HCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCEEEEECCCCCEEEEECCCEEEECCC VCVIADAHGVESLAGIMGGEASGCSDDTTDVLIESALWNEINIAQSGRRLGINTDARYRF EEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHCCCCEECCCCCCCCHH ERGVDPAFMVPGLDLATHLVMQFCGGTPSEAVVVGKAFGDDRIIDFPLSEVKRLAGIEVP HCCCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEECCHHHHHHHHCCCCC FVEVRRILTHLGFMVAGSGAVVKVAVPSWRSDVHGKADIVEEIVRIVGVDKVPMTPFERG HHHHHHHHHHHHHEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC DAPRKPVLTQIQTRTRRAKRALAARGLTEAVTWSFISKPSAEAFGGGQPELALANPIAAD CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHCCCCCCCEEECCCHHHH LSDMRPSLLPGLIAAAQANADRGIPDLALFEVGQIFKGDRPQDQFIAASGVRRGVASAQG HHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC LGRHWSGSAQASALDAKADAFAVLAAAGAPMAGLQIATNKLPAWLHPGRSGAIQIGPQNV CCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCEECCCCCCEEEECHHHH LGYFGELHPRVLEQLHADGPLVAFEVLLDKIPDAKQRPTRAKPALELSAFQPVSRDFAFI HHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEHHCCCCCCCCEEE VDRKVAAADLVRAAQGIDKKLITSVGVFDVYEGKGIDTDKKSIAIAVTLQPRDKTMTDQE CCCHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCHHH IDAVGAKIVAEVTKKTGGVLRG HHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKLTLSWLKDHLDTDEQLDALADKLTMIGLEVEGIEDKAKALAPFTIALVLTAEKHPNAD CEEEHHHHHHHCCCHHHHHHHHHHHHEEEEEEECCCHHHHHHCCEEEEEEEEECCCCCCC KLQVCSVDTGAGAPVQVVCGAPNARAGLVTVFAPPGTFIPAKAITLGIGNIRGVESRGML CEEEEEECCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCE CSAAELELSEDHDGIIELPADAPIGQGFAEWAGLGDPVLDINLTPNRQDCAGISGIARDL EEECCCEECCCCCCEEEECCCCCCCCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHH AAAGMGKFKNPSIKPIKGDFPCPVKVSVEDDKLCPGFALRLVRGVKNGPSPDWLQQRLTA HHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH IGLRPINALVDITNFLTFDRSRPLHVFDAAKVSGDLVVRRAKDGETLLALDGRSYTLDPN HCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCEEEEECCCCCEEEEECCCEEEECCC VCVIADAHGVESLAGIMGGEASGCSDDTTDVLIESALWNEINIAQSGRRLGINTDARYRF EEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHCCCCEECCCCCCCCHH ERGVDPAFMVPGLDLATHLVMQFCGGTPSEAVVVGKAFGDDRIIDFPLSEVKRLAGIEVP HCCCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEECCHHHHHHHHCCCCC FVEVRRILTHLGFMVAGSGAVVKVAVPSWRSDVHGKADIVEEIVRIVGVDKVPMTPFERG HHHHHHHHHHHHHEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC DAPRKPVLTQIQTRTRRAKRALAARGLTEAVTWSFISKPSAEAFGGGQPELALANPIAAD CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHCCCCCCCEEECCCHHHH LSDMRPSLLPGLIAAAQANADRGIPDLALFEVGQIFKGDRPQDQFIAASGVRRGVASAQG HHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC LGRHWSGSAQASALDAKADAFAVLAAAGAPMAGLQIATNKLPAWLHPGRSGAIQIGPQNV CCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCEECCCCCCEEEECHHHH LGYFGELHPRVLEQLHADGPLVAFEVLLDKIPDAKQRPTRAKPALELSAFQPVSRDFAFI HHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEHHCCCCCCCCEEE VDRKVAAADLVRAAQGIDKKLITSVGVFDVYEGKGIDTDKKSIAIAVTLQPRDKTMTDQE CCCHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCHHH IDAVGAKIVAEVTKKTGGVLRG HHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA