Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609636

Identifier: 86609636

GI number: 86609636

Start: 2294576

End: 2294989

Strand: Reverse

Name: 86609636

Synonym: CYB_2190

Alternate gene names: NA

Gene position: 2294989-2294576 (Counterclockwise)

Preceding gene: 86609638

Following gene: 86609635

Centisome position: 75.33

GC content: 57.0

Gene sequence:

>414_bases
ATGGTTGAAAGGAGAAGAGCCATTCCGGAACCCCTATCTCTGACGGTCAGCTTGCGCGGCAGCCGCGAGGCGCTGGAAAA
CTGCCAGGTCTTTCACCTGACTGGCCTTCTGGATGCCTTTTCCGAGCCGGTCTTTGTTAAGGTGGTCACCAAATACCTGG
AAGAGGGATCCCCTAACCTGATCCTGGATTTGACAGGGATCGACTTCATCGACAGCTCTGGCGTCGGCGCCCTGGTGCAA
TTGGCCAAGCTGGTGCAGGGCCGCGCAGGTATCTTTCAGGTGGTGAGCAACCCCCGCATTACCCAAACGGTGAAACTGGT
GCGCCTGGAGAAGTTCCTATCTTTGCGCAACTCCTTGCAGGAAGCCTTGGATCGCCTGAAGGAAGGAAGTACGGGCAGTA
CAGAGACCGCCTGA

Upstream 100 bases:

>100_bases
AAAAATACCGTCTCCCGCGGAGAACGGGGATGCTAAGCTATCTCCACACCCGAGATTGAACCCACCCTGGGGCCTCTCTC
AGGTGTTCCCTTCTGTCGAG

Downstream 100 bases:

>100_bases
TACGTAATAAGTATGGGTCTGGGAACCTTTTGGGGGATCAGTGCTGGAGCAGGGGATCCCGACTGGATCACGGTCAAAGC
AGCCCGCATCCTCAGCACGG

Product: anti-anti-sigma factor family protein

Products: NA

Alternate protein names: Anti-Anti-Sigma Regulatory Factor; STAS Domain-Containing Protein; Anti-Anti-Sigma Regulatory Factor SpoIIAA; Anti-Sigma-Factor Antagonist Domain-Containing Protein; Anti-Anti-Sigma Regulatory Factor RsbV; Anti-Anti-Sigma Factor; Anti-Anti-Sigma Factor Family Protein; Anti-Sigma F Factor Antagonist; Anti-Anti-Sigma Regulatory Factor Spoiiaa; Anti-Sigma F Factor

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MVERRRAIPEPLSLTVSLRGSREALENCQVFHLTGLLDAFSEPVFVKVVTKYLEEGSPNLILDLTGIDFIDSSGVGALVQ
LAKLVQGRAGIFQVVSNPRITQTVKLVRLEKFLSLRNSLQEALDRLKEGSTGSTETA

Sequences:

>Translated_137_residues
MVERRRAIPEPLSLTVSLRGSREALENCQVFHLTGLLDAFSEPVFVKVVTKYLEEGSPNLILDLTGIDFIDSSGVGALVQ
LAKLVQGRAGIFQVVSNPRITQTVKLVRLEKFLSLRNSLQEALDRLKEGSTGSTETA
>Mature_137_residues
MVERRRAIPEPLSLTVSLRGSREALENCQVFHLTGLLDAFSEPVFVKVVTKYLEEGSPNLILDLTGIDFIDSSGVGALVQ
LAKLVQGRAGIFQVVSNPRITQTVKLVRLEKFLSLRNSLQEALDRLKEGSTGSTETA

Specific function: Unknown

COG id: COG1366

COG function: function code T; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15011; Mature: 15011

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVERRRAIPEPLSLTVSLRGSREALENCQVFHLTGLLDAFSEPVFVKVVTKYLEEGSPNL
CCCCCCCCCCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCE
ILDLTGIDFIDSSGVGALVQLAKLVQGRAGIFQVVSNPRITQTVKLVRLEKFLSLRNSLQ
EEEECCCCEECCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EALDRLKEGSTGSTETA
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MVERRRAIPEPLSLTVSLRGSREALENCQVFHLTGLLDAFSEPVFVKVVTKYLEEGSPNL
CCCCCCCCCCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCE
ILDLTGIDFIDSSGVGALVQLAKLVQGRAGIFQVVSNPRITQTVKLVRLEKFLSLRNSLQ
EEEECCCCEECCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EALDRLKEGSTGSTETA
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA