| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609829
Identifier: 86609829
GI number: 86609829
Start: 2492543
End: 2493619
Strand: Direct
Name: 86609829
Synonym: CYB_2391
Alternate gene names: NA
Gene position: 2492543-2493619 (Clockwise)
Preceding gene: 86609824
Following gene: 86609831
Centisome position: 81.81
GC content: 58.68
Gene sequence:
>1077_bases ATGGCTTCGTCTCAACCCTCTGACTCGAACACCAAGGCTCTGAGCCGCCGTCAGCTTCTCAAAGTGGGGGCCGCAGCCCT TGGGGGCGGTCTGTTGGCGGCAGGGGGTGCCCAAGCTCAGCGCAAACCCTCTCCCACCCTGATCGTGGCTCAGGGATCCG GCCTGGATCGCGTTTCCTATGCTACCAACTGGTATGCTCAGGCGGAACATGGGGGCTTCTATCAGGCGGTGGCGACCGGC ATCTACCGCGAGCATGGCCTGGATGTGACCATCAAGATGGGTGGCCCTGGCATCAACATCACCCAAGTTTTGGCCGGTGG AGCTGCCGAGTTTGCCATGGGGGGAAGCACAGGGGTGATCAATGCTGTGCGAGAAGGGATCCCCTTGGTGTGCGTGGCGG CCATTTTTCAAAAAGACCCGCAGATCATCATGACCCACCCCGGCACCCAGCGCTTTGAAGAGCTCAAGGGCCGGCCCATT TTCGTCTCGAAAGGGGGGCTTGCCACCTACTGGCCCTACCTAAAGGCCCGCTTTGGCTTCACCGACGATCAGGTTCGTCC CTACAACTTCAACCCCGGCCCCTTTTTGGCGGATCCCAGCTCAGCTCAGCAAGGCTATCTGACATCCGAGCCTTTTGCCA TCCAACGGGAAGGGGGATTTGAGCCGGTGGTCTTCCTCCTGGCGGATTTGGGCTACAAACCCTATGCCACCACCATCGAA ACCCGTCGCCAACTGGTGGAAACCAAGCCCGACTTGGTGGAGCGATTCGTGGATGCCTCTATCAAAGGCTGGTACAGCTT CTTGGAGGATCCCCGTCCGGCCTATCGCTTGATCAAGCAGGACAACCCGGAGATGACCGATGCCCAGTTGGCCTACAGCT TCGAGAAATTGCAGGAGTACGGCATCATCTTGTCCGGCGATGCGTTGGAAAAAGGCATTGGCGCCATGACCGACAAACGC TGGCAAGACTTCTTCGACAGCATGACGGTGGCCGGCGTATTTGAGCCAACCATCAACTACCGGGCTGCCTATACGCTGGA CTTCGTCAATAAAGGCACTGCCTACTACACTGCCTGA
Upstream 100 bases:
>100_bases ACAAGTAGGTTTACAACCGTATCCGTAGCCCCTCAATAGGCTGTACCTGCATCTTTGGCCCCCTCACACCTTGCAAGGAT TAGCTTAGGGAGAATGGATT
Downstream 100 bases:
>100_bases CGGACTTCCACCCTTGGCGCTTCTCAGCCCAAGGGATCCCCCCTCGCCCCCAGCCCCTCTTCCACCAAGGGAGAGGGGAA CTATAGTCATTTCAAACTAG
Product: secreted protein
Products: NA
Alternate protein names: NMT1/THI5-Like Domain-Containing Protein; Histidine Kinase; Diguanylate Cyclase; NMT1/THI5 Like Family; NMT1/THI5 Like Domain-Containing Protein; Twin-Arginine Translocation Pathway Signal; GGDEF Domain-Containing Protein; Permease Protein Of ABC Transporter; Secreted Protein; Nitrate/Sulfonate/Bicarbonate ABC Transporter; PAS Sensor Protein; ABC Transporter Periplasmic; Two-Component Sensor Histidine Kinase; Sensory Box Histidine Kinase; Diguanylate Cyclase With Extracellular Sensor; ABC Transporter Periplasmic Components; NMT1/THI5-Like Protein; Diguanylate Cyclase/Phosphodiesterase; Sulfonate/Nitrate Transport System; Nitrate/Sulfonate/Bicarbonate ABC Transporter Permease; Diguanylate Cyclase With PAS/PAC Sensor; ABC Transporter Permease; PAS/GGDEF Domain-Containing Protein; Signal Transduction Response Regulator; PAS/PAC Sensor Signal Transduction Histidine Kinase; Periplasmic-Component Of ABC Transporter; PasGgdef; PAS/PAC Sensor Hybrid Histidine Kinase; Two Domain Sensory Box Histidine Kinase; Signal Transduction Protein; Nitrate/Sulfonate ABC Transporter; Diguanylate Cyclase Domain Protein; Sensory Transduction Histidine Kinase; Pyrimidine Biosynthesis; PAS/PAC Sensor-Containg Diguanylate Cyclase; NMT1/THI5-Ike Domain-Containing Protein; Membrane Lipoprotein Lipid Attachment Site; PAS/PAC Sensor-Containing Diguanylate Cyclase; Lipoprotein; Exported Protein; Multi-Sensor Signal Transduction Histidine Kinase
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MASSQPSDSNTKALSRRQLLKVGAAALGGGLLAAGGAQAQRKPSPTLIVAQGSGLDRVSYATNWYAQAEHGGFYQAVATG IYREHGLDVTIKMGGPGINITQVLAGGAAEFAMGGSTGVINAVREGIPLVCVAAIFQKDPQIIMTHPGTQRFEELKGRPI FVSKGGLATYWPYLKARFGFTDDQVRPYNFNPGPFLADPSSAQQGYLTSEPFAIQREGGFEPVVFLLADLGYKPYATTIE TRRQLVETKPDLVERFVDASIKGWYSFLEDPRPAYRLIKQDNPEMTDAQLAYSFEKLQEYGIILSGDALEKGIGAMTDKR WQDFFDSMTVAGVFEPTINYRAAYTLDFVNKGTAYYTA
Sequences:
>Translated_358_residues MASSQPSDSNTKALSRRQLLKVGAAALGGGLLAAGGAQAQRKPSPTLIVAQGSGLDRVSYATNWYAQAEHGGFYQAVATG IYREHGLDVTIKMGGPGINITQVLAGGAAEFAMGGSTGVINAVREGIPLVCVAAIFQKDPQIIMTHPGTQRFEELKGRPI FVSKGGLATYWPYLKARFGFTDDQVRPYNFNPGPFLADPSSAQQGYLTSEPFAIQREGGFEPVVFLLADLGYKPYATTIE TRRQLVETKPDLVERFVDASIKGWYSFLEDPRPAYRLIKQDNPEMTDAQLAYSFEKLQEYGIILSGDALEKGIGAMTDKR WQDFFDSMTVAGVFEPTINYRAAYTLDFVNKGTAYYTA >Mature_357_residues ASSQPSDSNTKALSRRQLLKVGAAALGGGLLAAGGAQAQRKPSPTLIVAQGSGLDRVSYATNWYAQAEHGGFYQAVATGI YREHGLDVTIKMGGPGINITQVLAGGAAEFAMGGSTGVINAVREGIPLVCVAAIFQKDPQIIMTHPGTQRFEELKGRPIF VSKGGLATYWPYLKARFGFTDDQVRPYNFNPGPFLADPSSAQQGYLTSEPFAIQREGGFEPVVFLLADLGYKPYATTIET RRQLVETKPDLVERFVDASIKGWYSFLEDPRPAYRLIKQDNPEMTDAQLAYSFEKLQEYGIILSGDALEKGIGAMTDKRW QDFFDSMTVAGVFEPTINYRAAYTLDFVNKGTAYYTA
Specific function: Unknown
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39022; Mature: 38890
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSQPSDSNTKALSRRQLLKVGAAALGGGLLAAGGAQAQRKPSPTLIVAQGSGLDRVSY CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEECCCCCHHHH ATNWYAQAEHGGFYQAVATGIYREHGLDVTIKMGGPGINITQVLAGGAAEFAMGGSTGVI HHCCEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCHHHHCCCCCHHH NAVREGIPLVCVAAIFQKDPQIIMTHPGTQRFEELKGRPIFVSKGGLATYWPYLKARFGF HHHHCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCC TDDQVRPYNFNPGPFLADPSSAQQGYLTSEPFAIQREGGFEPVVFLLADLGYKPYATTIE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHH TRRQLVETKPDLVERFVDASIKGWYSFLEDPRPAYRLIKQDNPEMTDAQLAYSFEKLQEY HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC GIILSGDALEKGIGAMTDKRWQDFFDSMTVAGVFEPTINYRAAYTLDFVNKGTAYYTA CCEEECCHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEEECCCCCEEECC >Mature Secondary Structure ASSQPSDSNTKALSRRQLLKVGAAALGGGLLAAGGAQAQRKPSPTLIVAQGSGLDRVSY CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEECCCCCHHHH ATNWYAQAEHGGFYQAVATGIYREHGLDVTIKMGGPGINITQVLAGGAAEFAMGGSTGVI HHCCEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCHHHHCCCCCHHH NAVREGIPLVCVAAIFQKDPQIIMTHPGTQRFEELKGRPIFVSKGGLATYWPYLKARFGF HHHHCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCC TDDQVRPYNFNPGPFLADPSSAQQGYLTSEPFAIQREGGFEPVVFLLADLGYKPYATTIE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHH TRRQLVETKPDLVERFVDASIKGWYSFLEDPRPAYRLIKQDNPEMTDAQLAYSFEKLQEY HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC GIILSGDALEKGIGAMTDKRWQDFFDSMTVAGVFEPTINYRAAYTLDFVNKGTAYYTA CCEEECCHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEEECCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA