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The map label for this gene is yjfH [C]

Identifier: 86610253

GI number: 86610253

Start: 2929069

End: 2930205

Strand: Direct

Name: yjfH [C]

Synonym: CYB_2829

Alternate gene names: 86610253

Gene position: 2929069-2930205 (Clockwise)

Preceding gene: 86610252

Following gene: 86610254

Centisome position: 96.14

GC content: 58.66

Gene sequence:

>1137_bases
ATGCCCAAGACTTCTCAGCGCAAACCTGCTTCACGGCTGTCTCGCTCGGGCAAACTGCAGCCGCGAAGGGCAGGGCAATC
CGTTAGCAAGCGGGTACAGCGGCCCAAACGCCGAGACGGGGATCCCAAGCTTGCCCTCCGAGAGGCTCCAGTGAAGCCCA
TCCGTCGCGACGCGCAACGGCAGTGGCCCCAAGGCAAGATGGCTCCTCAACCAGTAGGCGAGCTGGATCCCGGCCTCTCC
ACTGGCGAGACAGGGATCTTGCCAGGGGAAGTTCAGCCTCAGGCCGACGGGAATCCGGAGACCGAGCTGGAGCAAGAGAT
TATCTACGGTCGCCAGACAGTACTGGCTGCTTTGAAAAGTCAAGCCACCCTCAATCGGGTTTGGATCTTGCCGAAGTTGC
GCTACAGCCCCCAATTTTTATCTCTGTTGGAAGAAGCCAAAGCGCGGGGCACCGTTATCGACGAAGTGTCTCCAAAGCGG
CTGAACGCCCTCACGGCTGGCGCCAACCACCAGGGTATCGCTGCCCAAGCCACGCCTTATCAGTACGTGGCCCTGGAGGA
TTTGGTGGAAAGAAGCCGGCAGGCCGGCCCCAATCCGGTGCTGGTGGTTCTAGACGGGATCCAGGATCCCCATAACTTGG
GAGCTATTGCCCGTAGTGTAGAAGCTTTTGGCATGCAGGGGATGGTGATCCCCCAGCGGCGGGCAGCAGGGGTAACCTCG
ACGGTGATGAAGGTAGCGGCGGGAGCCCTCTCCACCTTGCCGGTGGCGCGGGTGGTGAATTTGAATCGGGCTTTGGAATA
CCTCAAAGAGCAGGGGTTTTGGGTCTATGGCACCACCAGCCGAGGGGCTGACCCCATCTATAGCGCCGATTTTCAGCGGC
CCATTGCTTTGGTAGTAGGATCCGAGGGGGAAGGGATTAGCCTGCTCACACAACGCCATTGTGACCAACTGCTGTCCATT
CCCTTGGCAGGCCGCACTGAAAGCTTGAATGCTTCTGTGGCCGCCGGCATTGCCCTCTACGAAATCCACCGGCAGCGCTC
TCCCCACCACCTCAAACGCCCTGAGGTTGATACATTCCTCAACAAATCGTCAATAAAAGTAGTAGAATCTAGGGGATTGC
AAAAGGACATCCAATGA

Upstream 100 bases:

>100_bases
ACGGCTGCGCCATATCCTCGCCCTCACTGATGTTTTGGCTGAGACCCTAGGCGAGTGGGAAGGTTAGGATAGTCTTTCCG
TCTTTCCATCTTCCACGCCC

Downstream 100 bases:

>100_bases
TTGCTAGACTTGATAATGGGGGATGGATCCCGTGAGCAACCCTTTGGTCAGTCTGTTGGATAAGCTGCGCGGCCTGTCGG
TCTGGATCGAGATCACCACC

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MPKTSQRKPASRLSRSGKLQPRRAGQSVSKRVQRPKRRDGDPKLALREAPVKPIRRDAQRQWPQGKMAPQPVGELDPGLS
TGETGILPGEVQPQADGNPETELEQEIIYGRQTVLAALKSQATLNRVWILPKLRYSPQFLSLLEEAKARGTVIDEVSPKR
LNALTAGANHQGIAAQATPYQYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTS
TVMKVAAGALSTLPVARVVNLNRALEYLKEQGFWVYGTTSRGADPIYSADFQRPIALVVGSEGEGISLLTQRHCDQLLSI
PLAGRTESLNASVAAGIALYEIHRQRSPHHLKRPEVDTFLNKSSIKVVESRGLQKDIQ

Sequences:

>Translated_378_residues
MPKTSQRKPASRLSRSGKLQPRRAGQSVSKRVQRPKRRDGDPKLALREAPVKPIRRDAQRQWPQGKMAPQPVGELDPGLS
TGETGILPGEVQPQADGNPETELEQEIIYGRQTVLAALKSQATLNRVWILPKLRYSPQFLSLLEEAKARGTVIDEVSPKR
LNALTAGANHQGIAAQATPYQYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTS
TVMKVAAGALSTLPVARVVNLNRALEYLKEQGFWVYGTTSRGADPIYSADFQRPIALVVGSEGEGISLLTQRHCDQLLSI
PLAGRTESLNASVAAGIALYEIHRQRSPHHLKRPEVDTFLNKSSIKVVESRGLQKDIQ
>Mature_377_residues
PKTSQRKPASRLSRSGKLQPRRAGQSVSKRVQRPKRRDGDPKLALREAPVKPIRRDAQRQWPQGKMAPQPVGELDPGLST
GETGILPGEVQPQADGNPETELEQEIIYGRQTVLAALKSQATLNRVWILPKLRYSPQFLSLLEEAKARGTVIDEVSPKRL
NALTAGANHQGIAAQATPYQYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTST
VMKVAAGALSTLPVARVVNLNRALEYLKEQGFWVYGTTSRGADPIYSADFQRPIALVVGSEGEGISLLTQRHCDQLLSIP
LAGRTESLNASVAAGIALYEIHRQRSPHHLKRPEVDTFLNKSSIKVVESRGLQKDIQ

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=220, Percent_Identity=33.6363636363636, Blast_Score=103, Evalue=2e-22,
Organism=Escherichia coli, GI1790623, Length=246, Percent_Identity=41.4634146341463, Blast_Score=182, Evalue=4e-47,
Organism=Escherichia coli, GI1788935, Length=348, Percent_Identity=24.4252873563218, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790083, Length=172, Percent_Identity=32.5581395348837, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17555908, Length=268, Percent_Identity=29.8507462686567, Blast_Score=95, Evalue=6e-20,
Organism=Saccharomyces cerevisiae, GI6324775, Length=291, Percent_Identity=26.8041237113402, Blast_Score=87, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 41282; Mature: 41151

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKTSQRKPASRLSRSGKLQPRRAGQSVSKRVQRPKRRDGDPKLALREAPVKPIRRDAQR
CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHH
QWPQGKMAPQPVGELDPGLSTGETGILPGEVQPQADGNPETELEQEIIYGRQTVLAALKS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QATLNRVWILPKLRYSPQFLSLLEEAKARGTVIDEVSPKRLNALTAGANHQGIAAQATPY
HHHHCEEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHCCCCCCCCCEECCCCC
QYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTS
HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHCCHHH
TVMKVAAGALSTLPVARVVNLNRALEYLKEQGFWVYGTTSRGADPIYSADFQRPIALVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEEEEC
SEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALYEIHRQRSPHHLKRPEVDTFL
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
NKSSIKVVESRGLQKDIQ
CCCHHHHHHHCCCHHCCC
>Mature Secondary Structure 
PKTSQRKPASRLSRSGKLQPRRAGQSVSKRVQRPKRRDGDPKLALREAPVKPIRRDAQR
CCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHH
QWPQGKMAPQPVGELDPGLSTGETGILPGEVQPQADGNPETELEQEIIYGRQTVLAALKS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QATLNRVWILPKLRYSPQFLSLLEEAKARGTVIDEVSPKRLNALTAGANHQGIAAQATPY
HHHHCEEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHCCCCCCCCCEECCCCC
QYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTS
HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHCCHHH
TVMKVAAGALSTLPVARVVNLNRALEYLKEQGFWVYGTTSRGADPIYSADFQRPIALVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEEEEC
SEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALYEIHRQRSPHHLKRPEVDTFL
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
NKSSIKVVESRGLQKDIQ
CCCHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]