| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is pstS-3 [H]
Identifier: 86610205
GI number: 86610205
Start: 2875217
End: 2876317
Strand: Direct
Name: pstS-3 [H]
Synonym: CYB_2780
Alternate gene names: 86610205
Gene position: 2875217-2876317 (Clockwise)
Preceding gene: 86610203
Following gene: 86610206
Centisome position: 94.37
GC content: 62.31
Gene sequence:
>1101_bases ATGGCTCAACTGCCCCGCTTCCGTCGCCGAGAAGTGTTGCTTTCTTTATTGGCCACCGGCGCTACCTTGAGCGCCTGCCA AAGGGGATCCCGTTCTGACCAACCCAGCGGCAGGGATCCCGTTCCTGCCTCCGGCAGCCAGTCCTCCGACAAAGTTTTGC TGATCAACGGAGCCGGGTCCACCTTTCCGGCTCCTCTTTACTTGCGCTGGTTTTCCGATTACCGCCAGGTGGATCCCAAG GTGGAGATCAATTTCCAACCGGTGGGCAGCGCCGCTGGGATCCGGCAATTTATTGACCAGACAGTGGACTTTGCCGCCAG TGATGTGGCCATGACCGATGCCGAGATCGCCGAGGTGAAGCGGGGTGTGGTCATGATCCCGATGACCGCAGGCAGCATTG CCGTAGGCTACAACCTGCCGGGGATCCCTTCTGGACTCAAGCTGTCTCGACCCGTTTTGGTGAAGATCTTTCGCGGCCAA ATCGACCAGTGGCGGGATCCGGAGATCCTGGCCCTGAACCCGGAGCTAACCATTCCCGATCTGCCCATCACCGTCTGCTA CCGCTCCGATGGCAGCGGCACCACCGATACCTTTACCCGCCACCTGGCGGCCATCGATCCGGCTTGGGCCTCAGAAATCG GTGTTGGCATGTCGCTAGAGTGGCCGGTGGGCATTGGGGTAAAGGGCAACGAGGGCATGAGCGCCCAAATGCTCCTCAGC GAAGGGGTGATCGGCTACGTGGAGTCGGTCTATGCCTGCGAGCTGGATCTGTCGGTGGCAGCTCTGGAGAACCGCCGCGG CGAGTTCATTCTCCCCTCCCCGGAAGCCTCGGCCCTGGCCTTGAGCGAAATTGAGCTGCCGGAAAACCTGCGGGCTTTTG TGCCGGATCCCGCTGGCCCTGGAGCGTATCCCATCGTCACCTACACCTGGATCCTGACCTACCGCCGGTACTCGGATCCC GCCATGGCCGCCGCCCTGCAAGCTGTGCTCCGCTGGGCCCTTGCCGAAGGACAAGCCCTGGCCGAGGAGATGGGCTACCT GCCCCTGGCCGCAACCGTTGTGAACCGCGGCCTGGAGGCGCTGCAGCTTATCCAGAGCTAG
Upstream 100 bases:
>100_bases TGGGCCACGCACGGGATCCCAAGAGCTCTCGCCGGCAACCCTTGACAGGGCCCCGCAGGCAAGACAAGGATCGGGGCGGT GACCTCGGAGAACCTGAACC
Downstream 100 bases:
>100_bases CCTGGCAGTAGTCCCCCAAGAGTTGCCAATAGCTGCCAACCCAGGCCATACCCCAAGCGGCACCGAAAGCAAGGCTGCTG CAGGTACGGAGATCCGTAAC
Product: phosphate ABC transporter, periplasmic phosphate-binding protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP [H]
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MAQLPRFRRREVLLSLLATGATLSACQRGSRSDQPSGRDPVPASGSQSSDKVLLINGAGSTFPAPLYLRWFSDYRQVDPK VEINFQPVGSAAGIRQFIDQTVDFAASDVAMTDAEIAEVKRGVVMIPMTAGSIAVGYNLPGIPSGLKLSRPVLVKIFRGQ IDQWRDPEILALNPELTIPDLPITVCYRSDGSGTTDTFTRHLAAIDPAWASEIGVGMSLEWPVGIGVKGNEGMSAQMLLS EGVIGYVESVYACELDLSVAALENRRGEFILPSPEASALALSEIELPENLRAFVPDPAGPGAYPIVTYTWILTYRRYSDP AMAAALQAVLRWALAEGQALAEEMGYLPLAATVVNRGLEALQLIQS
Sequences:
>Translated_366_residues MAQLPRFRRREVLLSLLATGATLSACQRGSRSDQPSGRDPVPASGSQSSDKVLLINGAGSTFPAPLYLRWFSDYRQVDPK VEINFQPVGSAAGIRQFIDQTVDFAASDVAMTDAEIAEVKRGVVMIPMTAGSIAVGYNLPGIPSGLKLSRPVLVKIFRGQ IDQWRDPEILALNPELTIPDLPITVCYRSDGSGTTDTFTRHLAAIDPAWASEIGVGMSLEWPVGIGVKGNEGMSAQMLLS EGVIGYVESVYACELDLSVAALENRRGEFILPSPEASALALSEIELPENLRAFVPDPAGPGAYPIVTYTWILTYRRYSDP AMAAALQAVLRWALAEGQALAEEMGYLPLAATVVNRGLEALQLIQS >Mature_365_residues AQLPRFRRREVLLSLLATGATLSACQRGSRSDQPSGRDPVPASGSQSSDKVLLINGAGSTFPAPLYLRWFSDYRQVDPKV EINFQPVGSAAGIRQFIDQTVDFAASDVAMTDAEIAEVKRGVVMIPMTAGSIAVGYNLPGIPSGLKLSRPVLVKIFRGQI DQWRDPEILALNPELTIPDLPITVCYRSDGSGTTDTFTRHLAAIDPAWASEIGVGMSLEWPVGIGVKGNEGMSAQMLLSE GVIGYVESVYACELDLSVAALENRRGEFILPSPEASALALSEIELPENLRAFVPDPAGPGAYPIVTYTWILTYRRYSDPA MAAALQAVLRWALAEGQALAEEMGYLPLAATVVNRGLEALQLIQS
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
Organism=Escherichia coli, GI2367271, Length=303, Percent_Identity=34.6534653465347, Blast_Score=200, Evalue=1e-52,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005673 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39363; Mature: 39232
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQLPRFRRREVLLSLLATGATLSACQRGSRSDQPSGRDPVPASGSQSSDKVLLINGAGS CCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC TFPAPLYLRWFSDYRQVDPKVEINFQPVGSAAGIRQFIDQTVDFAASDVAMTDAEIAEVK CCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH RGVVMIPMTAGSIAVGYNLPGIPSGLKLSRPVLVKIFRGQIDQWRDPEILALNPELTIPD CCEEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCC LPITVCYRSDGSGTTDTFTRHLAAIDPAWASEIGVGMSLEWPVGIGVKGNEGMSAQMLLS CCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCEEECCCEEECCCCCCCCCHHHHHH EGVIGYVESVYACELDLSVAALENRRGEFILPSPEASALALSEIELPENLRAFVPDPAGP CCHHHHHHHHEEEEECCEEEEHHCCCCCEEECCCCCCEEEEECCCCCCHHHEECCCCCCC GAYPIVTYTWILTYRRYSDPAMAAALQAVLRWALAEGQALAEEMGYLPLAATVVNRGLEA CCCHHHEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCHHH LQLIQS HHHHCC >Mature Secondary Structure AQLPRFRRREVLLSLLATGATLSACQRGSRSDQPSGRDPVPASGSQSSDKVLLINGAGS CCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC TFPAPLYLRWFSDYRQVDPKVEINFQPVGSAAGIRQFIDQTVDFAASDVAMTDAEIAEVK CCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH RGVVMIPMTAGSIAVGYNLPGIPSGLKLSRPVLVKIFRGQIDQWRDPEILALNPELTIPD CCEEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCC LPITVCYRSDGSGTTDTFTRHLAAIDPAWASEIGVGMSLEWPVGIGVKGNEGMSAQMLLS CCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCEEECCCEEECCCCCCCCCHHHHHH EGVIGYVESVYACELDLSVAALENRRGEFILPSPEASALALSEIELPENLRAFVPDPAGP CCHHHHHHHHEEEEECCEEEEHHCCCCCEEECCCCCCEEEEECCCCCCHHHEECCCCCCC GAYPIVTYTWILTYRRYSDPAMAAALQAVLRWALAEGQALAEEMGYLPLAATVVNRGLEA CCCHHHEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCHHH LQLIQS HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]