BacMap

Definition	Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession	NC_007776
Length	3,046,682

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The map label for this gene is cbpA [C]

Identifier: 86610207

GI number: 86610207

Start: 2878709

End: 2879668

Strand: Direct

Name: cbpA [C]

Synonym: CYB_2782

Alternate gene names: 86610207

Gene position: 2878709-2879668 (Clockwise)

Preceding gene: 86610206

Following gene: 86610209

Centisome position: 94.49

GC content: 57.08

Gene sequence:

>960_bases
ATGCAAAACTTTAAGGACTACTACAAGATTTTGGGGGTCAGCAAAACGGCCACTGCCGATGAGGTGAAACAAGCCTATCG
GCGCCTAGCCCGCAAGTATCACCCAGATGTCAACCCCAACGACAAAGCGGCTGAAGAGAAATTCAAAGACATTAACGAAG
CCTACGAAGTTCTCTCGGATCCCAGCAAGCGCAGGCAATACGACCAATTTGGCCAATACTATCAGCAGGGCGGGTTTCGC
TCCAGCCGCGATGCCTACACCTACAGCAGCAGCCCCTTCAGCCAAGACTTTGGGGGGAGCGGATTTGGGGGGAGTGGCGT
CGATTTCAGCCAATTTGATGATTTTCAAGACTTCATCGATCAACTGCTGGGCCGGGTGCGCAGCCAAACCGCAGACCGCA
GCAGCGGATTTTCGGGATCCACTGGCAACACCAGTTACGATGCTGAGGCCACCATCCAGATCAGCATTCCAGAAGCTTTT
GAGGGGGGCAAGCGTCGCCTGCGGGTGGGCGGGGATCGCGTGCTCGAGGTAAACATCCCGCCGGGAATTACGCCAGGGAA
GCGGATTCGCCTGCGCGGCCAAGGCCACCCCAACCCCAACGGCGGTGCCGGTGATCTGTACCTTAAAATTGAGCTGAAAG
ACCACCCCTTCTATCGCCTAGAGGGATTCGACGTTTACTGCGATCTGCCCATCAGCCCCAGCGAAGCGGTTTTGGGCGCC
CAGGTGGAAGTGCCCACCTTGGATGGGGTGGTGAAGCTGCGGATCCCACCTGGCATGCAGCCGGGGCGAAAGTTGCGGCT
GGCGGAAAGGGGATTTCCCAAAGGCAACGGAGAACGGGGGGATTTTTACGTGGTGGTGCAGATCCATTTGCCCACCCAGA
TCTCCGAAGAAGAGCGAGAACTTTACGAAAAGCTGCAGCGGGTTCAATCCTACGATCCCCGCGCCACCCTTAAGCTCTAG

Upstream 100 bases:

>100_bases
CTCATTTTCTTCAGTAGGTCGGAGGGAAGGAGCCCTTGCCGGGGACGCCTAGCCTCGTGGTTTTCTGCCCACTCTCAGCG
ATTTGCCTGCGGACGCCTCC

Downstream 100 bases:

>100_bases
CATTGATATTCTCCGATATTCTCCCACGGCCAAAGCCTCAAGATTCTTGACAAGCGCTCCGCGCCGCCTGAAAGCAGGAA
GCCGCCCTTCTAGCTTGCTT

Product: DnaJ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MQNFKDYYKILGVSKTATADEVKQAYRRLARKYHPDVNPNDKAAEEKFKDINEAYEVLSDPSKRRQYDQFGQYYQQGGFR
SSRDAYTYSSSPFSQDFGGSGFGGSGVDFSQFDDFQDFIDQLLGRVRSQTADRSSGFSGSTGNTSYDAEATIQISIPEAF
EGGKRRLRVGGDRVLEVNIPPGITPGKRIRLRGQGHPNPNGGAGDLYLKIELKDHPFYRLEGFDVYCDLPISPSEAVLGA
QVEVPTLDGVVKLRIPPGMQPGRKLRLAERGFPKGNGERGDFYVVVQIHLPTQISEEERELYEKLQRVQSYDPRATLKL

Sequences:

>Translated_319_residues
MQNFKDYYKILGVSKTATADEVKQAYRRLARKYHPDVNPNDKAAEEKFKDINEAYEVLSDPSKRRQYDQFGQYYQQGGFR
SSRDAYTYSSSPFSQDFGGSGFGGSGVDFSQFDDFQDFIDQLLGRVRSQTADRSSGFSGSTGNTSYDAEATIQISIPEAF
EGGKRRLRVGGDRVLEVNIPPGITPGKRIRLRGQGHPNPNGGAGDLYLKIELKDHPFYRLEGFDVYCDLPISPSEAVLGA
QVEVPTLDGVVKLRIPPGMQPGRKLRLAERGFPKGNGERGDFYVVVQIHLPTQISEEERELYEKLQRVQSYDPRATLKL
>Mature_319_residues
MQNFKDYYKILGVSKTATADEVKQAYRRLARKYHPDVNPNDKAAEEKFKDINEAYEVLSDPSKRRQYDQFGQYYQQGGFR
SSRDAYTYSSSPFSQDFGGSGFGGSGVDFSQFDDFQDFIDQLLGRVRSQTADRSSGFSGSTGNTSYDAEATIQISIPEAF
EGGKRRLRVGGDRVLEVNIPPGITPGKRIRLRGQGHPNPNGGAGDLYLKIELKDHPFYRLEGFDVYCDLPISPSEAVLGA
QVEVPTLDGVVKLRIPPGMQPGRKLRLAERGFPKGNGERGDFYVVVQIHLPTQISEEERELYEKLQRVQSYDPRATLKL

Specific function: DNA-Binding Protein That Preferentially Recognizes A Curved DNA Sequence. It Is Probably A Functional Analog Of Dnaj; Displays Overlapping Activities With Dnaj, But Functions Under Different Conditions, Probably Acting As A Molecular Chaperone In An Adapt

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI6631085, Length=335, Percent_Identity=30.1492537313433, Blast_Score=144, Evalue=9e-35,
Organism=Homo sapiens, GI201862587, Length=342, Percent_Identity=30.9941520467836, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI201862518, Length=342, Percent_Identity=30.9941520467836, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI56549115, Length=342, Percent_Identity=30.9941520467836, Blast_Score=135, Evalue=5e-32,
Organism=Homo sapiens, GI7706495, Length=319, Percent_Identity=30.4075235109718, Blast_Score=135, Evalue=6e-32,
Organism=Homo sapiens, GI5453690, Length=341, Percent_Identity=30.4985337243402, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI205360840, Length=351, Percent_Identity=28.4900284900285, Blast_Score=127, Evalue=9e-30,
Organism=Homo sapiens, GI205360838, Length=351, Percent_Identity=28.4900284900285, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI39204547, Length=327, Percent_Identity=26.605504587156, Blast_Score=118, Evalue=6e-27,
Organism=Homo sapiens, GI194328760, Length=280, Percent_Identity=28.5714285714286, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI194328758, Length=280, Percent_Identity=28.5714285714286, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI4504511, Length=349, Percent_Identity=27.5071633237822, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI194306642, Length=115, Percent_Identity=46.0869565217391, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI194306640, Length=115, Percent_Identity=46.0869565217391, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI27151736, Length=67, Percent_Identity=56.7164179104478, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI88501736, Length=67, Percent_Identity=56.7164179104478, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI24308127, Length=95, Percent_Identity=44.2105263157895, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI29126218, Length=64, Percent_Identity=56.25, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI45504382, Length=64, Percent_Identity=51.5625, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI47777312, Length=104, Percent_Identity=44.2307692307692, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4885495, Length=66, Percent_Identity=56.0606060606061, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI17388799, Length=66, Percent_Identity=56.0606060606061, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI23503241, Length=89, Percent_Identity=47.1910112359551, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI5031741, Length=74, Percent_Identity=54.0540540540541, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI56687498, Length=66, Percent_Identity=53.030303030303, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI21553335, Length=74, Percent_Identity=48.6486486486487, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI9558755, Length=120, Percent_Identity=41.6666666666667, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI72534740, Length=75, Percent_Identity=48, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI68077168, Length=77, Percent_Identity=48.0519480519481, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI68077166, Length=77, Percent_Identity=48.0519480519481, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI22749377, Length=71, Percent_Identity=47.887323943662, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI217035105, Length=71, Percent_Identity=47.887323943662, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1787235, Length=326, Percent_Identity=35.8895705521472, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1786197, Length=342, Percent_Identity=34.2105263157895, Blast_Score=181, Evalue=5e-47,
Organism=Caenorhabditis elegans, GI17534355, Length=332, Percent_Identity=33.1325301204819, Blast_Score=145, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI17554644, Length=66, Percent_Identity=62.1212121212121, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI212645553, Length=68, Percent_Identity=55.8823529411765, Blast_Score=88, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17553096, Length=64, Percent_Identity=59.375, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17553098, Length=64, Percent_Identity=59.375, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115532476, Length=69, Percent_Identity=52.1739130434783, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17568643, Length=66, Percent_Identity=54.5454545454545, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI115532378, Length=115, Percent_Identity=36.5217391304348, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17507263, Length=63, Percent_Identity=53.968253968254, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17538236, Length=71, Percent_Identity=49.2957746478873, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17554900, Length=65, Percent_Identity=43.0769230769231, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17551190, Length=69, Percent_Identity=56.5217391304348, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324321, Length=346, Percent_Identity=28.9017341040462, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6320888, Length=114, Percent_Identity=44.7368421052632, Blast_Score=86, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6324265, Length=66, Percent_Identity=62.1212121212121, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6323870, Length=67, Percent_Identity=55.2238805970149, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322194, Length=100, Percent_Identity=44, Blast_Score=83, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6322388, Length=69, Percent_Identity=55.0724637681159, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323119, Length=67, Percent_Identity=52.2388059701493, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323813, Length=67, Percent_Identity=52.2388059701493, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324252, Length=71, Percent_Identity=43.6619718309859, Blast_Score=66, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324103, Length=83, Percent_Identity=45.7831325301205, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321094, Length=66, Percent_Identity=57.5757575757576, Blast_Score=62, Evalue=1e-10,
Organism=Drosophila melanogaster, GI85726398, Length=350, Percent_Identity=30.2857142857143, Blast_Score=137, Evalue=7e-33,
Organism=Drosophila melanogaster, GI24658562, Length=336, Percent_Identity=30.6547619047619, Blast_Score=125, Evalue=5e-29,
Organism=Drosophila melanogaster, GI24658555, Length=336, Percent_Identity=30.6547619047619, Blast_Score=125, Evalue=5e-29,
Organism=Drosophila melanogaster, GI18858081, Length=343, Percent_Identity=29.7376093294461, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24646562, Length=339, Percent_Identity=28.3185840707965, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24646560, Length=339, Percent_Identity=28.3185840707965, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24646558, Length=339, Percent_Identity=28.3185840707965, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24646556, Length=339, Percent_Identity=28.3185840707965, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI21357547, Length=339, Percent_Identity=28.3185840707965, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI45552811, Length=128, Percent_Identity=38.28125, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI45549272, Length=128, Percent_Identity=38.28125, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI45552813, Length=128, Percent_Identity=38.28125, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24654066, Length=68, Percent_Identity=60.2941176470588, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24654070, Length=68, Percent_Identity=60.2941176470588, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24654068, Length=68, Percent_Identity=60.2941176470588, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24654072, Length=68, Percent_Identity=60.2941176470588, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI19920464, Length=68, Percent_Identity=55.8823529411765, Blast_Score=85, Evalue=8e-17,
Organism=Drosophila melanogaster, GI17737735, Length=88, Percent_Identity=45.4545454545455, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28574723, Length=88, Percent_Identity=45.4545454545455, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24668523, Length=88, Percent_Identity=45.4545454545455, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=62.5, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI20129487, Length=96, Percent_Identity=44.7916666666667, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24584014, Length=96, Percent_Identity=44.7916666666667, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24668492, Length=68, Percent_Identity=51.4705882352941, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21355911, Length=66, Percent_Identity=54.5454545454545, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24641698, Length=64, Percent_Identity=51.5625, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24641696, Length=64, Percent_Identity=51.5625, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24584630, Length=69, Percent_Identity=49.2753623188406, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17648033, Length=69, Percent_Identity=49.2753623188406, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358273, Length=71, Percent_Identity=49.2957746478873, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 35786; Mature: 35786

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNFKDYYKILGVSKTATADEVKQAYRRLARKYHPDVNPNDKAAEEKFKDINEAYEVLSD
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
PSKRRQYDQFGQYYQQGGFRSSRDAYTYSSSPFSQDFGGSGFGGSGVDFSQFDDFQDFID
CHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
QLLGRVRSQTADRSSGFSGSTGNTSYDAEATIQISIPEAFEGGKRRLRVGGDRVLEVNIP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCEEEEECCCEEEEEECC
PGITPGKRIRLRGQGHPNPNGGAGDLYLKIELKDHPFYRLEGFDVYCDLPISPSEAVLGA
CCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEECEEEEECCCCCCCCHHCCC
QVEVPTLDGVVKLRIPPGMQPGRKLRLAERGFPKGNGERGDFYVVVQIHLPTQISEEERE
EEECCCCCCEEEEEECCCCCCCCEEEHHHCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
LYEKLQRVQSYDPRATLKL
HHHHHHHHHCCCCCEEECC
>Mature Secondary Structure
MQNFKDYYKILGVSKTATADEVKQAYRRLARKYHPDVNPNDKAAEEKFKDINEAYEVLSD
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
PSKRRQYDQFGQYYQQGGFRSSRDAYTYSSSPFSQDFGGSGFGGSGVDFSQFDDFQDFID
CHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
QLLGRVRSQTADRSSGFSGSTGNTSYDAEATIQISIPEAFEGGKRRLRVGGDRVLEVNIP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCEEEEECCCEEEEEECC
PGITPGKRIRLRGQGHPNPNGGAGDLYLKIELKDHPFYRLEGFDVYCDLPISPSEAVLGA
CCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEECEEEEECCCCCCCCHHCCC
QVEVPTLDGVVKLRIPPGMQPGRKLRLAERGFPKGNGERGDFYVVVQIHLPTQISEEERE
EEECCCCCCEEEEEECCCCCCCCEEEHHHCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
LYEKLQRVQSYDPRATLKL
HHHHHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]