| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is yycG [H]
Identifier: 86610215
GI number: 86610215
Start: 2887174
End: 2888088
Strand: Direct
Name: yycG [H]
Synonym: CYB_2791
Alternate gene names: 86610215
Gene position: 2887174-2888088 (Clockwise)
Preceding gene: 86610213
Following gene: 86610217
Centisome position: 94.76
GC content: 58.8
Gene sequence:
>915_bases TTGGCCCTGGCCGATCACCTCTCCATCGCCATTCGGCAGGCGGAATTGCTCCAACAGGTTCAGGAGCTGAACCGCACCCT GGAAGAAAAGGTACAGGCCCGCACCGCCCAACTGGATCGCCAGATACAGGAATTGCATCGGCTGGATTGCCTGAAAGATG ACTTCCTTAGCACGGTGTCCCACGAGCTGCGCACCCCTCTTTCCAACATGAAAATGGCCATCCGCCTGCTCAGCTCCGTC CTGCTGCCTGCCCAGGGCGCTCCCAGATCCCCGGATCCGGCCAAAATCTCTCAGTACTTGAAGGTGTTGGACAACGAATG TGAGCGGGAGATCAGACTGGTCGAGGATCTGCTGGAACTGCAGCAGTTAGAGGTGCTCAAGGGACTCCGTCCCGCTAACG CGAACGGTTCACAGCGGCCCTGCTGGTTGGAGCTGCAAGAGTGGTTGCCCCAGATCGCGGAGCCCTTTGCTCAGGAGGCC CATAGCCGCCATCAGCGCTTCAGCCTTGGGATCCCTTCAGGACTGCCTGCCATTTTTACCCTGCCGGGAGTGCTAAAGTC GGTGCTGGCGGAATTGCTGAAAAATGCATGTAAATTCACCCCTGCTGGGCACCTGATCAGCCTTCAGGCCACCTGCCATT CCGACCACCTGGACATCCAAGTCCTCAACACCGGCGTAACCATTCCTCCAGAAGAACAAAAGCGGGTATTCGAGAAGTTC TATCGGGTGCCCAGCGTGGATCCCTGGCGGCAAGGGGGGACAGGGTTGGGGTTGGCCCTTGTGCAGCAGCGGGTAAGCCT GTTGCAAGGAAGCATTCACCTCAACAGCGAGGCCAACCACACCTGCTTTACCTTGCGGCTGCCTCGGGTTCTCCCTGTCT TTGGCCAAGGCAAGCCAGCTCAGCCTAGGGTGTAG
Upstream 100 bases:
>100_bases TAGCCACTAGTCACTAGCCACTAATAGAGTGCGGGGCTCCTGCGGGTTCTAGCTGAAAACAGCACGTCCCGGTTGGCTGG CCACCAATCAGGATCTGATC
Downstream 100 bases:
>100_bases GCGTCGGGGTGGCCGGCTTTGGAGAGTTGGAAGCTTCCCCTTCCTGCAAAACTTCTTGCAAGCGGGCCCGAACCCGCTGG TTGAGAACAGGATTTTCGTT
Product: sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MALADHLSIAIRQAELLQQVQELNRTLEEKVQARTAQLDRQIQELHRLDCLKDDFLSTVSHELRTPLSNMKMAIRLLSSV LLPAQGAPRSPDPAKISQYLKVLDNECEREIRLVEDLLELQQLEVLKGLRPANANGSQRPCWLELQEWLPQIAEPFAQEA HSRHQRFSLGIPSGLPAIFTLPGVLKSVLAELLKNACKFTPAGHLISLQATCHSDHLDIQVLNTGVTIPPEEQKRVFEKF YRVPSVDPWRQGGTGLGLALVQQRVSLLQGSIHLNSEANHTCFTLRLPRVLPVFGQGKPAQPRV
Sequences:
>Translated_304_residues MALADHLSIAIRQAELLQQVQELNRTLEEKVQARTAQLDRQIQELHRLDCLKDDFLSTVSHELRTPLSNMKMAIRLLSSV LLPAQGAPRSPDPAKISQYLKVLDNECEREIRLVEDLLELQQLEVLKGLRPANANGSQRPCWLELQEWLPQIAEPFAQEA HSRHQRFSLGIPSGLPAIFTLPGVLKSVLAELLKNACKFTPAGHLISLQATCHSDHLDIQVLNTGVTIPPEEQKRVFEKF YRVPSVDPWRQGGTGLGLALVQQRVSLLQGSIHLNSEANHTCFTLRLPRVLPVFGQGKPAQPRV >Mature_303_residues ALADHLSIAIRQAELLQQVQELNRTLEEKVQARTAQLDRQIQELHRLDCLKDDFLSTVSHELRTPLSNMKMAIRLLSSVL LPAQGAPRSPDPAKISQYLKVLDNECEREIRLVEDLLELQQLEVLKGLRPANANGSQRPCWLELQEWLPQIAEPFAQEAH SRHQRFSLGIPSGLPAIFTLPGVLKSVLAELLKNACKFTPAGHLISLQATCHSDHLDIQVLNTGVTIPPEEQKRVFEKFY RVPSVDPWRQGGTGLGLALVQQRVSLLQGSIHLNSEANHTCFTLRLPRVLPVFGQGKPAQPRV
Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH and ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1789149, Length=276, Percent_Identity=27.536231884058, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI145693157, Length=239, Percent_Identity=28.8702928870293, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI87082128, Length=247, Percent_Identity=25.5060728744939, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1786600, Length=280, Percent_Identity=27.1428571428571, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790346, Length=262, Percent_Identity=25.1908396946565, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI87081816, Length=281, Percent_Identity=27.7580071174377, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1786783, Length=257, Percent_Identity=28.0155642023346, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790861, Length=243, Percent_Identity=25.9259259259259, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI48994928, Length=246, Percent_Identity=27.6422764227642, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786912, Length=245, Percent_Identity=27.3469387755102, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1788713, Length=245, Percent_Identity=24.8979591836735, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1790436, Length=233, Percent_Identity=27.0386266094421, Blast_Score=68, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 34063; Mature: 33932
Theoretical pI: Translated: 7.90; Mature: 7.90
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALADHLSIAIRQAELLQQVQELNRTLEEKVQARTAQLDRQIQELHRLDCLKDDFLSTVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HELRTPLSNMKMAIRLLSSVLLPAQGAPRSPDPAKISQYLKVLDNECEREIRLVEDLLEL HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQLEVLKGLRPANANGSQRPCWLELQEWLPQIAEPFAQEAHSRHQRFSLGIPSGLPAIFT HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH LPGVLKSVLAELLKNACKFTPAGHLISLQATCHSDHLDIQVLNTGVTIPPEEQKRVFEKF HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHH YRVPSVDPWRQGGTGLGLALVQQRVSLLQGSIHLNSEANHTCFTLRLPRVLPVFGQGKPA HCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCEEEEEECCCHHHHCCCCCCC QPRV CCCC >Mature Secondary Structure ALADHLSIAIRQAELLQQVQELNRTLEEKVQARTAQLDRQIQELHRLDCLKDDFLSTVS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HELRTPLSNMKMAIRLLSSVLLPAQGAPRSPDPAKISQYLKVLDNECEREIRLVEDLLEL HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQLEVLKGLRPANANGSQRPCWLELQEWLPQIAEPFAQEAHSRHQRFSLGIPSGLPAIFT HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH LPGVLKSVLAELLKNACKFTPAGHLISLQATCHSDHLDIQVLNTGVTIPPEEQKRVFEKF HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHH YRVPSVDPWRQGGTGLGLALVQQRVSLLQGSIHLNSEANHTCFTLRLPRVLPVFGQGKPA HCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCEEEEEECCCHHHHCCCCCCC QPRV CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377; 9829949; 10878122; 11758928 [H]