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The map label for this gene is ydcM [C]

Identifier: 86609918

GI number: 86609918

Start: 2581306

End: 2582079

Strand: Direct

Name: ydcM [C]

Synonym: CYB_2484

Alternate gene names: 86609918

Gene position: 2581306-2582079 (Clockwise)

Preceding gene: 86609914

Following gene: 86609919

Centisome position: 84.73

GC content: 52.71

Gene sequence:

>774_bases
ATGAGAACTGCTTACCAGTATCGCTTACGCCCTACTTCTAGCCAAGTTGCTCTGATGGACCAATGGCTAGACTTGTTACG
CAAGCAGTACAACTACCGCTTGGCAGAGCGCTTTGCGTGGTGGGAACACAATCGCTGTGATATCAATGCTTGTCCCTTAA
TCTGTCACTTGCCCAAGCTGAAAGACAATCCCGATTTCTACTCCCAGAAACGGGATTTGGTGAAGACGAAAGCCCTGTTT
CCGCAGTACAGAGCAGTCCATTCGCAAGTCCTGCAAAACTGCATAGAGCGAGTGCACAAAGCATTCGACCGCTGGCTGAA
GGGTGACGGTAACGGCAAGCGGGCAGGGAAACCCAGATTTAAGGGAGCTGGGCGGTATCGCTTCTTCACTTTCCCCCCGA
TGAAACAAGACTGCATTTGCGGGCAGTTTATCCATCTGCCCAAAATCGGTGCTGTTCGGATAATTCAGCACCGTCCTTTG
CCTGAGGGCTTTGTGATTAAGACCGCTGCCATCACCCGCAAGGCAGACGGGTGGTATGTGACCTTGAGCCTGCAAGATTC
GTCCGTCCCTGAGTTTACTCCTGAGCCTGCAACACTGGAGAACACGATGGGGATCGACGTGGGACTGGACTCCTTTTTGG
TGACCGATGCGGGGGAGTCTGTTCCAGTTCCCCAGTATTACCGCAGAGCCCAAAAGCGGTTAAAGAGACTGCAGCGGGCA
GTGTCTCGCAAGAAGAAAGGGTCAAACCGCCTATGGCTAGTGACTAGTGGATAG

Upstream 100 bases:

>100_bases
TCACCACTATCCAGGGTGAGGGTCGGGATAAAAGGCGAGGACACGATGCTTCGTCCTTACTGGTGCTATGACCGGCGTAG
CAGGATTTTATACGCTCATC

Downstream 100 bases:

>100_bases
TGACCAGTGGATAGTGAATAGTGACTATCCACTAACCACTATCTCAGCGCAAAGATTTTCATGACAAAACAGCGAACTGG
CTGGTAAGCAAGGGCAAGCA

Product: ISSoc11, transposase orfA

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MRTAYQYRLRPTSSQVALMDQWLDLLRKQYNYRLAERFAWWEHNRCDINACPLICHLPKLKDNPDFYSQKRDLVKTKALF
PQYRAVHSQVLQNCIERVHKAFDRWLKGDGNGKRAGKPRFKGAGRYRFFTFPPMKQDCICGQFIHLPKIGAVRIIQHRPL
PEGFVIKTAAITRKADGWYVTLSLQDSSVPEFTPEPATLENTMGIDVGLDSFLVTDAGESVPVPQYYRRAQKRLKRLQRA
VSRKKKGSNRLWLVTSG

Sequences:

>Translated_257_residues
MRTAYQYRLRPTSSQVALMDQWLDLLRKQYNYRLAERFAWWEHNRCDINACPLICHLPKLKDNPDFYSQKRDLVKTKALF
PQYRAVHSQVLQNCIERVHKAFDRWLKGDGNGKRAGKPRFKGAGRYRFFTFPPMKQDCICGQFIHLPKIGAVRIIQHRPL
PEGFVIKTAAITRKADGWYVTLSLQDSSVPEFTPEPATLENTMGIDVGLDSFLVTDAGESVPVPQYYRRAQKRLKRLQRA
VSRKKKGSNRLWLVTSG
>Mature_257_residues
MRTAYQYRLRPTSSQVALMDQWLDLLRKQYNYRLAERFAWWEHNRCDINACPLICHLPKLKDNPDFYSQKRDLVKTKALF
PQYRAVHSQVLQNCIERVHKAFDRWLKGDGNGKRAGKPRFKGAGRYRFFTFPPMKQDCICGQFIHLPKIGAVRIIQHRPL
PEGFVIKTAAITRKADGWYVTLSLQDSSVPEFTPEPATLENTMGIDVGLDSFLVTDAGESVPVPQYYRRAQKRLKRLQRA
VSRKKKGSNRLWLVTSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=162, Percent_Identity=27.1604938271605, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 29842; Mature: 29842

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTAYQYRLRPTSSQVALMDQWLDLLRKQYNYRLAERFAWWEHNRCDINACPLICHLPKL
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECCCC
KDNPDFYSQKRDLVKTKALFPQYRAVHSQVLQNCIERVHKAFDRWLKGDGNGKRAGKPRF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
KGAGRYRFFTFPPMKQDCICGQFIHLPKIGAVRIIQHRPLPEGFVIKTAAITRKADGWYV
CCCCCEEEEECCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCEEEEEHHHEECCCCEEE
TLSLQDSSVPEFTPEPATLENTMGIDVGLDSFLVTDAGESVPVPQYYRRAQKRLKRLQRA
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
VSRKKKGSNRLWLVTSG
HHHHHCCCCEEEEEECC
>Mature Secondary Structure
MRTAYQYRLRPTSSQVALMDQWLDLLRKQYNYRLAERFAWWEHNRCDINACPLICHLPKL
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECCCC
KDNPDFYSQKRDLVKTKALFPQYRAVHSQVLQNCIERVHKAFDRWLKGDGNGKRAGKPRF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
KGAGRYRFFTFPPMKQDCICGQFIHLPKIGAVRIIQHRPLPEGFVIKTAAITRKADGWYV
CCCCCEEEEECCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCEEEEEHHHEECCCCEEE
TLSLQDSSVPEFTPEPATLENTMGIDVGLDSFLVTDAGESVPVPQYYRRAQKRLKRLQRA
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
VSRKKKGSNRLWLVTSG
HHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]