| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86610170
Identifier: 86610170
GI number: 86610170
Start: 2838369
End: 2840609
Strand: Direct
Name: 86610170
Synonym: CYB_2744
Alternate gene names: NA
Gene position: 2838369-2840609 (Clockwise)
Preceding gene: 86610168
Following gene: 86610171
Centisome position: 93.16
GC content: 45.29
Gene sequence:
>2241_bases ATGAATTTACTCCAGAAGAAAGTTGAGGTTACTCTTAATCGCTTCTTCGTCAAGGAGCTAACTCAAGAAGAGCTCACCTT CTATGAGTATAGTTGCAGGCCAAACCCTCTTCCAGATCTAGGAGAGGAGCAGAGGGCTCTCTCCAAGATTTGTAATCAGC TAGGTGTAATGGCTGTTCGTCTGGGAAATCGCATCATAACCCGAGAAAAAGTTCCGGCCAGTAAACTCAAAACAGAGGAA TGGGAGTTGGAAGAGCTTGGTTCTAAGGCTCTAGATTGTACAGACCCTACAGAGAGACAGGCTCTAGAAACTTTCGAGCG CAAGAAACTAGATTGGAGTCTAAGATCTAAGTACAAAAGAACAGAGATTGAGCGATCAACAGGAGGAGGATTGATCTGGT GGGTTACGGGTCTGGAAGGAGTAGAACGGATTGAGGACTCGGAAGGAGTAAAACCACTTTGCGGAGATGGGTGGGAGGTT CACAGAGGAAGAGAGCTAGACGTTGTTATTAGACAAGATAAGAAGCTCTATCTAGAGATCGACATCCGATACCATTTCTA CAGCCCATGGACGCTGCATGAGTGGCTGGAAAATTACCCAGATGTCTCAATTGAAATTGTACGAAACACATACAGGACAA AAAATAATAAATACCCAACTTGGGAGTATCGAGGCATTATTTCCAATCAGTCGCCAAGGGAAGTATGGTTAGCGGAGCTA AACACTAGCTTAGCGGATTATCATGTACAGAAGTACGGAGCAACTCCAGAAGAAGTTGATGGCTCTCTGGTGGTTCAAGT GGTCTCGAGAGAACGCAATTTCAGACAAAAGGCAGAGCCTATCCTTCATCTATCGCGGAGACTGTCGCCTGTTTTAACTT TGGAGATGCTAGCAAGTATAGAAGATCAAAGATGGACTGGCAAAAAAGTTAGCTCCTTGGTTAGCGAGCACATCAGAAAA AGTTTAGAAGAGAGATTGAAAGAGTCTAAAGAGACCGCAAAAACTATTATAGAAAATGTCTACAATATTTCTGACTTTCA GGCTGATCCCCTAAAAGCAGAAGGATACATTATGCCAAGTCCAAGGCTATTGGGGTTTGGTCATAGACAAGTCCAAAACC CCGCGAGAGTTAGGTACCAAGGATGTGCAAGAGTTGGCGAGACAAAGTTTGGACTTCTAAATCTTGACGATAATAAACGT GAGTATCCTACTGAGGTTCGCAAGTGCCTACTTGAAGTAGCTAAAAAGAGCGGAGCAAGAGTTGAAATAGACTTTTACGC AACCCGTCAAGATTTGCCTGAAGGCGACCTTGCTCAACAGAGGTTTTGGCAAAGCTGGGCCGACAAAGGGATCAAAACCG TTCTGGTTGTCATGCCCTTGTCGCCTAATGAGCACAAGCAAAAGATCCGCTTGCAAGCACTTCGAGCAGGAATAGCAACT CAGTTTATGATTCCTGGAGCTGACCCCTACAAAGCTCTAAATGTCGTACTAGGACTTCTGTGTAAAGCTGCGTGGCAACC CGTGTTGCTTGAACCCCTCGATCATCCTGAGTGCTCCGAGCTTACCATTGGTTTTGATGTGGGGACGAATCGAGAGCTTT ACTACGGAACCTCTGCCTTCGCGGTACTGGCCAATGGTCAAAGCTTAGGCTGGGAGTTGCCCGATATACAAAGAGGAGAA ACTTTTTCCGGCGAGGCAATTTATCAAACCGTGTCCAAGCTCGTCAATAGATTCTACAACAAATTTCATCGATACCCTAG AAAGGTTCTTTTGATGAGGGATGGCTTAGTTCAAAGAGGCGAATTTGATAAAACAATTGAGGAACTAAGAAAAGAAAAGA TTGCTGTGGATATTGTTGGAGTGCGCAAAAGTGGCACAGTCAGAATGGGAAGAGAGGAAAAAGGAAGCTATAGAGACGCT GCAATGGGCACTGTCATTTTTGACCATGAACGAAGGTCATTTATGCTCGTAACAAGCCAGCCCATTAAGAAGTCCTCGGT GCCAATTGGCAGCGCAAGACCGCTGCGAGTTGTCCATGAACACGGCAACACTCCTTTGGAAGTTCTGGCTATACAAACTT ACCATCTCTCCCAGCTTCATCCCGCCAGTGGTTTTCAAGCCTGTAGGCTTCCTTGGGTATTGCACTTTGCCGACAAAAGC AGTAAAGAGTTCCAGCGCATTGGCAACAGCATTTTTAGTGTGCTGCAGAACATAAACCGAGAGAAGTTGATTGCCGTCTA G
Upstream 100 bases:
>100_bases TTGGCTCCGCCAGGGTTGTTTGGAGATCCCTCGTGAAGAGCAGGAGAATTAGAGCTTATCCTAGAGATCCTAGAGAGAAA CTTGAAACTAGAGTCTGCCA
Downstream 100 bases:
>100_bases CCAAGGGAGGGGATCCCCACCTGCCGGCCTTGCTAGGATTGGGGGGGTGGTTGGTGTTGCGGCTATGGAGATGAATGAGG TCTGGAAGACCTTTCTGAGC
Product: piwi domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 746; Mature: 746
Protein sequence:
>746_residues MNLLQKKVEVTLNRFFVKELTQEELTFYEYSCRPNPLPDLGEEQRALSKICNQLGVMAVRLGNRIITREKVPASKLKTEE WELEELGSKALDCTDPTERQALETFERKKLDWSLRSKYKRTEIERSTGGGLIWWVTGLEGVERIEDSEGVKPLCGDGWEV HRGRELDVVIRQDKKLYLEIDIRYHFYSPWTLHEWLENYPDVSIEIVRNTYRTKNNKYPTWEYRGIISNQSPREVWLAEL NTSLADYHVQKYGATPEEVDGSLVVQVVSRERNFRQKAEPILHLSRRLSPVLTLEMLASIEDQRWTGKKVSSLVSEHIRK SLEERLKESKETAKTIIENVYNISDFQADPLKAEGYIMPSPRLLGFGHRQVQNPARVRYQGCARVGETKFGLLNLDDNKR EYPTEVRKCLLEVAKKSGARVEIDFYATRQDLPEGDLAQQRFWQSWADKGIKTVLVVMPLSPNEHKQKIRLQALRAGIAT QFMIPGADPYKALNVVLGLLCKAAWQPVLLEPLDHPECSELTIGFDVGTNRELYYGTSAFAVLANGQSLGWELPDIQRGE TFSGEAIYQTVSKLVNRFYNKFHRYPRKVLLMRDGLVQRGEFDKTIEELRKEKIAVDIVGVRKSGTVRMGREEKGSYRDA AMGTVIFDHERRSFMLVTSQPIKKSSVPIGSARPLRVVHEHGNTPLEVLAIQTYHLSQLHPASGFQACRLPWVLHFADKS SKEFQRIGNSIFSVLQNINREKLIAV
Sequences:
>Translated_746_residues MNLLQKKVEVTLNRFFVKELTQEELTFYEYSCRPNPLPDLGEEQRALSKICNQLGVMAVRLGNRIITREKVPASKLKTEE WELEELGSKALDCTDPTERQALETFERKKLDWSLRSKYKRTEIERSTGGGLIWWVTGLEGVERIEDSEGVKPLCGDGWEV HRGRELDVVIRQDKKLYLEIDIRYHFYSPWTLHEWLENYPDVSIEIVRNTYRTKNNKYPTWEYRGIISNQSPREVWLAEL NTSLADYHVQKYGATPEEVDGSLVVQVVSRERNFRQKAEPILHLSRRLSPVLTLEMLASIEDQRWTGKKVSSLVSEHIRK SLEERLKESKETAKTIIENVYNISDFQADPLKAEGYIMPSPRLLGFGHRQVQNPARVRYQGCARVGETKFGLLNLDDNKR EYPTEVRKCLLEVAKKSGARVEIDFYATRQDLPEGDLAQQRFWQSWADKGIKTVLVVMPLSPNEHKQKIRLQALRAGIAT QFMIPGADPYKALNVVLGLLCKAAWQPVLLEPLDHPECSELTIGFDVGTNRELYYGTSAFAVLANGQSLGWELPDIQRGE TFSGEAIYQTVSKLVNRFYNKFHRYPRKVLLMRDGLVQRGEFDKTIEELRKEKIAVDIVGVRKSGTVRMGREEKGSYRDA AMGTVIFDHERRSFMLVTSQPIKKSSVPIGSARPLRVVHEHGNTPLEVLAIQTYHLSQLHPASGFQACRLPWVLHFADKS SKEFQRIGNSIFSVLQNINREKLIAV >Mature_746_residues MNLLQKKVEVTLNRFFVKELTQEELTFYEYSCRPNPLPDLGEEQRALSKICNQLGVMAVRLGNRIITREKVPASKLKTEE WELEELGSKALDCTDPTERQALETFERKKLDWSLRSKYKRTEIERSTGGGLIWWVTGLEGVERIEDSEGVKPLCGDGWEV HRGRELDVVIRQDKKLYLEIDIRYHFYSPWTLHEWLENYPDVSIEIVRNTYRTKNNKYPTWEYRGIISNQSPREVWLAEL NTSLADYHVQKYGATPEEVDGSLVVQVVSRERNFRQKAEPILHLSRRLSPVLTLEMLASIEDQRWTGKKVSSLVSEHIRK SLEERLKESKETAKTIIENVYNISDFQADPLKAEGYIMPSPRLLGFGHRQVQNPARVRYQGCARVGETKFGLLNLDDNKR EYPTEVRKCLLEVAKKSGARVEIDFYATRQDLPEGDLAQQRFWQSWADKGIKTVLVVMPLSPNEHKQKIRLQALRAGIAT QFMIPGADPYKALNVVLGLLCKAAWQPVLLEPLDHPECSELTIGFDVGTNRELYYGTSAFAVLANGQSLGWELPDIQRGE TFSGEAIYQTVSKLVNRFYNKFHRYPRKVLLMRDGLVQRGEFDKTIEELRKEKIAVDIVGVRKSGTVRMGREEKGSYRDA AMGTVIFDHERRSFMLVTSQPIKKSSVPIGSARPLRVVHEHGNTPLEVLAIQTYHLSQLHPASGFQACRLPWVLHFADKS SKEFQRIGNSIFSVLQNINREKLIAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85745; Mature: 85745
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: PS00678 WD_REPEATS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLLQKKVEVTLNRFFVKELTQEELTFYEYSCRPNPLPDLGEEQRALSKICNQLGVMAVR CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LGNRIITREKVPASKLKTEEWELEELGSKALDCTDPTERQALETFERKKLDWSLRSKYKR HCCEEEECCCCCHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH TEIERSTGGGLIWWVTGLEGVERIEDSEGVKPLCGDGWEVHRGRELDVVIRQDKKLYLEI HHHCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEECCCCCEEEEEECCCEEEEEE DIRYHFYSPWTLHEWLENYPDVSIEIVRNTYRTKNNKYPTWEYRGIISNQSPREVWLAEL EEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHH NTSLADYHVQKYGATPEEVDGSLVVQVVSRERNFRQKAEPILHLSRRLSPVLTLEMLASI HCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH EDQRWTGKKVSSLVSEHIRKSLEERLKESKETAKTIIENVYNISDFQADPLKAEGYIMPS HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCC PRLLGFGHRQVQNPARVRYQGCARVGETKFGLLNLDDNKREYPTEVRKCLLEVAKKSGAR CCEECCCHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE VEIDFYATRQDLPEGDLAQQRFWQSWADKGIKTVLVVMPLSPNEHKQKIRLQALRAGIAT EEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCHHH QFMIPGADPYKALNVVLGLLCKAAWQPVLLEPLDHPECSELTIGFDVGTNRELYYGTSAF EEECCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEECCCCCEEEECCCEE AVLANGQSLGWELPDIQRGETFSGEAIYQTVSKLVNRFYNKFHRYPRKVLLMRDGLVQRG EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHEEHHHCCCCCCC EFDKTIEELRKEKIAVDIVGVRKSGTVRMGREEKGSYRDAAMGTVIFDHERRSFMLVTSQ CHHHHHHHHHHHCEEEEEEEECCCCCEEECCCCCCCCHHHHHCEEEEECCCCEEEEEECC PIKKSSVPIGSARPLRVVHEHGNTPLEVLAIQTYHLSQLHPASGFQACRLPWVLHFADKS CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEHHCCCCCCCCCCHHCCCEEEEECCCC SKEFQRIGNSIFSVLQNINREKLIAV HHHHHHHHHHHHHHHHCCCHHHEECC >Mature Secondary Structure MNLLQKKVEVTLNRFFVKELTQEELTFYEYSCRPNPLPDLGEEQRALSKICNQLGVMAVR CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LGNRIITREKVPASKLKTEEWELEELGSKALDCTDPTERQALETFERKKLDWSLRSKYKR HCCEEEECCCCCHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH TEIERSTGGGLIWWVTGLEGVERIEDSEGVKPLCGDGWEVHRGRELDVVIRQDKKLYLEI HHHCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEECCCCCEEEEEECCCEEEEEE DIRYHFYSPWTLHEWLENYPDVSIEIVRNTYRTKNNKYPTWEYRGIISNQSPREVWLAEL EEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHH NTSLADYHVQKYGATPEEVDGSLVVQVVSRERNFRQKAEPILHLSRRLSPVLTLEMLASI HCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH EDQRWTGKKVSSLVSEHIRKSLEERLKESKETAKTIIENVYNISDFQADPLKAEGYIMPS HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCC PRLLGFGHRQVQNPARVRYQGCARVGETKFGLLNLDDNKREYPTEVRKCLLEVAKKSGAR CCEECCCHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE VEIDFYATRQDLPEGDLAQQRFWQSWADKGIKTVLVVMPLSPNEHKQKIRLQALRAGIAT EEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCHHH QFMIPGADPYKALNVVLGLLCKAAWQPVLLEPLDHPECSELTIGFDVGTNRELYYGTSAF EEECCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEECCCCCEEEECCCEE AVLANGQSLGWELPDIQRGETFSGEAIYQTVSKLVNRFYNKFHRYPRKVLLMRDGLVQRG EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHEEHHHCCCCCCC EFDKTIEELRKEKIAVDIVGVRKSGTVRMGREEKGSYRDAAMGTVIFDHERRSFMLVTSQ CHHHHHHHHHHHCEEEEEEEECCCCCEEECCCCCCCCHHHHHCEEEEECCCCEEEEEECC PIKKSSVPIGSARPLRVVHEHGNTPLEVLAIQTYHLSQLHPASGFQACRLPWVLHFADKS CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEHHCCCCCCCCCCHHCCCEEEEECCCC SKEFQRIGNSIFSVLQNINREKLIAV HHHHHHHHHHHHHHHHCCCHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA