| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is gidA [H]
Identifier: 86610246
GI number: 86610246
Start: 2923704
End: 2925635
Strand: Direct
Name: gidA [H]
Synonym: CYB_2823
Alternate gene names: 86610246
Gene position: 2923704-2925635 (Clockwise)
Preceding gene: 86610245
Following gene: 86610248
Centisome position: 95.96
GC content: 62.63
Gene sequence:
>1932_bases ATGCTCAGAGTTGGACGGGACAGCATTGATTTTCTCGATCACTACGATGTGGTGGTGGTCGGCGGGGGGCACTCCGGCTG TGAGGCAGCATTGGCGGCAGCGCGGCTGGGCTGTAACACCCTCATGCTGACATTGAATCTGGACAAGATCGCCTGGCAAC CCTGTAACCCTGCCGTCGGCGGCCCGGCCAAATCGCAACTGGTACACGAAATCGATGCCCTCGGCGGCGAGATGGGCAAA GTTACCGACCGCACCTATTTGCAAAAGCGGGTGCTCAACCGCTCGCGGGGGCCGGCGGTGTGGGCGCTGCGGGCACAAAC CGACAAACGGGAATATGCGCGGGTGATGCGCTCGGTGGTGGAAAACCAGCCTAACCTGACGATTCGCGAGGGCACTGTCA CCGATTTGGTGTTGGGGCGCAACGACGAGGTGGTGGGCGTGGTCACCCATTTCGGCACCATCTTCGGCTGTCGGGCGGTG ATCCTGACCACCGGTACGTTTTTGGGGGGGCGCATCTGGATTGGTCGCCACTGGCAAGCTGCCGGACGAGCAGGGGAATT TGCCGTGGAAGGGCTGACCGACACCCTGCGCCAACTGGGCTTTGAAACGGGCCGGCTGAAAACCGGCACCCCTGCCCGCG TGGATCGGCGCAGCGTGGATTTTTCGGTCATGGAGCGGCAACCGGGGGATCCCGATGTGCGCTGGTTTAGCTTCGACCCC GAGGTGTGGGTGCCAAGGGAGCAGATGGATTGCTACTTGACCCGCACCACCCCAGAGACCCACCGCATCATCCGGGAAAA TCTCCACGAAACCCCTGTCTATGGCGGCTGGGTGGAGGCCAAAGGGCCCCGCTACTGCCCCAGCATCGAAGACAAGATTG TCCGCTTTGCCGACAAGGAAAGCCATCAGATTTTTATTGAGCCGGAAGGGCGGGATCTGCCGGAGCTCTACATCCAGGGG TTCTCCACGGGGATGCCGGAGAAAATCCAGATCCAGATGTTGCGCTCCTTGCCTGGCCTGGAGCGGTGCGTCATGCTGCG GCCTGCCTATGCGGTGGAATACGACTATCTGCCGGCCACCCAGCTCTACCCCACTCTGATGACCAAAAAGGTGCAGGGGT TGTTTTGCGCCGGCCAGATCAACGGCACCACCGGCTACGAAGAGGCGGCAGCTCAGGGGCTCATAGCCGGGATCAACGCC GCCCGCCTGGTTCAAGGCAAGCCCCTGGTCACCCTGCCGCGGGAGTCCAGCTACATCGGCACCCTCATCGACGATCTCTG CACCAAAGAACTGCGGGAGCCCTACCGCATGCTCACCAGCCGCTCCGAATACCGCCTCATCCTGCGCTCCGACAATGCCG ACCAACGGCTCACCCCCCTGGGGCGAGAATGGGGCTTGATCGATGACCGGCGCTGGGCCCTGTTCCAAGCCAAGCAAGCG CGCATTGCCGCAGAAATCGAGCGCCTGGAAACGCAGCGGGTGAAGGCCCACGACCTGGCCGGCATCCAACTAAGCCAACT GACGGGGCAGGGGATCAAGGGATCCGCCACCCTGGCCGAGATCTTGCGCCGCAACCAGATTCACTACTCCGATCTCCTGG AACTGGGGCTGGGGGATGCGGAGCTGGATCCCTTTGAGCAGGAGGCGGCAGAGATTGCCGTCAAATACAGCGGCTACATC CAGCGGCAGCAGAGCCAAATTGAGCAGGTGAGCAAGCAGTACCACCGCCCTCTGCCCCCCGATCTGGACTACCACTCCAT CCCCACCCTCTCCAAAGAGTCGCGGGATAAGCTCTCGGCGGTGCGCCCGCTAACCGTGGGCCAGGCGGCCCGCATCGGCG GTGTCAACCCCGCCGACATCAACGCGCTGCTCATCTACCTTGAGGTGAGGCAACGTCAGAGGGCGGCGGATCCCGTCTGT TCTTCTCTGTGA
Upstream 100 bases:
>100_bases CTATCCGTTGCCGCCATCGCTAAGCTGGATAAGCGAGCTGAAATAACCTGAAAATTAAAAGACCGGGGATCCCGGCTATT CATTTTGGAATTGCCACCCT
Downstream 100 bases:
>100_bases GCTCCGCCCCCATCCATGTAGAGGGAAGGGATCCCTTCTAGGGGCATGCGCGAGGCTACCCCCAGCTCCAGCGGCGAGAC CTCCCCCCGCAGCCAGTGGC
Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A [H]
Number of amino acids: Translated: 643; Mature: 643
Protein sequence:
>643_residues MLRVGRDSIDFLDHYDVVVVGGGHSGCEAALAAARLGCNTLMLTLNLDKIAWQPCNPAVGGPAKSQLVHEIDALGGEMGK VTDRTYLQKRVLNRSRGPAVWALRAQTDKREYARVMRSVVENQPNLTIREGTVTDLVLGRNDEVVGVVTHFGTIFGCRAV ILTTGTFLGGRIWIGRHWQAAGRAGEFAVEGLTDTLRQLGFETGRLKTGTPARVDRRSVDFSVMERQPGDPDVRWFSFDP EVWVPREQMDCYLTRTTPETHRIIRENLHETPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDLPELYIQG FSTGMPEKIQIQMLRSLPGLERCVMLRPAYAVEYDYLPATQLYPTLMTKKVQGLFCAGQINGTTGYEEAAAQGLIAGINA ARLVQGKPLVTLPRESSYIGTLIDDLCTKELREPYRMLTSRSEYRLILRSDNADQRLTPLGREWGLIDDRRWALFQAKQA RIAAEIERLETQRVKAHDLAGIQLSQLTGQGIKGSATLAEILRRNQIHYSDLLELGLGDAELDPFEQEAAEIAVKYSGYI QRQQSQIEQVSKQYHRPLPPDLDYHSIPTLSKESRDKLSAVRPLTVGQAARIGGVNPADINALLIYLEVRQRQRAADPVC SSL
Sequences:
>Translated_643_residues MLRVGRDSIDFLDHYDVVVVGGGHSGCEAALAAARLGCNTLMLTLNLDKIAWQPCNPAVGGPAKSQLVHEIDALGGEMGK VTDRTYLQKRVLNRSRGPAVWALRAQTDKREYARVMRSVVENQPNLTIREGTVTDLVLGRNDEVVGVVTHFGTIFGCRAV ILTTGTFLGGRIWIGRHWQAAGRAGEFAVEGLTDTLRQLGFETGRLKTGTPARVDRRSVDFSVMERQPGDPDVRWFSFDP EVWVPREQMDCYLTRTTPETHRIIRENLHETPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDLPELYIQG FSTGMPEKIQIQMLRSLPGLERCVMLRPAYAVEYDYLPATQLYPTLMTKKVQGLFCAGQINGTTGYEEAAAQGLIAGINA ARLVQGKPLVTLPRESSYIGTLIDDLCTKELREPYRMLTSRSEYRLILRSDNADQRLTPLGREWGLIDDRRWALFQAKQA RIAAEIERLETQRVKAHDLAGIQLSQLTGQGIKGSATLAEILRRNQIHYSDLLELGLGDAELDPFEQEAAEIAVKYSGYI QRQQSQIEQVSKQYHRPLPPDLDYHSIPTLSKESRDKLSAVRPLTVGQAARIGGVNPADINALLIYLEVRQRQRAADPVC SSL >Mature_643_residues MLRVGRDSIDFLDHYDVVVVGGGHSGCEAALAAARLGCNTLMLTLNLDKIAWQPCNPAVGGPAKSQLVHEIDALGGEMGK VTDRTYLQKRVLNRSRGPAVWALRAQTDKREYARVMRSVVENQPNLTIREGTVTDLVLGRNDEVVGVVTHFGTIFGCRAV ILTTGTFLGGRIWIGRHWQAAGRAGEFAVEGLTDTLRQLGFETGRLKTGTPARVDRRSVDFSVMERQPGDPDVRWFSFDP EVWVPREQMDCYLTRTTPETHRIIRENLHETPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDLPELYIQG FSTGMPEKIQIQMLRSLPGLERCVMLRPAYAVEYDYLPATQLYPTLMTKKVQGLFCAGQINGTTGYEEAAAQGLIAGINA ARLVQGKPLVTLPRESSYIGTLIDDLCTKELREPYRMLTSRSEYRLILRSDNADQRLTPLGREWGLIDDRRWALFQAKQA RIAAEIERLETQRVKAHDLAGIQLSQLTGQGIKGSATLAEILRRNQIHYSDLLELGLGDAELDPFEQEAAEIAVKYSGYI QRQQSQIEQVSKQYHRPLPPDLDYHSIPTLSKESRDKLSAVRPLTVGQAARIGGVNPADINALLIYLEVRQRQRAADPVC SSL
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family [H]
Homologues:
Organism=Homo sapiens, GI74024895, Length=646, Percent_Identity=41.9504643962848, Blast_Score=444, Evalue=1e-124, Organism=Homo sapiens, GI19882217, Length=671, Percent_Identity=40.3874813710879, Blast_Score=429, Evalue=1e-120, Organism=Homo sapiens, GI183227703, Length=686, Percent_Identity=39.5043731778426, Blast_Score=424, Evalue=1e-118, Organism=Escherichia coli, GI2367273, Length=619, Percent_Identity=48.9499192245557, Blast_Score=576, Evalue=1e-165, Organism=Caenorhabditis elegans, GI17534255, Length=625, Percent_Identity=40.48, Blast_Score=442, Evalue=1e-124, Organism=Saccharomyces cerevisiae, GI6321202, Length=642, Percent_Identity=43.7694704049844, Blast_Score=486, Evalue=1e-138, Organism=Drosophila melanogaster, GI24658174, Length=637, Percent_Identity=43.6420722135008, Blast_Score=453, Evalue=1e-127,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 [H]
Pfam domain/function: PF01134 GIDA [H]
EC number: NA
Molecular weight: Translated: 71886; Mature: 71886
Theoretical pI: Translated: 7.30; Mature: 7.30
Prosite motif: PS01280 GIDA_1 ; PS01281 GIDA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRVGRDSIDFLDHYDVVVVGGGHSGCEAALAAARLGCNTLMLTLNLDKIAWQPCNPAVG CCCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCC GPAKSQLVHEIDALGGEMGKVTDRTYLQKRVLNRSRGPAVWALRAQTDKREYARVMRSVV CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH ENQPNLTIREGTVTDLVLGRNDEVVGVVTHFGTIFGCRAVILTTGTFLGGRIWIGRHWQA CCCCCEEEECCCEEEEEECCCCCEEEHHHHHHHHHHHHHHEEECCCCCCCEEEEECCCCC AGRAGEFAVEGLTDTLRQLGFETGRLKTGTPARVDRRSVDFSVMERQPGDPDVRWFSFDP CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCEEEEECC EVWVPREQMDCYLTRTTPETHRIIRENLHETPVYGGWVEAKGPRYCPSIEDKIVRFADKE CEECCHHHCCEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHCCCC SHQIFIEPEGRDLPELYIQGFSTGMPEKIQIQMLRSLPGLERCVMLRPAYAVEYDYLPAT CCEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHEECCCCEEEECCCCHH QLYPTLMTKKVQGLFCAGQINGTTGYEEAAAQGLIAGINAARLVQGKPLVTLPRESSYIG HHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHEECCCCEEECCCCCCHHH TLIDDLCTKELREPYRMLTSRSEYRLILRSDNADQRLTPLGREWGLIDDRRWALFQAKQA HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH RIAAEIERLETQRVKAHDLAGIQLSQLTGQGIKGSATLAEILRRNQIHYSDLLELGLGDA HHHHHHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCC ELDPFEQEAAEIAVKYSGYIQRQQSQIEQVSKQYHRPLPPDLDYHSIPTLSKESRDKLSA CCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH VRPLTVGQAARIGGVNPADINALLIYLEVRQRQRAADPVCSSL CCCCCCCCHHHCCCCCCCCCEEEEEEEEHHHHHHHCCHHHHCC >Mature Secondary Structure MLRVGRDSIDFLDHYDVVVVGGGHSGCEAALAAARLGCNTLMLTLNLDKIAWQPCNPAVG CCCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCC GPAKSQLVHEIDALGGEMGKVTDRTYLQKRVLNRSRGPAVWALRAQTDKREYARVMRSVV CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH ENQPNLTIREGTVTDLVLGRNDEVVGVVTHFGTIFGCRAVILTTGTFLGGRIWIGRHWQA CCCCCEEEECCCEEEEEECCCCCEEEHHHHHHHHHHHHHHEEECCCCCCCEEEEECCCCC AGRAGEFAVEGLTDTLRQLGFETGRLKTGTPARVDRRSVDFSVMERQPGDPDVRWFSFDP CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCEEEEECC EVWVPREQMDCYLTRTTPETHRIIRENLHETPVYGGWVEAKGPRYCPSIEDKIVRFADKE CEECCHHHCCEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHCCCC SHQIFIEPEGRDLPELYIQGFSTGMPEKIQIQMLRSLPGLERCVMLRPAYAVEYDYLPAT CCEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHEECCCCEEEECCCCHH QLYPTLMTKKVQGLFCAGQINGTTGYEEAAAQGLIAGINAARLVQGKPLVTLPRESSYIG HHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHEECCCCEEECCCCCCHHH TLIDDLCTKELREPYRMLTSRSEYRLILRSDNADQRLTPLGREWGLIDDRRWALFQAKQA HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH RIAAEIERLETQRVKAHDLAGIQLSQLTGQGIKGSATLAEILRRNQIHYSDLLELGLGDA HHHHHHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCC ELDPFEQEAAEIAVKYSGYIQRQQSQIEQVSKQYHRPLPPDLDYHSIPTLSKESRDKLSA CCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH VRPLTVGQAARIGGVNPADINALLIYLEVRQRQRAADPVCSSL CCCCCCCCHHHCCCCCCCCCEEEEEEEEHHHHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA