| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86610347
Identifier: 86610347
GI number: 86610347
Start: 3026349
End: 3028034
Strand: Direct
Name: 86610347
Synonym: CYB_2927
Alternate gene names: NA
Gene position: 3026349-3028034 (Clockwise)
Preceding gene: 86610336
Following gene: 86610348
Centisome position: 99.33
GC content: 56.11
Gene sequence:
>1686_bases TTGGCCTCCCTATCGTCGGTGGTGTTAAACCCGGCAGCTTGGAGTTGCTTCAGCGTCAGTGAAACCAGCCGCCTGCTACG CCCCCTGCAAATCTGCCCTGACTTGACGGGAACTCTTGTTCTCTCCCCAGGGGCCACTGCCGAAGTGGTCTATAAGTTCC TGCTGAGCGATGGTCGGATCGGAACCATGAAGGGGCTGATCTCCATCGAAGACTTCCGCAGCGAGCGGCTGCGCTCTGTT TACGATCAGCTTCACATCGAAAAGATTATACCGGCCTTCACCGAGTCGGTTGTGGTGCAGATTATCGATCATTTAAAACC GATTTTTGCCCGTGACTTGGATGAGCTGCTTTGGCAAGAAAGTTTTTACTTTACCCCTCAAGATCTGCGCCAGCAGGAGT TCTTGTTGCGCGGCCTACGGCCCGAGGCGATCCCACGCAGCTTTCGGCCTCACCTGCAAAGGGTCTACACCCAGATTATG AAGGTGTGTCGCAGCTTGCCCAACATCGCCTTCCAACTGTGTCTGCGAGCCTACCTGGAGTACAACGAGGTCAAGAACAG GCATCTGCTGGCGCTTCTGCTCAGCAAGTATTTTTACACGCTCTACCGCATCGGTGGGTTGGACGGTTGGGAAAGTGGGG ATCCGGTGGAGCTGGGATCCCTGCGCTCCTCCAATCGGCAGGCTCGACTCCAGGCTCTTGCTCGCCTTCTAACCCTGGAC AACGACAGCGACGCTCCCCTGGTGGGCATTGGGGGCAGCGGGCTGGGGGGCAGCTATTTCAGCGGGGAACGGGAGCCTAC TGGTGTTGAGATGGTGAGCTCGGAGGAGATTGAAAAGCTGCGGCAAGATGTGGAGGTGGCCCGCGGCCAGATCGCCGAGG CCCAGCAATTGGTGGCCCAATATCAGGAGGAGAAAAAACAGGAACTGCTCAACCGCCTTCAGGATCCGGGAAAGTTTCTT CTCTTCAGCATTCATCAGTTTTTTGACACCCTCTTCGGATCCCTGCCCGGAGAGGTGAAAAGCGAGTACGGGGCAGTTTG GGTGCCGCGCACCTCCTACTTGGATGAGAAGGAGCGAGACAAGCTGACAGAGCATTTGCGCCACATCACCAGCGAAGCTT ATTTGGTCAGCGTTCCCTTTGCCGAGGCCACCCTCATCGGCTATTGGCGAGTTTTGGCGGATTCCTTCTACAACCAATGG GTTTTGAATCAGTATAAGCAATTGCAGAGCTATGGGGTGGATTTGGAGCAACAGGGCATCCAGATTCTGGAACGAGAACG ATTTCTGGATGAGGTTCAGTTGCGCTTTGCCGCCCGCCACCGAGAAATCGTCACCCAAAATGTGGAGAAGATCACCCAAA TTGTGGTGGATAGCCTGGCCAAGCGGGTGGCCCTCAACACCGGCCAGCAAAGTTTTCAGGCTATGCGGGCCAAGTTGACC ACCGTTTTGGATATGGACATTTCCCGCAAAGACGTGGGGGAAGTCAAGCGGCTGATCGACTACTTTACGGATGTGTTTTT GGGCAAGCGGGAGGAGCTGCGCTCCCCCTATCCGGTGGGCACGATTTTGCAAGTCAAGGCGGCCATTGAGGCTCGCCCCC CCGATAGCCGCACCCGCATTGGTCTGGAAATTTTGGGTCAGCTCTACCGCGAGTACGTTCCCCTGCTGGGATCCGCACCG AAATAG
Upstream 100 bases:
>100_bases CCCTTCCGCCGTTCAGGATTCGCGGGCGAGCTTGCCTCCGGGACCTAGCGAAGCTCACAGGGGAGAAATCCGGCTGGAGG ACTTGGATGAGAAGCAATTG
Downstream 100 bases:
>100_bases GAACGGGGGCATAGCGGGGGATCCCGTAGGCCGACAGGTTTTGGGCACAATGGGGACTGGCGCGCTGTCTAGGGTTGGAG ACGGAGATTCCCCATGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 561; Mature: 560
Protein sequence:
>561_residues MASLSSVVLNPAAWSCFSVSETSRLLRPLQICPDLTGTLVLSPGATAEVVYKFLLSDGRIGTMKGLISIEDFRSERLRSV YDQLHIEKIIPAFTESVVVQIIDHLKPIFARDLDELLWQESFYFTPQDLRQQEFLLRGLRPEAIPRSFRPHLQRVYTQIM KVCRSLPNIAFQLCLRAYLEYNEVKNRHLLALLLSKYFYTLYRIGGLDGWESGDPVELGSLRSSNRQARLQALARLLTLD NDSDAPLVGIGGSGLGGSYFSGEREPTGVEMVSSEEIEKLRQDVEVARGQIAEAQQLVAQYQEEKKQELLNRLQDPGKFL LFSIHQFFDTLFGSLPGEVKSEYGAVWVPRTSYLDEKERDKLTEHLRHITSEAYLVSVPFAEATLIGYWRVLADSFYNQW VLNQYKQLQSYGVDLEQQGIQILERERFLDEVQLRFAARHREIVTQNVEKITQIVVDSLAKRVALNTGQQSFQAMRAKLT TVLDMDISRKDVGEVKRLIDYFTDVFLGKREELRSPYPVGTILQVKAAIEARPPDSRTRIGLEILGQLYREYVPLLGSAP K
Sequences:
>Translated_561_residues MASLSSVVLNPAAWSCFSVSETSRLLRPLQICPDLTGTLVLSPGATAEVVYKFLLSDGRIGTMKGLISIEDFRSERLRSV YDQLHIEKIIPAFTESVVVQIIDHLKPIFARDLDELLWQESFYFTPQDLRQQEFLLRGLRPEAIPRSFRPHLQRVYTQIM KVCRSLPNIAFQLCLRAYLEYNEVKNRHLLALLLSKYFYTLYRIGGLDGWESGDPVELGSLRSSNRQARLQALARLLTLD NDSDAPLVGIGGSGLGGSYFSGEREPTGVEMVSSEEIEKLRQDVEVARGQIAEAQQLVAQYQEEKKQELLNRLQDPGKFL LFSIHQFFDTLFGSLPGEVKSEYGAVWVPRTSYLDEKERDKLTEHLRHITSEAYLVSVPFAEATLIGYWRVLADSFYNQW VLNQYKQLQSYGVDLEQQGIQILERERFLDEVQLRFAARHREIVTQNVEKITQIVVDSLAKRVALNTGQQSFQAMRAKLT TVLDMDISRKDVGEVKRLIDYFTDVFLGKREELRSPYPVGTILQVKAAIEARPPDSRTRIGLEILGQLYREYVPLLGSAP K >Mature_560_residues ASLSSVVLNPAAWSCFSVSETSRLLRPLQICPDLTGTLVLSPGATAEVVYKFLLSDGRIGTMKGLISIEDFRSERLRSVY DQLHIEKIIPAFTESVVVQIIDHLKPIFARDLDELLWQESFYFTPQDLRQQEFLLRGLRPEAIPRSFRPHLQRVYTQIMK VCRSLPNIAFQLCLRAYLEYNEVKNRHLLALLLSKYFYTLYRIGGLDGWESGDPVELGSLRSSNRQARLQALARLLTLDN DSDAPLVGIGGSGLGGSYFSGEREPTGVEMVSSEEIEKLRQDVEVARGQIAEAQQLVAQYQEEKKQELLNRLQDPGKFLL FSIHQFFDTLFGSLPGEVKSEYGAVWVPRTSYLDEKERDKLTEHLRHITSEAYLVSVPFAEATLIGYWRVLADSFYNQWV LNQYKQLQSYGVDLEQQGIQILERERFLDEVQLRFAARHREIVTQNVEKITQIVVDSLAKRVALNTGQQSFQAMRAKLTT VLDMDISRKDVGEVKRLIDYFTDVFLGKREELRSPYPVGTILQVKAAIEARPPDSRTRIGLEILGQLYREYVPLLGSAPK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64003; Mature: 63872
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASLSSVVLNPAAWSCFSVSETSRLLRPLQICPDLTGTLVLSPGATAEVVYKFLLSDGRI CCCCHHHHCCCCCCCHHCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCE GTMKGLISIEDFRSERLRSVYDQLHIEKIIPAFTESVVVQIIDHLKPIFARDLDELLWQE EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SFYFTPQDLRQQEFLLRGLRPEAIPRSFRPHLQRVYTQIMKVCRSLPNIAFQLCLRAYLE CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YNEVKNRHLLALLLSKYFYTLYRIGGLDGWESGDPVELGSLRSSNRQARLQALARLLTLD HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC NDSDAPLVGIGGSGLGGSYFSGEREPTGVEMVSSEEIEKLRQDVEVARGQIAEAQQLVAQ CCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH YQEEKKQELLNRLQDPGKFLLFSIHQFFDTLFGSLPGEVKSEYGAVWVPRTSYLDEKERD HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEECCCHHHCCHHHHH KLTEHLRHITSEAYLVSVPFAEATLIGYWRVLADSFYNQWVLNQYKQLQSYGVDLEQQGI HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH QILERERFLDEVQLRFAARHREIVTQNVEKITQIVVDSLAKRVALNTGQQSFQAMRAKLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH TVLDMDISRKDVGEVKRLIDYFTDVFLGKREELRSPYPVGTILQVKAAIEARPPDSRTRI HHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHH GLEILGQLYREYVPLLGSAPK HHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ASLSSVVLNPAAWSCFSVSETSRLLRPLQICPDLTGTLVLSPGATAEVVYKFLLSDGRI CCCHHHHCCCCCCCHHCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCE GTMKGLISIEDFRSERLRSVYDQLHIEKIIPAFTESVVVQIIDHLKPIFARDLDELLWQE EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SFYFTPQDLRQQEFLLRGLRPEAIPRSFRPHLQRVYTQIMKVCRSLPNIAFQLCLRAYLE CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YNEVKNRHLLALLLSKYFYTLYRIGGLDGWESGDPVELGSLRSSNRQARLQALARLLTLD HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC NDSDAPLVGIGGSGLGGSYFSGEREPTGVEMVSSEEIEKLRQDVEVARGQIAEAQQLVAQ CCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH YQEEKKQELLNRLQDPGKFLLFSIHQFFDTLFGSLPGEVKSEYGAVWVPRTSYLDEKERD HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEECCCHHHCCHHHHH KLTEHLRHITSEAYLVSVPFAEATLIGYWRVLADSFYNQWVLNQYKQLQSYGVDLEQQGI HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH QILERERFLDEVQLRFAARHREIVTQNVEKITQIVVDSLAKRVALNTGQQSFQAMRAKLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH TVLDMDISRKDVGEVKRLIDYFTDVFLGKREELRSPYPVGTILQVKAAIEARPPDSRTRI HHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHH GLEILGQLYREYVPLLGSAPK HHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA