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The map label for this gene is ydcM [C]

Identifier: 86609903

GI number: 86609903

Start: 2565690

End: 2566883

Strand: Direct

Name: ydcM [C]

Synonym: CYB_2468

Alternate gene names: 86609903

Gene position: 2565690-2566883 (Clockwise)

Preceding gene: 86609901

Following gene: 86609904

Centisome position: 84.21

GC content: 56.2

Gene sequence:

>1194_bases
ATGACCCAAGTCCTGACCGTCTCCTGCAAGCTCAAGGTGTCCCAGTCGCAAGCCGCAAAGTTGGATGCGACAATGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAGTCCCTTTGCT
ATTACCAGATTCGCGCTCGGTTTGGCTTGTCCAGTAACTTGGCTCAGCAGGTCTGCAGACGGCTGGCCGGTGCCCGTAAA
GTTGCCCGACAGAAAAACCGTCCGGTCAAAGCGTTCAAGAGAGGCTTTGCGACCTACGATGCCCGTATCTTTTCGTTTCG
CGAGAAAGACTGGACGGTGTCGCTGACCACGGTGGAGGGTCGGGAGCGCTTTGAGCTGGCGATTGGCCGCTACCAGAGAG
AACAGCTGGCAGGCTCCAATCCCAAATCTGCCACTCTGGTCAAGCGTAAAGACGGCTCCTACTCTATTCAAATCTGTGTG
GAAGCGGAGCCATCCCCACCGCAACGCACGGGCAGAGTGCTGGGGGTGGATTTGGGAAGGACGGATATTGCTCATACATC
GGAAGGAGATAACTGGAATGGACAGCAGTTGAACAAAGTCCGAGACCATCACTCGCGGTTGAGGGCGGTACTTCAACGCA
AAGCCAGTAAGGGCACCCGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGGCTGTCTGGCAAGGAGAGGCGCTTT
CAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGACCACAAACAGCGCTATCGCCCTGGAAGA
CCTGACAGGGATCCGGGAAAGGGTCAATCAACAGCCACGCAGCAAAGCTGAGCGGCGCAGAACCAATAACTGGGCGTTCT
ACCAGCTTAGGATGTTTGTGGTCTACAAGGCTGCCATCGCCGGAGTACCTGTAGTACTGGTTCCGCCTGCCTACACGTCG
CAGACCTGCCACCGGTGTTTGCACATTCATCCCGACCCTGCGCAATCCTATCGCAGTGGGAAGCAGTTCAAGTGTGGGCA
CTGTGGATGGGAAGGGGATGCGGACTGGAATGGGGCCAACATGATTGCCAAACTTGGGGCTGCCGTAAACCAGCCTAGAG
GTCCGTGGTTGGCTTGCCAACTGCAGGGCTACCGAAAGCCCGCCCTGTACTGCGAAGTAGTCAGGGTCGGGTAG

Upstream 100 bases:

>100_bases
GGACATCTACGAACACCTGTTTTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAAT
GCGGAAGTTATGATAGAACC

Downstream 100 bases:

>100_bases
TTTACTTCAAGCTGGCTACAGTGGAGTTAAATCTGAAACGTCTGAGCCAAACGAGGTGGGATCCGATGGTACTGGACACA
TTGCCGCTGGTTGCCGCTGT

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MTQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARK
VARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFVVYKAAIAGVPVVLVPPAYTS
QTCHRCLHIHPDPAQSYRSGKQFKCGHCGWEGDADWNGANMIAKLGAAVNQPRGPWLACQLQGYRKPALYCEVVRVG

Sequences:

>Translated_397_residues
MTQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARK
VARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFVVYKAAIAGVPVVLVPPAYTS
QTCHRCLHIHPDPAQSYRSGKQFKCGHCGWEGDADWNGANMIAKLGAAVNQPRGPWLACQLQGYRKPALYCEVVRVG
>Mature_396_residues
TQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARKV
ARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVE
AEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRFQ
AWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFVVYKAAIAGVPVVLVPPAYTSQ
TCHRCLHIHPDPAQSYRSGKQFKCGHCGWEGDADWNGANMIAKLGAAVNQPRGPWLACQLQGYRKPALYCEVVRVG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=231, Percent_Identity=28.1385281385281, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44908; Mature: 44777

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFV
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCEEHHHHHHHH
VYKAAIAGVPVVLVPPAYTSQTCHRCLHIHPDPAQSYRSGKQFKCGHCGWEGDADWNGAN
HHHHHHHCCCEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCEECCCCCCCCCCCCCHHH
MIAKLGAAVNQPRGPWLACQLQGYRKPALYCEVVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECC
>Mature Secondary Structure 
TQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFV
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCEEHHHHHHHH
VYKAAIAGVPVVLVPPAYTSQTCHRCLHIHPDPAQSYRSGKQFKCGHCGWEGDADWNGAN
HHHHHHHCCCEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCEECCCCCCCCCCCCCHHH
MIAKLGAAVNQPRGPWLACQLQGYRKPALYCEVVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]