| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86610258
Identifier: 86610258
GI number: 86610258
Start: 2932604
End: 2933170
Strand: Direct
Name: 86610258
Synonym: CYB_2834
Alternate gene names: NA
Gene position: 2932604-2933170 (Clockwise)
Preceding gene: 86610257
Following gene: 86610259
Centisome position: 96.26
GC content: 56.97
Gene sequence:
>567_bases ATGGCTAGCCCGTCGAATCTTTCTCAGAAGGGATCCCTGCCCAAATGGCGGTTTTGGCTACCCCTACTGCTGCAGCTGGG TATCGTTCTGCTGATACCGGCTCGGCAAGCGCTGACTCTTGCTGTCGGAACCACGATCTACCTGCAAACGGCCCCTGTGG ATCCCTATGACCTTTTGCGGGGCCGGTACGTGACCTTGGGCTACGTCGTCGCTCGACGCTCCACCCTAGAGCAACTGCCG GGTTGGTTACCTGATTTGGAGACGCCAGGGATCCTTTATCTGCGCTTAGCTCCCCCCGAAGGGGATCCCACTCAACCTTG GCGAGCAATCGGTGTCAGCCGGGAGATGCCCAAAGATTTGCAGCCTGAAGAGAAAGTGCTGCGAGGCTGGTTTGACGGGC AGCAGCTCAAGTTGGGAATCGAAGAATTTTTTATTCCCGAAGCGATTGGAGATGCCTTGGAAGAGGATATTCGGCGTTAC CCTAAAGCCACGCGGGCAGAAGTGAAAGTGGATCCCTGGGGCAAGGCAGCATTGGTCGGCCTCTGGGTAGGGGAGCATCG GTACTAA
Upstream 100 bases:
>100_bases CCATCGGGTCAGGGCAGGGGCCAGTGGGGCACTTCTACCCGCTTCTGTCCGGGATTGGCAAACCTGTGCCATAAGAGAGA GGTCACTCTCTCTGGCTGCT
Downstream 100 bases:
>100_bases GTGCTCATTCTGCCCGGCTTTAACGCTTTAACAATTAATCACTATATTCTGACATCCGAACCCGAAGGAGAGCCGGAAAA CTGAATGGGGCAGGGATCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MASPSNLSQKGSLPKWRFWLPLLLQLGIVLLIPARQALTLAVGTTIYLQTAPVDPYDLLRGRYVTLGYVVARRSTLEQLP GWLPDLETPGILYLRLAPPEGDPTQPWRAIGVSREMPKDLQPEEKVLRGWFDGQQLKLGIEEFFIPEAIGDALEEDIRRY PKATRAEVKVDPWGKAALVGLWVGEHRY
Sequences:
>Translated_188_residues MASPSNLSQKGSLPKWRFWLPLLLQLGIVLLIPARQALTLAVGTTIYLQTAPVDPYDLLRGRYVTLGYVVARRSTLEQLP GWLPDLETPGILYLRLAPPEGDPTQPWRAIGVSREMPKDLQPEEKVLRGWFDGQQLKLGIEEFFIPEAIGDALEEDIRRY PKATRAEVKVDPWGKAALVGLWVGEHRY >Mature_187_residues ASPSNLSQKGSLPKWRFWLPLLLQLGIVLLIPARQALTLAVGTTIYLQTAPVDPYDLLRGRYVTLGYVVARRSTLEQLPG WLPDLETPGILYLRLAPPEGDPTQPWRAIGVSREMPKDLQPEEKVLRGWFDGQQLKLGIEEFFIPEAIGDALEEDIRRYP KATRAEVKVDPWGKAALVGLWVGEHRY
Specific function: Unknown
COG id: COG4929
COG function: function code S; Uncharacterized membrane-anchored protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21224; Mature: 21093
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASPSNLSQKGSLPKWRFWLPLLLQLGIVLLIPARQALTLAVGTTIYLQTAPVDPYDLLR CCCCCCCCCCCCCCCHHHHHHHHHHCCHHEEECCCHHEEEEECCEEEEEECCCCHHHHHC GRYVTLGYVVARRSTLEQLPGWLPDLETPGILYLRLAPPEGDPTQPWRAIGVSREMPKDL CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCC QPEEKVLRGWFDGQQLKLGIEEFFIPEAIGDALEEDIRRYPKATRAEVKVDPWGKAALVG CHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEE LWVGEHRY EECCCCCC >Mature Secondary Structure ASPSNLSQKGSLPKWRFWLPLLLQLGIVLLIPARQALTLAVGTTIYLQTAPVDPYDLLR CCCCCCCCCCCCCCHHHHHHHHHHCCHHEEECCCHHEEEEECCEEEEEECCCCHHHHHC GRYVTLGYVVARRSTLEQLPGWLPDLETPGILYLRLAPPEGDPTQPWRAIGVSREMPKDL CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCC QPEEKVLRGWFDGQQLKLGIEEFFIPEAIGDALEEDIRRYPKATRAEVKVDPWGKAALVG CHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEE LWVGEHRY EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA