| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86610018
Identifier: 86610018
GI number: 86610018
Start: 2686481
End: 2687728
Strand: Direct
Name: 86610018
Synonym: CYB_2587
Alternate gene names: NA
Gene position: 2686481-2687728 (Clockwise)
Preceding gene: 86610015
Following gene: 86610021
Centisome position: 88.18
GC content: 58.89
Gene sequence:
>1248_bases ATGCTGACACCTGTTGATCTGGAAAAACGAGTGGCTTATTTGCAGAGTCCCCAAGCCGTTCGGGATCGCTGTCGGTTGCT ATTGGAAAGGGTTTTGGCCGGTGAATCAGAGCATTTTCGCCTCGACCTGAATCGGATGGGATCCGTAGCCGACTATGTGA TCACCACAATGCGGGCCCACTATCCCACCGGGGAAATTCCCTTCCACAGCCGCTGGCAACATTTTCAAGTGGGATCCGGG GAGCGCCTAGCCCGTTTGGAAAATCGACTTAAAGACATGGATCCGCTGGAGCGGCTGCGATGCAAGTGGGATCTGGCCAT CGTCAGCGTGTTGCTGGACGCAGGCGCAGGCTCTGCCTGGAAGTACCGGGATCCAGAAAGTCAGACGGCGGTGGGTCGTT CCGAAGGTTTGGCCTTGGCCAGTTTCGACTGGTTCTGGCAAGGTGGGTTTTCCAGCGATCCCCAGCAGCCTCTGCAGGTG GATGCGGCGGGCCTGGAGCGGATCACCTTGGCGGATTTGGCAGCAGCTTTCCAGGTGGGGCCGGAAAATCCTTTACTGGG ACTGGAGGGGCGCTGGCAACTGCTGCAAAGGTTGGCACAAACTTTGCGGGCTCAACCCCATTACTTTGGATCCGGTCACA ATCTTCCTCGTCCAGGCCGGTTGTGGGACGCCATCCAGCCTGAGGATCCCAGCCGTGGGATCAAAGCAGCACAGGTCTTC CAGGCAGTTCAGAGGGGGTTTAGCTCCATTTGGCCTGGGCGAGTCTCGCTGGCCGGGATCCCTCTGGGGGATGTCTGGCC CTATCCCCACCTGCCCCAAACAGAGCCGGGGAGCCATTGGGTGCCTTTTCACAAGTTGTCCCAGTGGATGACCTATTCCC TGCTGGAGCCGTTGCAGCAGGAGGGGATCCCAATCGGGGGTTTGGATGAGCTGACGGGTTTGGCGGAGTATCGCAACGGG GGGCTGTTTGTGGATTTGGGGGTGATCCAGCTCAAGCAGCCGGAGATTGGGCAGCAACCGCATCCCCCAGATTCGACGGT GATTGTGGAGTGGCGAGCCCTGACGGTGATTTTGCTGGATCAAGTTGCCTCCTTAATCCGGGAAAGGCTTGGCTGCTCTG CCCAGGAGTTGCCCCTGGTGAAAATACTGCAAGGGGGAACCTGGACGGCAGGACGGCAAATCGCGGCCCAGCTCAGGCCA GATGCTTCTCCTCCCATCCAACTGCTCAGCGATGGCACGGTGTTCTAA
Upstream 100 bases:
>100_bases AAGTGGGCCAAGGCTTGCAGACGAATGCAGATCAAGGTGGGTTCCCGCCCGATTATGCTGAGAAAATTCTCGGCATGGAC AATTGAGAAGGAACGGCTTG
Downstream 100 bases:
>100_bases GAGGGGATGGGCAGGCCCCGAGTAATCCTTATGAAACTTCGCAGCAGCCGCATGGCCAGGTCGGGACGGGATCCCCAGTG CAGATGCAGGTACGAAGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 415; Mature: 415
Protein sequence:
>415_residues MLTPVDLEKRVAYLQSPQAVRDRCRLLLERVLAGESEHFRLDLNRMGSVADYVITTMRAHYPTGEIPFHSRWQHFQVGSG ERLARLENRLKDMDPLERLRCKWDLAIVSVLLDAGAGSAWKYRDPESQTAVGRSEGLALASFDWFWQGGFSSDPQQPLQV DAAGLERITLADLAAAFQVGPENPLLGLEGRWQLLQRLAQTLRAQPHYFGSGHNLPRPGRLWDAIQPEDPSRGIKAAQVF QAVQRGFSSIWPGRVSLAGIPLGDVWPYPHLPQTEPGSHWVPFHKLSQWMTYSLLEPLQQEGIPIGGLDELTGLAEYRNG GLFVDLGVIQLKQPEIGQQPHPPDSTVIVEWRALTVILLDQVASLIRERLGCSAQELPLVKILQGGTWTAGRQIAAQLRP DASPPIQLLSDGTVF
Sequences:
>Translated_415_residues MLTPVDLEKRVAYLQSPQAVRDRCRLLLERVLAGESEHFRLDLNRMGSVADYVITTMRAHYPTGEIPFHSRWQHFQVGSG ERLARLENRLKDMDPLERLRCKWDLAIVSVLLDAGAGSAWKYRDPESQTAVGRSEGLALASFDWFWQGGFSSDPQQPLQV DAAGLERITLADLAAAFQVGPENPLLGLEGRWQLLQRLAQTLRAQPHYFGSGHNLPRPGRLWDAIQPEDPSRGIKAAQVF QAVQRGFSSIWPGRVSLAGIPLGDVWPYPHLPQTEPGSHWVPFHKLSQWMTYSLLEPLQQEGIPIGGLDELTGLAEYRNG GLFVDLGVIQLKQPEIGQQPHPPDSTVIVEWRALTVILLDQVASLIRERLGCSAQELPLVKILQGGTWTAGRQIAAQLRP DASPPIQLLSDGTVF >Mature_415_residues MLTPVDLEKRVAYLQSPQAVRDRCRLLLERVLAGESEHFRLDLNRMGSVADYVITTMRAHYPTGEIPFHSRWQHFQVGSG ERLARLENRLKDMDPLERLRCKWDLAIVSVLLDAGAGSAWKYRDPESQTAVGRSEGLALASFDWFWQGGFSSDPQQPLQV DAAGLERITLADLAAAFQVGPENPLLGLEGRWQLLQRLAQTLRAQPHYFGSGHNLPRPGRLWDAIQPEDPSRGIKAAQVF QAVQRGFSSIWPGRVSLAGIPLGDVWPYPHLPQTEPGSHWVPFHKLSQWMTYSLLEPLQQEGIPIGGLDELTGLAEYRNG GLFVDLGVIQLKQPEIGQQPHPPDSTVIVEWRALTVILLDQVASLIRERLGCSAQELPLVKILQGGTWTAGRQIAAQLRP DASPPIQLLSDGTVF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46215; Mature: 46215
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTPVDLEKRVAYLQSPQAVRDRCRLLLERVLAGESEHFRLDLNRMGSVADYVITTMRAH CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCHHHHHHHHHHHHC YPTGEIPFHSRWQHFQVGSGERLARLENRLKDMDPLERLRCKWDLAIVSVLLDAGAGSAW CCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC KYRDPESQTAVGRSEGLALASFDWFWQGGFSSDPQQPLQVDAAGLERITLADLAAAFQVG CCCCCCHHHHCCCCCCCEEEEEHHEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCC PENPLLGLEGRWQLLQRLAQTLRAQPHYFGSGHNLPRPGRLWDAIQPEDPSRGIKAAQVF CCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH QAVQRGFSSIWPGRVSLAGIPLGDVWPYPHLPQTEPGSHWVPFHKLSQWMTYSLLEPLQQ HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH EGIPIGGLDELTGLAEYRNGGLFVDLGVIQLKQPEIGQQPHPPDSTVIVEWRALTVILLD CCCCCCCHHHHHHHHHHCCCCEEEEECEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHH QVASLIRERLGCSAQELPLVKILQGGTWTAGRQIAAQLRPDASPPIQLLSDGTVF HHHHHHHHHHCCCHHHCCHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCC >Mature Secondary Structure MLTPVDLEKRVAYLQSPQAVRDRCRLLLERVLAGESEHFRLDLNRMGSVADYVITTMRAH CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCHHHHHHHHHHHHC YPTGEIPFHSRWQHFQVGSGERLARLENRLKDMDPLERLRCKWDLAIVSVLLDAGAGSAW CCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC KYRDPESQTAVGRSEGLALASFDWFWQGGFSSDPQQPLQVDAAGLERITLADLAAAFQVG CCCCCCHHHHCCCCCCCEEEEEHHEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCC PENPLLGLEGRWQLLQRLAQTLRAQPHYFGSGHNLPRPGRLWDAIQPEDPSRGIKAAQVF CCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH QAVQRGFSSIWPGRVSLAGIPLGDVWPYPHLPQTEPGSHWVPFHKLSQWMTYSLLEPLQQ HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH EGIPIGGLDELTGLAEYRNGGLFVDLGVIQLKQPEIGQQPHPPDSTVIVEWRALTVILLD CCCCCCCHHHHHHHHHHCCCCEEEEECEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHH QVASLIRERLGCSAQELPLVKILQGGTWTAGRQIAAQLRPDASPPIQLLSDGTVF HHHHHHHHHHCCCHHHCCHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA