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The map label for this gene is ydcM [C]

Identifier: 86610330

GI number: 86610330

Start: 3008653

End: 3009870

Strand: Direct

Name: ydcM [C]

Synonym: CYB_2910

Alternate gene names: 86610330

Gene position: 3008653-3009870 (Clockwise)

Preceding gene: 86610329

Following gene: 86610331

Centisome position: 98.75

GC content: 54.6

Gene sequence:

>1218_bases
ATGAGCCAAGTCCTGACCGTCTCCTGTAAGCTCAAGGCGTCCCCGTCGCAAGCCGCCAAATTGGACGCGACGATGGATGC
CTTTGTACAGGCATTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGGTTTGGCTTGTCCAGTAACTTGGCAAGGACTACGTCCCGCTTACGCGACCAACAGGTGTGC
AGACGGGTAGCGGGTTCCCGCAAAGTGGCTAAGCAGAAAAAGCGTCCCGTCAAGGAGTTTAAGAGCGGCTTTGTTACCTA
CGACGCTCGCATCTTTTCGTTCCGTCAAAAAGACTGGACGGTGTCGCTCACCACGGTTGAAGGGAGAGAACGCTTTGAGC
TAGCCATTGGCAACTACCAGCGTGGGATGCTGGCTGGTTCCAACCCCAAATCGGCCACCCTAGTCCAGCGGAAGGACGGC
TCCTACTACATCCAGATTTGCGTAGAGAAAAAACCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGATTTGGG
AAGGATAGATATCGCTCATACCTCAGAGGGGAAGAACTGGAATGGACAGCAGTTGAACAGAGTCCGAGACCACTACTCCC
GGTTGAGGGCGGTACTCCAACGCAAAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGG
CTGTCTGGCAAGGAGAGACGCTTTCAAGTGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAAGCTAC
CAACAGCGCTATCGCTCTGGAAGACCTGACAGGGATCCGGGAAAGGGTCAATCAACAGCCACGCAGCAAAACCGAAAGGC
GCAGAACCAACAGTTGGGCGTTCTACCAACTACGTCAATTTCTGGAGTACAAGGCGAGGGTTGCAGGGGTTTCTCTGATT
CTTGTGCCGCCCGCCTACACGTCGCAGACCTGCCACCGGTGTTTGCACATTCATCCCGACCCTGCGCAATCCTACCGCAG
TGGTAAGTCGTTCAAGTGTGGGCACTGTGGATGGGAAGGGGATGCGGACTTGAATGGTGCAAACGTAATTGCGCTCTTGG
GGGCTGCCGTAAACCAGCCTGGAGGTCCGGGCTTGTTTTGTTCTCTGGTAGAGCAGAGCAGGCTCAGGGCTACTGAAAGC
CCGCTCCGTACCGCTTAG

Upstream 100 bases:

>100_bases
AAGGCCGGCCAGCCAGTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGCCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGCCGGGTAGTTTACCTCTACACCCCTCGGAAAGAAGCGCTATCATAGAAGTCCGTCGAATAAACTCCCTTCG
TAAAACCTCGCGAGGCAGAT

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSQVLTVSCKLKASPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVC
RRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDG
SYYIQICVEKKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQR
LSGKERRFQVWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRTNSWAFYQLRQFLEYKARVAGVSLI
LVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPGGPGLFCSLVEQSRLRATES
PLRTA

Sequences:

>Translated_405_residues
MSQVLTVSCKLKASPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVC
RRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDG
SYYIQICVEKKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQR
LSGKERRFQVWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRTNSWAFYQLRQFLEYKARVAGVSLI
LVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPGGPGLFCSLVEQSRLRATES
PLRTA
>Mature_404_residues
SQVLTVSCKLKASPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVCR
RVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGS
YYIQICVEKKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQRL
SGKERRFQVWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRTNSWAFYQLRQFLEYKARVAGVSLIL
VPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPGGPGLFCSLVEQSRLRATESP
LRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=234, Percent_Identity=28.2051282051282, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45740; Mature: 45609

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTVSCKLKASPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRAR
CCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWT
CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHCCCEEEEHHEEEEECCCEE
VSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEKKPPKQQDTDK
EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCC
VIGVDLGRIDIAHTSEGKNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQR
EEEEEECEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQVWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRTNSWA
HCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARVAGVSLILVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCC
DADLNGANVIALLGAAVNQPGGPGLFCSLVEQSRLRATESPLRTA
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SQVLTVSCKLKASPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRAR
CCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWT
CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHCCCEEEEHHEEEEECCCEE
VSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEKKPPKQQDTDK
EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCC
VIGVDLGRIDIAHTSEGKNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQR
EEEEEECEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQVWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRTNSWA
HCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARVAGVSLILVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCC
DADLNGANVIALLGAAVNQPGGPGLFCSLVEQSRLRATESPLRTA
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]